Wall clock time and date at job start Mon Mar 30 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46748 * 2 1 4 4 H 1.09000 * 109.48860 * 56.88783 * 3 2 1 5 5 C 1.53048 * 109.50769 * 296.83002 * 3 2 1 6 6 N 1.46957 * 109.36295 * 181.62343 * 5 3 2 7 7 C 1.46903 * 111.00022 * 183.19019 * 6 5 3 8 8 H 1.09001 * 109.47570 * 187.74258 * 7 6 5 9 9 C 1.53006 * 109.46959 * 307.74280 * 7 6 5 10 10 C 1.53001 * 109.47076 * 67.74109 * 7 6 5 11 11 C 1.50702 * 109.47103 * 63.28089 * 10 7 6 12 12 H 1.07999 * 119.99980 * 5.00250 * 11 10 7 13 13 C 1.37874 * 119.99971 * 185.00469 * 11 10 7 14 14 N 1.31518 * 119.99953 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99957 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47286 * 90.00191 * 15 13 11 17 17 H 1.48505 * 109.47247 * 210.00227 * 15 13 11 18 18 H 1.48503 * 109.47460 * 330.00070 * 15 13 11 19 19 C 1.46957 * 110.88343 * 59.32083 * 6 5 3 20 20 C 1.53048 * 109.36352 * 300.67883 * 19 6 5 21 21 N 1.46957 * 109.48849 * 176.92902 * 3 2 1 22 22 C 1.46903 * 110.99939 * 303.18031 * 21 3 2 23 23 H 1.08994 * 109.47642 * 65.89011 * 1 2 3 24 24 H 1.09001 * 109.47167 * 185.89102 * 1 2 3 25 25 H 1.09001 * 109.47328 * 305.88479 * 1 2 3 26 26 H 1.09000 * 109.47052 * 240.00577 * 2 1 3 27 27 H 1.08997 * 109.47742 * 119.99970 * 2 1 3 28 28 H 1.09001 * 109.48937 * 61.65476 * 5 3 2 29 29 H 1.09000 * 109.48890 * 301.58620 * 5 3 2 30 30 H 1.09006 * 109.46831 * 60.00090 * 9 7 6 31 31 H 1.08993 * 109.46972 * 299.99785 * 9 7 6 32 32 H 1.08995 * 109.46884 * 179.97438 * 9 7 6 33 33 H 1.09001 * 109.47216 * 183.28224 * 10 7 6 34 34 H 1.09000 * 109.47535 * 303.27943 * 10 7 6 35 35 H 0.97003 * 119.99975 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.48751 * 60.64766 * 19 6 5 37 37 H 1.08997 * 109.48867 * 180.71182 * 19 6 5 38 38 H 1.09001 * 109.48937 * 178.36772 * 20 19 6 39 39 H 1.08999 * 109.49101 * 298.41083 * 20 19 6 40 40 H 1.08996 * 109.47029 * 300.04332 * 22 21 3 41 41 H 1.08990 * 109.47312 * 60.04915 * 22 21 3 42 42 H 1.09000 * 109.47008 * 180.02562 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6318 1.9725 0.8607 5 6 1.5963 2.1414 -1.2873 6 7 2.1204 3.5143 -1.3019 7 6 1.6527 4.2438 -2.4881 8 1 2.1616 5.2059 -2.5471 9 6 1.9608 3.4260 -3.7441 10 6 0.1432 4.4708 -2.3849 11 6 -0.1532 5.3437 -1.1926 12 1 0.6577 5.7670 -0.6185 13 6 -1.4594 5.6018 -0.8349 14 7 -2.4469 5.0858 -1.5339 15 14 -1.8267 6.6831 0.6432 16 1 -1.9274 8.0993 0.2078 17 1 -3.1113 6.2617 1.2579 18 1 -0.7336 6.5481 1.6393 19 6 3.5881 3.5155 -1.2277 20 6 4.0317 2.8166 0.0596 21 7 3.5076 1.4437 0.0742 22 6 3.9753 0.7142 1.2604 23 1 -0.3634 0.4198 -0.9379 24 1 -0.3633 -1.0222 0.1055 25 1 -0.3634 0.6024 0.8326 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.5075 2.1673 -1.3304 29 1 1.9818 1.5959 -2.1487 30 1 1.4518 2.4639 -3.6851 31 1 3.0361 3.2643 -3.8176 32 1 1.6133 3.9671 -4.6241 33 1 -0.2135 4.9602 -3.2912 34 1 -0.3613 3.5117 -2.2674 35 1 -3.3659 5.2671 -1.2820 36 1 3.9962 2.9855 -2.0884 37 1 3.9514 4.5431 -1.2273 38 1 5.1206 2.7906 0.1027 39 1 3.6466 3.3624 0.9210 40 1 3.5789 1.1884 2.1582 41 1 3.6294 -0.3182 1.2118 42 1 5.0647 0.7310 1.2911 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709998575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:20 Heat of formation + Delta-G solvation = 1.429725 kcal Electronic energy + Delta-G solvation = -18812.750915 eV Core-core repulsion = 16213.424749 eV Total energy + Delta-G solvation = -2599.326166 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.41618 -36.32915 -33.64303 -32.75596 -30.94013 -28.88989 -27.35195 -26.88535 -24.28653 -23.65127 -22.79043 -20.94299 -19.63174 -18.61639 -16.15842 -15.78334 -15.29997 -14.84740 -14.48976 -14.29610 -14.12524 -13.61167 -13.17950 -13.06991 -12.66961 -12.37451 -11.99613 -11.91505 -11.67070 -11.54782 -11.33437 -11.19842 -11.11523 -10.86759 -10.55634 -10.44787 -10.41284 -10.30182 -10.00268 -9.75696 -9.12558 -8.93655 -8.23619 -8.12248 -7.38230 -5.86435 -3.83572 3.39446 3.45635 3.50753 4.11332 4.56245 4.60145 5.08544 5.22765 5.23084 5.50042 5.52750 5.53247 5.60304 5.64429 5.73006 5.79078 5.82613 5.88334 5.92480 5.99938 6.04768 6.09542 6.14482 6.19235 6.27473 6.34522 6.45507 6.51988 6.59828 6.69154 6.74918 7.03984 7.24706 7.31650 7.58969 7.72881 7.96700 8.07588 8.15626 8.61198 9.21558 9.77507 11.25552 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020559 B = 0.007929 C = 0.007372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.624551 B = 3530.545389 C = 3797.013287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C 0.086 3.914 4 H 0.050 0.950 5 C 0.066 3.934 6 N -0.512 5.512 7 C 0.087 3.913 8 H 0.067 0.933 9 C -0.183 4.183 10 C 0.030 3.970 11 C -0.486 4.486 12 H 0.058 0.942 13 C 0.051 3.949 14 N -0.904 5.904 15 Si 0.887 3.113 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.275 1.275 19 C 0.054 3.946 20 C 0.060 3.940 21 N -0.542 5.542 22 C 0.023 3.977 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.015 0.985 34 H 0.022 0.978 35 H 0.257 0.743 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.023 0.977 41 H 0.069 0.931 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.843 -8.823 2.271 14.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.023 4.023 4 H 0.068 0.932 5 C -0.063 4.063 6 N -0.235 5.235 7 C -0.021 4.021 8 H 0.085 0.915 9 C -0.242 4.242 10 C -0.007 4.007 11 C -0.525 4.525 12 H 0.076 0.924 13 C -0.148 4.148 14 N -0.545 5.545 15 Si 0.716 3.284 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.200 1.200 19 C -0.075 4.075 20 C -0.068 4.068 21 N -0.267 5.267 22 C -0.126 4.126 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.087 0.913 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.659 -8.808 2.276 14.013 hybrid contribution -0.269 0.621 0.860 1.094 sum 10.390 -8.187 3.135 13.595 Atomic orbital electron populations 1.21791 0.95164 1.01095 1.03007 1.21581 0.96031 0.95817 1.01839 1.21787 0.86183 0.95449 0.98853 0.93156 1.22205 1.01164 0.88191 0.94704 1.62268 1.06192 1.14014 1.41060 1.21896 1.00379 0.94851 0.84955 0.91463 1.22509 0.99784 1.01445 1.00446 1.19186 0.87263 0.97320 0.96902 1.21140 0.91450 1.28207 1.11688 0.92366 1.24980 0.96607 0.96514 0.96726 1.69964 0.98829 1.45641 1.40056 0.86669 0.77454 0.80780 0.83507 1.21028 1.21583 1.20020 1.22135 0.90114 0.99316 0.95941 1.22129 0.98577 0.88049 0.98093 1.62193 1.09974 1.15233 1.39266 1.22380 1.00152 0.98983 0.91052 0.91884 0.93087 0.92467 0.91647 0.92202 0.88998 0.94943 0.92778 0.94122 0.92670 0.96718 0.95993 0.93381 0.94912 0.90996 0.91188 0.94122 0.95888 0.91272 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.47 37.16 0.35 -1.78 16 2 C -0.11 -1.56 5.19 -26.73 -0.14 -1.70 16 3 C 0.09 1.39 2.05 -67.66 -0.14 1.25 16 4 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 5 C 0.07 1.21 3.67 -3.77 -0.01 1.19 16 6 N -0.51 -10.04 4.32 -226.48 -0.98 -11.02 16 7 C 0.09 1.80 2.27 -67.71 -0.15 1.65 16 8 H 0.07 1.41 8.00 -51.93 -0.42 0.99 16 9 C -0.18 -3.24 8.41 37.16 0.31 -2.93 16 10 C 0.03 0.77 4.38 -27.88 -0.12 0.65 16 11 C -0.49 -13.69 8.79 -34.44 -0.30 -13.99 16 12 H 0.06 1.65 7.75 -52.49 -0.41 1.24 16 13 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 14 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 15 Si 0.89 22.22 29.54 -169.99 -5.02 17.19 16 16 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 C 0.05 0.88 5.36 -3.77 -0.02 0.86 16 20 C 0.06 0.89 5.62 -3.77 -0.02 0.87 16 21 N -0.54 -8.00 4.78 -234.73 -1.12 -9.12 16 22 C 0.02 0.27 9.13 60.07 0.55 0.82 16 23 H 0.06 0.96 6.86 -51.93 -0.36 0.60 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.73 6.19 -51.93 -0.32 0.41 16 28 H 0.09 1.92 4.93 -51.93 -0.26 1.66 16 29 H 0.03 0.59 6.41 -51.93 -0.33 0.25 16 30 H 0.05 0.96 6.39 -51.93 -0.33 0.63 16 31 H 0.04 0.65 6.82 -51.93 -0.35 0.30 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.59 6.41 -51.93 -0.33 0.26 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.03 0.53 6.82 -51.93 -0.35 0.18 16 37 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 38 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.76 6.18 -51.93 -0.32 0.44 16 42 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 LS Contribution 313.55 15.07 4.73 4.73 Total: -1.00 -29.74 313.55 -9.02 -38.76 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.56 Total: -2.29 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 0.20 Total: -11.74 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -1.36 Total: -46.65 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.74 -9.02 -38.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709998575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.185 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds