Wall clock time and date at job start Mon Mar 30 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47373 * 2 1 4 4 H 1.08992 * 109.50363 * 55.07915 * 3 2 1 5 5 C 1.53037 * 109.50061 * 295.00021 * 3 2 1 6 6 N 1.46854 * 109.52271 * 180.84236 * 5 3 2 7 7 C 1.46904 * 111.00034 * 185.83682 * 6 5 3 8 8 H 1.08997 * 109.46745 * 188.74525 * 7 6 5 9 9 C 1.53000 * 109.47106 * 308.74664 * 7 6 5 10 10 C 1.53003 * 109.46543 * 68.74470 * 7 6 5 11 11 C 1.50697 * 109.46986 * 63.57644 * 10 7 6 12 12 H 1.08001 * 120.00432 * 5.07651 * 11 10 7 13 13 C 1.37879 * 119.99641 * 185.08054 * 11 10 7 14 14 N 1.31510 * 120.00365 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99868 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47242 * 60.00001 * 15 13 11 17 17 H 1.48498 * 109.46985 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46986 * 299.99940 * 15 13 11 19 19 C 1.46845 * 111.19787 * 61.74271 * 6 5 3 20 20 C 1.53048 * 109.52250 * 298.25712 * 19 6 5 21 21 C 1.53120 * 109.53472 * 175.17726 * 3 2 1 22 22 H 1.08996 * 109.52393 * 297.51865 * 21 3 2 23 23 N 1.46904 * 109.52388 * 57.71055 * 21 3 2 24 24 H 1.08997 * 109.46824 * 300.00337 * 1 2 3 25 25 H 1.09000 * 109.46626 * 59.99835 * 1 2 3 26 26 H 1.09003 * 109.47258 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46824 * 239.99663 * 2 1 3 28 28 H 1.09000 * 109.46626 * 120.00165 * 2 1 3 29 29 H 1.08997 * 109.46646 * 60.82941 * 5 3 2 30 30 H 1.09001 * 109.45534 * 300.84672 * 5 3 2 31 31 H 1.09001 * 109.46875 * 59.99815 * 9 7 6 32 32 H 1.08999 * 109.47061 * 179.97438 * 9 7 6 33 33 H 1.08996 * 109.47404 * 300.00162 * 9 7 6 34 34 H 1.09000 * 109.46703 * 183.57110 * 10 7 6 35 35 H 1.08997 * 109.47351 * 303.57001 * 10 7 6 36 36 H 0.96996 * 120.00351 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.46308 * 58.27228 * 19 6 5 38 38 H 1.08999 * 109.46569 * 178.24735 * 19 6 5 39 39 H 1.08997 * 109.50332 * 299.24303 * 20 19 6 40 40 H 1.09000 * 109.50223 * 179.12354 * 20 19 6 41 41 H 1.00900 * 111.00198 * 180.02562 * 23 21 3 42 42 H 1.00907 * 110.99888 * 303.95234 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6069 1.9816 0.8424 5 6 1.6356 2.1273 -1.3074 6 7 2.1423 3.5056 -1.3166 7 6 1.6562 4.2374 -2.4940 8 1 2.1657 5.1987 -2.5602 9 6 1.9419 3.4207 -3.7558 10 6 0.1489 4.4668 -2.3653 11 6 -0.1254 5.3447 -1.1715 12 1 0.6959 5.7701 -0.6138 13 6 -1.4249 5.6046 -0.7911 14 7 -2.4250 5.0869 -1.4703 15 14 -1.7651 6.6922 0.6892 16 1 -1.1827 8.0385 0.4585 17 1 -3.2317 6.8140 0.8872 18 1 -1.1512 6.0879 1.8988 19 6 3.6089 3.5327 -1.2488 20 6 4.0723 2.8897 0.0605 21 6 3.5665 1.4458 0.1213 22 1 3.8574 0.9976 1.0714 23 7 4.1486 0.6747 -0.9853 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 0.5489 2.1394 -1.3901 30 1 2.0579 1.5796 -2.1499 31 1 1.4323 2.4594 -3.6895 32 1 1.5808 3.9635 -4.6294 33 1 3.0156 3.2572 -3.8475 34 1 -0.2228 4.9534 -3.2671 35 1 -0.3546 3.5089 -2.2354 36 1 -3.3392 5.2695 -1.2025 37 1 4.0217 2.9784 -2.0916 38 1 3.9554 4.5654 -1.2887 39 1 3.6711 3.4516 0.9039 40 1 5.1615 2.8959 0.1034 41 1 5.1558 0.6620 -0.9267 42 1 3.7762 -0.2629 -1.0079 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709976592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:17 Heat of formation + Delta-G solvation = -35.894391 kcal Electronic energy + Delta-G solvation = -18894.945286 eV Core-core repulsion = 16294.000625 eV Total energy + Delta-G solvation = -2600.944661 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69697 -37.44068 -34.93981 -34.44596 -32.54387 -30.18218 -29.47453 -28.81890 -25.48066 -25.23672 -24.02654 -21.86159 -20.77951 -19.55299 -18.32499 -17.19990 -16.73171 -16.52230 -15.93038 -15.73527 -15.23696 -14.75686 -14.61819 -14.44964 -13.92583 -13.80976 -13.66554 -13.30189 -13.10486 -12.98117 -12.69732 -12.55988 -12.46860 -12.34438 -12.23572 -11.88352 -11.77280 -11.44485 -11.23850 -11.05754 -11.02801 -10.74410 -10.44710 -9.48093 -8.66195 -8.07281 -6.11547 1.40763 1.43934 1.51211 2.48364 3.19665 3.32766 3.73384 3.85797 3.93180 4.10775 4.25552 4.33922 4.41262 4.52520 4.55483 4.58072 4.64807 4.68149 4.81321 4.83967 4.96052 5.02246 5.04528 5.10941 5.15082 5.21137 5.24366 5.27538 5.30613 5.42685 5.47224 5.56347 5.60434 5.74593 5.92412 6.37013 6.39800 6.62912 6.68598 6.76408 7.01131 7.53207 9.04607 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021880 B = 0.007998 C = 0.007383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.422196 B = 3499.932047 C = 3791.359227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C -0.079 4.079 4 H 0.052 0.948 5 C 0.083 3.917 6 N -0.532 5.532 7 C 0.095 3.905 8 H 0.059 0.941 9 C -0.167 4.167 10 C 0.040 3.960 11 C -0.495 4.495 12 H 0.054 0.946 13 C -0.004 4.004 14 N -0.940 5.940 15 Si 0.954 3.046 16 H -0.270 1.270 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.064 3.936 20 C -0.105 4.105 21 C 0.105 3.895 22 H 0.045 0.955 23 N -0.845 5.845 24 H 0.041 0.959 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.063 0.937 34 H -0.014 1.014 35 H -0.005 1.005 36 H 0.258 0.742 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.348 0.652 42 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.813 -10.694 2.757 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.099 4.099 4 H 0.070 0.930 5 C -0.044 4.044 6 N -0.256 5.256 7 C -0.014 4.014 8 H 0.077 0.923 9 C -0.226 4.226 10 C 0.002 3.998 11 C -0.533 4.533 12 H 0.072 0.928 13 C -0.200 4.200 14 N -0.582 5.582 15 Si 0.780 3.220 16 H -0.195 1.195 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.064 4.064 20 C -0.143 4.143 21 C -0.006 4.006 22 H 0.063 0.937 23 N -0.379 5.379 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.004 0.996 35 H 0.014 0.986 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.162 0.838 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 13.123 -9.903 2.711 16.662 hybrid contribution -0.268 -0.159 0.579 0.658 sum 12.855 -10.062 3.290 16.652 Atomic orbital electron populations 1.21787 0.96732 1.01607 1.00934 1.21472 0.95269 0.95222 1.02546 1.21239 0.95242 0.96063 0.97319 0.92952 1.21825 0.97855 0.87924 0.96835 1.61920 1.08891 1.14412 1.40395 1.21572 0.96531 0.95603 0.87665 0.92320 1.22324 1.01152 1.00430 0.98726 1.19007 0.90986 0.95075 0.94695 1.21403 0.91478 1.28019 1.12427 0.92755 1.25824 0.96421 0.98029 0.99746 1.70088 0.98937 1.47136 1.42061 0.85663 0.76581 0.79538 0.80180 1.19509 1.21243 1.19822 1.21943 0.87449 0.99159 0.97837 1.21588 1.00468 0.95022 0.97266 1.21204 0.93100 0.93937 0.92346 0.93687 1.58657 1.11374 1.19971 1.47851 0.93964 0.94606 0.91198 0.90734 0.90562 0.94415 0.94007 0.93365 0.92814 0.91842 0.99582 0.98638 0.93360 0.93808 0.92722 0.92479 0.89871 0.83848 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 9.67 71.98 0.70 -3.63 16 2 C -0.11 -2.59 4.88 30.59 0.15 -2.44 16 3 C -0.08 -2.37 2.17 -10.74 -0.02 -2.39 16 4 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 5 C 0.08 3.07 3.34 86.32 0.29 3.36 16 6 N -0.53 -21.04 4.26 -871.08 -3.71 -24.75 16 7 C 0.09 4.10 2.26 44.92 0.10 4.20 16 8 H 0.06 2.57 7.93 -2.39 -0.02 2.55 16 9 C -0.17 -6.09 8.40 71.98 0.60 -5.49 16 10 C 0.04 2.15 4.40 29.85 0.13 2.28 16 11 C -0.49 -29.06 8.80 25.60 0.23 -28.83 16 12 H 0.05 3.16 7.75 -2.91 -0.02 3.14 16 13 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 14 N -0.94 -59.05 13.29 21.45 0.28 -58.77 16 15 Si 0.95 46.62 29.54 68.60 2.03 48.65 16 16 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 18 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 19 C 0.06 2.02 5.03 86.33 0.43 2.45 16 20 C -0.11 -2.73 5.77 30.65 0.18 -2.56 16 21 C 0.11 2.48 3.14 44.99 0.14 2.62 16 22 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 23 N -0.85 -16.34 7.89 -168.34 -1.33 -17.67 16 24 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.03 1.19 6.59 -2.39 -0.02 1.18 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 1.62 6.82 -2.39 -0.02 1.60 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.04 1.69 4.75 -2.39 -0.01 1.68 16 30 H 0.04 1.48 6.12 -2.39 -0.01 1.46 16 31 H 0.05 1.78 6.44 -2.39 -0.02 1.77 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 2.02 6.93 -2.39 -0.02 2.00 16 34 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 35 H 0.00 -0.28 6.39 -2.39 -0.02 -0.29 16 36 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.04 1.33 6.52 -2.39 -0.02 1.32 16 38 H 0.05 1.75 7.98 -2.39 -0.02 1.73 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.35 5.25 9.04 -89.69 -0.81 4.44 16 42 H 0.35 5.82 7.08 -89.69 -0.64 5.18 16 Total: -1.00 -66.42 311.53 0.21 -66.21 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -0.45 Total: 16.55 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 3.39 Total: -30.23 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -4.75 Total: -101.19 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -66.42 0.21 -66.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709976592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.315 kcal (2) G-P(sol) polarization free energy of solvation -66.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds