Wall clock time and date at job start Mon Mar 30 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47373 * 2 1 4 4 H 1.08992 * 109.50363 * 55.07915 * 3 2 1 5 5 C 1.53037 * 109.50061 * 295.00021 * 3 2 1 6 6 N 1.46854 * 109.52271 * 180.84236 * 5 3 2 7 7 C 1.46904 * 111.00034 * 185.83682 * 6 5 3 8 8 H 1.08997 * 109.46745 * 188.74525 * 7 6 5 9 9 C 1.53000 * 109.47106 * 308.74664 * 7 6 5 10 10 C 1.53003 * 109.46543 * 68.74470 * 7 6 5 11 11 C 1.50697 * 109.46986 * 63.57644 * 10 7 6 12 12 H 1.08001 * 120.00432 * 5.07651 * 11 10 7 13 13 C 1.37879 * 119.99641 * 185.08054 * 11 10 7 14 14 N 1.31510 * 120.00365 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99868 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47242 * 60.00001 * 15 13 11 17 17 H 1.48498 * 109.46985 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46986 * 299.99940 * 15 13 11 19 19 C 1.46845 * 111.19787 * 61.74271 * 6 5 3 20 20 C 1.53048 * 109.52250 * 298.25712 * 19 6 5 21 21 C 1.53120 * 109.53472 * 175.17726 * 3 2 1 22 22 H 1.08996 * 109.52393 * 297.51865 * 21 3 2 23 23 N 1.46904 * 109.52388 * 57.71055 * 21 3 2 24 24 H 1.08997 * 109.46824 * 300.00337 * 1 2 3 25 25 H 1.09000 * 109.46626 * 59.99835 * 1 2 3 26 26 H 1.09003 * 109.47258 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46824 * 239.99663 * 2 1 3 28 28 H 1.09000 * 109.46626 * 120.00165 * 2 1 3 29 29 H 1.08997 * 109.46646 * 60.82941 * 5 3 2 30 30 H 1.09001 * 109.45534 * 300.84672 * 5 3 2 31 31 H 1.09001 * 109.46875 * 59.99815 * 9 7 6 32 32 H 1.08999 * 109.47061 * 179.97438 * 9 7 6 33 33 H 1.08996 * 109.47404 * 300.00162 * 9 7 6 34 34 H 1.09000 * 109.46703 * 183.57110 * 10 7 6 35 35 H 1.08997 * 109.47351 * 303.57001 * 10 7 6 36 36 H 0.96996 * 120.00351 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.46308 * 58.27228 * 19 6 5 38 38 H 1.08999 * 109.46569 * 178.24735 * 19 6 5 39 39 H 1.08997 * 109.50332 * 299.24303 * 20 19 6 40 40 H 1.09000 * 109.50223 * 179.12354 * 20 19 6 41 41 H 1.00900 * 111.00198 * 180.02562 * 23 21 3 42 42 H 1.00907 * 110.99888 * 303.95234 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6069 1.9816 0.8424 5 6 1.6356 2.1273 -1.3074 6 7 2.1423 3.5056 -1.3166 7 6 1.6562 4.2374 -2.4940 8 1 2.1657 5.1987 -2.5602 9 6 1.9419 3.4207 -3.7558 10 6 0.1489 4.4668 -2.3653 11 6 -0.1254 5.3447 -1.1715 12 1 0.6959 5.7701 -0.6138 13 6 -1.4249 5.6046 -0.7911 14 7 -2.4250 5.0869 -1.4703 15 14 -1.7651 6.6922 0.6892 16 1 -1.1827 8.0385 0.4585 17 1 -3.2317 6.8140 0.8872 18 1 -1.1512 6.0879 1.8988 19 6 3.6089 3.5327 -1.2488 20 6 4.0723 2.8897 0.0605 21 6 3.5665 1.4458 0.1213 22 1 3.8574 0.9976 1.0714 23 7 4.1486 0.6747 -0.9853 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 0.5489 2.1394 -1.3901 30 1 2.0579 1.5796 -2.1499 31 1 1.4323 2.4594 -3.6895 32 1 1.5808 3.9635 -4.6294 33 1 3.0156 3.2572 -3.8475 34 1 -0.2228 4.9534 -3.2671 35 1 -0.3546 3.5089 -2.2354 36 1 -3.3392 5.2695 -1.2025 37 1 4.0217 2.9784 -2.0916 38 1 3.9554 4.5654 -1.2887 39 1 3.6711 3.4516 0.9039 40 1 5.1615 2.8959 0.1034 41 1 5.1558 0.6620 -0.9267 42 1 3.7762 -0.2629 -1.0079 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709976592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:17 Heat of formation + Delta-G solvation = -15.508107 kcal Electronic energy + Delta-G solvation = -18894.061271 eV Core-core repulsion = 16294.000625 eV Total energy + Delta-G solvation = -2600.060646 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.35835 -35.97557 -33.51933 -32.63550 -31.05185 -28.83294 -27.98299 -27.11522 -24.07453 -23.54103 -22.40737 -20.65335 -19.20788 -18.22250 -16.07582 -15.98935 -15.55529 -14.65296 -14.56298 -14.34446 -13.83182 -13.45705 -13.17955 -12.95383 -12.64344 -12.17405 -12.02496 -11.79812 -11.56844 -11.38509 -11.22056 -11.05948 -10.89382 -10.74975 -10.49940 -10.36125 -10.16948 -10.02460 -9.74739 -9.65888 -9.05804 -8.86539 -8.52922 -8.17689 -7.16544 -5.80947 -3.77623 3.45078 3.48424 3.52361 4.59184 4.62823 4.79104 4.98875 5.08185 5.26489 5.41957 5.55953 5.57938 5.73706 5.79072 5.93730 5.95909 5.98451 6.04771 6.11483 6.15828 6.19695 6.22871 6.29708 6.39644 6.43558 6.52572 6.56462 6.66039 6.76703 6.86494 6.93671 7.15502 7.27470 7.52636 7.68582 7.83497 8.11190 8.20413 8.25519 8.68391 9.27315 9.82907 11.31129 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021880 B = 0.007998 C = 0.007383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.422196 B = 3499.932047 C = 3791.359227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.080 4.080 4 H 0.080 0.920 5 C 0.073 3.927 6 N -0.511 5.511 7 C 0.088 3.912 8 H 0.064 0.936 9 C -0.180 4.180 10 C 0.031 3.969 11 C -0.484 4.484 12 H 0.058 0.942 13 C 0.050 3.950 14 N -0.905 5.905 15 Si 0.888 3.112 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.279 1.279 19 C 0.062 3.938 20 C -0.107 4.107 21 C 0.096 3.904 22 H 0.026 0.974 23 N -0.841 5.841 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.012 0.988 35 H 0.021 0.979 36 H 0.256 0.744 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.333 0.667 42 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.641 -9.774 1.761 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.099 4.099 4 H 0.098 0.902 5 C -0.055 4.055 6 N -0.234 5.234 7 C -0.020 4.020 8 H 0.082 0.918 9 C -0.239 4.239 10 C -0.006 4.006 11 C -0.522 4.522 12 H 0.076 0.924 13 C -0.149 4.149 14 N -0.546 5.546 15 Si 0.716 3.284 16 H -0.206 1.206 17 H -0.217 1.217 18 H -0.205 1.205 19 C -0.067 4.067 20 C -0.146 4.146 21 C -0.015 4.015 22 H 0.044 0.956 23 N -0.372 5.372 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.030 0.970 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.145 0.855 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.924 -8.976 1.716 14.243 hybrid contribution 0.422 -0.444 0.922 1.107 sum 11.346 -9.421 2.638 14.981 Atomic orbital electron populations 1.21795 0.95392 1.00806 1.03033 1.21521 0.96551 0.96608 1.00752 1.21277 0.93106 0.95242 1.00302 0.90203 1.21980 1.00462 0.88246 0.94837 1.62015 1.06523 1.13685 1.41155 1.21858 1.00077 0.94755 0.85290 0.91795 1.22488 0.99815 1.01323 1.00299 1.19170 0.87515 0.97212 0.96678 1.21114 0.91418 1.27886 1.11829 0.92418 1.24979 0.96562 0.96565 0.96755 1.69951 0.98591 1.45763 1.40333 0.86731 0.76591 0.81184 0.83850 1.20602 1.21742 1.20457 1.21901 0.89842 0.98856 0.96093 1.21588 0.98774 0.94754 0.99441 1.21382 0.95222 0.94086 0.90805 0.95612 1.58762 1.10234 1.19489 1.48741 0.92576 0.91757 0.93508 0.92138 0.93001 0.90249 0.94569 0.92871 0.93042 0.94117 0.96950 0.96035 0.93399 0.94494 0.92362 0.91022 0.92787 0.85497 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.67 37.16 0.36 -1.80 16 2 C -0.12 -1.51 4.88 -26.73 -0.13 -1.64 16 3 C -0.08 -1.23 2.17 -90.54 -0.20 -1.43 16 4 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 5 C 0.07 1.32 3.34 -3.83 -0.01 1.31 16 6 N -0.51 -10.04 4.26 -226.68 -0.97 -11.00 16 7 C 0.09 1.87 2.26 -67.71 -0.15 1.72 16 8 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 9 C -0.18 -3.31 8.40 37.16 0.31 -3.00 16 10 C 0.03 0.81 4.40 -27.88 -0.12 0.69 16 11 C -0.48 -13.79 8.80 -34.44 -0.30 -14.09 16 12 H 0.06 1.65 7.75 -52.49 -0.41 1.24 16 13 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 14 N -0.91 -27.58 13.29 55.43 0.74 -26.84 16 15 Si 0.89 22.41 29.54 -169.99 -5.02 17.38 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 C 0.06 1.02 5.03 -3.83 -0.02 1.00 16 20 C -0.11 -1.53 5.77 -26.64 -0.15 -1.68 16 21 C 0.10 1.27 3.14 -67.59 -0.21 1.06 16 22 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 23 N -0.84 -9.65 7.89 -4.56 -0.04 -9.69 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.06 1.02 6.59 -51.93 -0.34 0.68 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.74 6.82 -51.93 -0.35 0.38 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.68 4.75 -51.93 -0.25 1.44 16 30 H 0.04 0.65 6.12 -51.93 -0.32 0.33 16 31 H 0.05 0.98 6.44 -51.93 -0.33 0.65 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.68 6.93 -51.93 -0.36 0.32 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.02 0.59 6.39 -51.93 -0.33 0.26 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.04 0.61 6.52 -51.93 -0.34 0.27 16 38 H 0.06 0.97 7.98 -51.93 -0.41 0.56 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.33 3.23 9.04 -39.29 -0.36 2.87 16 42 H 0.34 3.49 7.08 -39.29 -0.28 3.21 16 LS Contribution 311.53 15.07 4.69 4.69 Total: -1.00 -29.99 311.53 -8.75 -38.74 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.43 Total: 3.20 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -0.73 Total: -16.48 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.27 Total: -47.53 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.99 -8.75 -38.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709976592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.235 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds