Wall clock time and date at job start Mon Mar 30 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46748 * 2 1 4 4 H 1.09000 * 109.48860 * 56.88783 * 3 2 1 5 5 C 1.53048 * 109.50769 * 296.83002 * 3 2 1 6 6 N 1.46957 * 109.36295 * 181.62343 * 5 3 2 7 7 C 1.46903 * 111.00022 * 183.19019 * 6 5 3 8 8 H 1.09001 * 109.47570 * 187.74258 * 7 6 5 9 9 C 1.53006 * 109.46959 * 307.74280 * 7 6 5 10 10 C 1.53001 * 109.47076 * 67.74109 * 7 6 5 11 11 C 1.50702 * 109.47103 * 63.28089 * 10 7 6 12 12 H 1.07999 * 119.99980 * 5.00250 * 11 10 7 13 13 C 1.37874 * 119.99971 * 185.00469 * 11 10 7 14 14 N 1.31518 * 119.99953 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99957 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47286 * 90.00191 * 15 13 11 17 17 H 1.48505 * 109.47247 * 210.00227 * 15 13 11 18 18 H 1.48503 * 109.47460 * 330.00070 * 15 13 11 19 19 C 1.46957 * 110.88343 * 59.32083 * 6 5 3 20 20 C 1.53048 * 109.36352 * 300.67883 * 19 6 5 21 21 N 1.46957 * 109.48849 * 176.92902 * 3 2 1 22 22 C 1.46903 * 110.99939 * 303.18031 * 21 3 2 23 23 H 1.08994 * 109.47642 * 65.89011 * 1 2 3 24 24 H 1.09001 * 109.47167 * 185.89102 * 1 2 3 25 25 H 1.09001 * 109.47328 * 305.88479 * 1 2 3 26 26 H 1.09000 * 109.47052 * 240.00577 * 2 1 3 27 27 H 1.08997 * 109.47742 * 119.99970 * 2 1 3 28 28 H 1.09001 * 109.48937 * 61.65476 * 5 3 2 29 29 H 1.09000 * 109.48890 * 301.58620 * 5 3 2 30 30 H 1.09006 * 109.46831 * 60.00090 * 9 7 6 31 31 H 1.08993 * 109.46972 * 299.99785 * 9 7 6 32 32 H 1.08995 * 109.46884 * 179.97438 * 9 7 6 33 33 H 1.09001 * 109.47216 * 183.28224 * 10 7 6 34 34 H 1.09000 * 109.47535 * 303.27943 * 10 7 6 35 35 H 0.97003 * 119.99975 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.48751 * 60.64766 * 19 6 5 37 37 H 1.08997 * 109.48867 * 180.71182 * 19 6 5 38 38 H 1.09001 * 109.48937 * 178.36772 * 20 19 6 39 39 H 1.08999 * 109.49101 * 298.41083 * 20 19 6 40 40 H 1.08996 * 109.47029 * 300.04332 * 22 21 3 41 41 H 1.08990 * 109.47312 * 60.04915 * 22 21 3 42 42 H 1.09000 * 109.47008 * 180.02562 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6318 1.9725 0.8607 5 6 1.5963 2.1414 -1.2873 6 7 2.1204 3.5143 -1.3019 7 6 1.6527 4.2438 -2.4881 8 1 2.1616 5.2059 -2.5471 9 6 1.9608 3.4260 -3.7441 10 6 0.1432 4.4708 -2.3849 11 6 -0.1532 5.3437 -1.1926 12 1 0.6577 5.7670 -0.6185 13 6 -1.4594 5.6018 -0.8349 14 7 -2.4469 5.0858 -1.5339 15 14 -1.8267 6.6831 0.6432 16 1 -1.9274 8.0993 0.2078 17 1 -3.1113 6.2617 1.2579 18 1 -0.7336 6.5481 1.6393 19 6 3.5881 3.5155 -1.2277 20 6 4.0317 2.8166 0.0596 21 7 3.5076 1.4437 0.0742 22 6 3.9753 0.7142 1.2604 23 1 -0.3634 0.4198 -0.9379 24 1 -0.3633 -1.0222 0.1055 25 1 -0.3634 0.6024 0.8326 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.5075 2.1673 -1.3304 29 1 1.9818 1.5959 -2.1487 30 1 1.4518 2.4639 -3.6851 31 1 3.0361 3.2643 -3.8176 32 1 1.6133 3.9671 -4.6241 33 1 -0.2135 4.9602 -3.2912 34 1 -0.3613 3.5117 -2.2674 35 1 -3.3659 5.2671 -1.2820 36 1 3.9962 2.9855 -2.0884 37 1 3.9514 4.5431 -1.2273 38 1 5.1206 2.7906 0.1027 39 1 3.6466 3.3624 0.9210 40 1 3.5789 1.1884 2.1582 41 1 3.6294 -0.3182 1.2118 42 1 5.0647 0.7310 1.2911 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709998575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:19 Heat of formation + Delta-G solvation = -18.392960 kcal Electronic energy + Delta-G solvation = -18813.610491 eV Core-core repulsion = 16213.424749 eV Total energy + Delta-G solvation = -2600.185742 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77022 -37.78595 -35.01436 -34.65039 -32.55641 -30.18258 -29.27370 -28.13892 -25.57906 -25.29890 -24.39586 -22.24776 -21.08081 -20.10836 -18.36223 -17.18186 -16.67835 -16.38762 -16.12298 -15.60929 -15.42678 -15.02499 -14.73208 -14.44935 -13.94981 -13.88028 -13.71411 -13.30708 -13.18595 -13.07803 -12.70065 -12.60386 -12.50843 -12.42398 -12.37378 -12.04199 -11.97007 -11.68235 -11.59167 -11.14007 -11.09851 -10.90102 -10.47808 -9.31582 -8.88546 -8.09919 -6.14074 1.39294 1.40077 1.51288 2.46176 2.96053 3.10652 3.27296 3.86998 3.98247 4.11142 4.24364 4.32834 4.33251 4.40931 4.44999 4.53478 4.55413 4.59674 4.65925 4.71401 4.83124 4.86576 4.93533 4.98771 5.02419 5.06893 5.09318 5.16161 5.20355 5.30712 5.33534 5.42186 5.49562 5.69326 5.89347 6.08171 6.13739 6.34115 6.46851 6.55561 6.98634 7.50951 9.02067 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020559 B = 0.007929 C = 0.007372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.624551 B = 3530.545389 C = 3797.013287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.106 4.106 3 C 0.091 3.909 4 H 0.021 0.979 5 C 0.074 3.926 6 N -0.536 5.536 7 C 0.095 3.905 8 H 0.065 0.935 9 C -0.171 4.171 10 C 0.038 3.962 11 C -0.496 4.496 12 H 0.053 0.947 13 C -0.003 4.003 14 N -0.938 5.938 15 Si 0.953 3.047 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.271 1.271 19 C 0.055 3.945 20 C 0.062 3.938 21 N -0.543 5.543 22 C 0.022 3.978 23 H 0.040 0.960 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.058 0.942 33 H -0.010 1.010 34 H -0.003 1.003 35 H 0.258 0.742 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.024 0.976 40 H 0.018 0.982 41 H 0.082 0.918 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.832 -9.605 3.159 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.018 4.018 4 H 0.039 0.961 5 C -0.054 4.054 6 N -0.260 5.260 7 C -0.014 4.014 8 H 0.083 0.917 9 C -0.230 4.230 10 C 0.000 4.000 11 C -0.535 4.535 12 H 0.072 0.928 13 C -0.199 4.199 14 N -0.580 5.580 15 Si 0.779 3.221 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.195 1.195 19 C -0.073 4.073 20 C -0.066 4.066 21 N -0.268 5.268 22 C -0.126 4.126 23 H 0.060 0.940 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.008 0.992 34 H 0.016 0.984 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.042 0.958 40 H 0.036 0.964 41 H 0.101 0.899 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.670 -9.591 3.167 16.204 hybrid contribution -0.876 0.860 0.575 1.356 sum 11.794 -8.731 3.742 15.144 Atomic orbital electron populations 1.21770 0.95795 1.02128 1.01180 1.21534 0.95376 0.94241 1.03211 1.21672 0.87518 0.96396 0.96203 0.96089 1.22052 0.99021 0.88067 0.96307 1.62159 1.08619 1.14588 1.40589 1.21612 0.96811 0.95768 0.87180 0.91708 1.22357 1.01240 1.00559 0.98845 1.19030 0.90804 0.95240 0.94887 1.21426 0.91453 1.28293 1.12292 0.92832 1.25797 0.96547 0.97944 0.99599 1.70090 0.99170 1.47014 1.41757 0.85631 0.77270 0.79194 0.80017 1.20015 1.21177 1.19534 1.22204 0.87720 1.00159 0.97254 1.22156 1.00238 0.87841 0.96358 1.62231 1.08469 1.15232 1.40833 1.22481 1.01426 0.99110 0.89543 0.94047 0.90569 0.93982 0.90851 0.90005 0.92573 0.94384 0.93242 0.91711 0.92321 0.99155 0.98433 0.93302 0.94022 0.90476 0.88084 0.95810 0.96358 0.89932 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 9.47 71.98 0.68 -3.51 16 2 C -0.11 -2.73 5.19 30.59 0.16 -2.57 16 3 C 0.09 2.90 2.05 44.92 0.09 2.99 16 4 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 5 C 0.07 2.75 3.67 86.31 0.32 3.07 16 6 N -0.54 -21.06 4.32 -870.46 -3.76 -24.82 16 7 C 0.09 3.96 2.27 44.92 0.10 4.06 16 8 H 0.06 2.72 8.00 -2.39 -0.02 2.70 16 9 C -0.17 -5.96 8.41 71.98 0.61 -5.35 16 10 C 0.04 2.00 4.38 29.85 0.13 2.13 16 11 C -0.50 -28.69 8.79 25.60 0.23 -28.47 16 12 H 0.05 3.08 7.75 -2.91 -0.02 3.06 16 13 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 14 N -0.94 -58.10 13.29 21.45 0.28 -57.82 16 15 Si 0.95 46.21 29.54 68.60 2.03 48.23 16 16 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 18 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 19 C 0.05 1.71 5.36 86.31 0.46 2.17 16 20 C 0.06 1.71 5.62 86.31 0.49 2.20 16 21 N -0.54 -14.78 4.78 -896.57 -4.29 -19.07 16 22 C 0.02 0.46 9.13 127.69 1.17 1.63 16 23 H 0.04 1.31 6.86 -2.39 -0.02 1.29 16 24 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.08 1.77 6.19 -2.39 -0.01 1.76 16 28 H 0.06 2.48 4.93 -2.39 -0.01 2.47 16 29 H 0.04 1.36 6.41 -2.39 -0.02 1.34 16 30 H 0.05 1.75 6.39 -2.38 -0.02 1.74 16 31 H 0.06 1.94 6.82 -2.39 -0.02 1.92 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 34 H 0.00 -0.15 6.41 -2.39 -0.02 -0.17 16 35 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 36 H 0.04 1.24 6.82 -2.39 -0.02 1.22 16 37 H 0.08 2.31 8.06 -2.39 -0.02 2.29 16 38 H 0.10 2.18 8.13 -2.39 -0.02 2.16 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.08 1.51 6.18 -2.39 -0.01 1.50 16 42 H 0.08 1.42 8.13 -2.39 -0.02 1.40 16 Total: -1.00 -65.06 313.55 0.11 -64.95 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.96 Total: 9.90 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 4.89 Total: -21.37 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -7.76 Total: -101.71 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -65.06 0.11 -64.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709998575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.555 kcal (2) G-P(sol) polarization free energy of solvation -65.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds