Wall clock time and date at job start Mon Mar 30 2020 03:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46738 * 2 1 4 4 H 1.08999 * 109.47000 * 179.41087 * 3 2 1 5 5 C 1.50704 * 109.47288 * 299.40501 * 3 2 1 6 6 H 1.07996 * 119.99959 * 119.99426 * 5 3 2 7 7 C 1.37876 * 119.99813 * 300.00414 * 5 3 2 8 8 N 1.31516 * 120.00234 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99958 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47132 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47276 * 120.00270 * 9 7 5 12 12 H 1.48506 * 109.47145 * 240.00157 * 9 7 5 13 13 N 1.46901 * 109.47160 * 59.40534 * 3 2 1 14 14 C 1.46901 * 110.99943 * 80.94154 * 13 3 2 15 15 C 1.52994 * 109.47045 * 189.70362 * 14 13 3 16 16 H 1.09003 * 110.73348 * 62.81699 * 15 14 13 17 17 C 1.54936 * 110.66870 * 185.91650 * 15 14 13 18 18 C 1.54598 * 103.08625 * 155.93494 * 17 15 14 19 19 C 1.54002 * 105.13571 * 337.95496 * 18 17 15 20 20 N 1.47900 * 107.05864 * 358.77657 * 19 18 17 21 21 C 1.46898 * 111.00036 * 145.84587 * 20 19 18 22 22 C 1.53004 * 109.47043 * 67.84361 * 21 20 19 23 23 H 1.09010 * 109.47258 * 305.10307 * 1 2 3 24 24 H 1.08994 * 109.47476 * 65.10261 * 1 2 3 25 25 H 1.09001 * 109.47263 * 185.10969 * 1 2 3 26 26 H 1.08994 * 109.47089 * 239.99994 * 2 1 3 27 27 H 1.09004 * 109.47138 * 119.99457 * 2 1 3 28 28 H 0.97002 * 120.00217 * 180.02562 * 8 7 5 29 29 H 1.00898 * 110.99823 * 204.88747 * 13 3 2 30 30 H 1.08990 * 109.47643 * 69.69550 * 14 13 3 31 31 H 1.09007 * 109.46815 * 309.69690 * 14 13 3 32 32 H 1.09001 * 110.72305 * 37.48743 * 17 15 14 33 33 H 1.08999 * 110.72452 * 274.38263 * 17 15 14 34 34 H 1.09001 * 110.30913 * 96.86698 * 18 17 15 35 35 H 1.08998 * 110.31192 * 219.03905 * 18 17 15 36 36 H 1.08996 * 109.91420 * 118.13135 * 19 18 17 37 37 H 1.08995 * 109.91355 * 239.42130 * 19 18 17 38 38 H 1.09001 * 109.47089 * 187.84247 * 21 20 19 39 39 H 1.08997 * 109.46900 * 307.84342 * 21 20 19 40 40 H 1.08997 * 109.47288 * 60.00219 * 22 21 20 41 41 H 1.09002 * 109.46864 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.47085 * 299.99889 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4426 0.0106 5 6 1.5496 2.1487 -1.2378 6 1 0.9277 3.0270 -1.1478 7 6 1.8950 1.6733 -2.4851 8 7 2.6518 0.6033 -2.5947 9 14 1.2867 2.5481 -4.0193 10 1 0.4569 3.7156 -3.6273 11 1 2.4492 3.0124 -4.8183 12 1 0.4698 1.6115 -4.8322 13 7 1.5385 2.1392 1.1922 14 6 2.3556 1.8206 2.3707 15 6 1.6710 2.3616 3.6273 16 1 0.7056 1.8788 3.7791 17 6 2.5782 2.1724 4.8689 18 6 2.0737 3.2637 5.8408 19 6 1.3776 4.3072 4.9473 20 7 1.5127 3.8413 3.5501 21 6 0.3297 4.2029 2.7579 22 6 0.2736 5.7227 2.5898 23 1 -0.3634 0.5910 0.8408 24 1 -0.3634 0.4326 -0.9321 25 1 -0.3634 -1.0236 0.0915 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 2.8950 0.2691 -3.4722 29 1 1.4986 3.1356 1.0387 30 1 3.3386 2.2795 2.2662 31 1 2.4665 0.7394 2.4543 32 1 3.6242 2.3389 4.6113 33 1 2.4416 1.1801 5.2988 34 1 1.3635 2.8393 6.5505 35 1 2.9124 3.7171 6.3689 36 1 0.3233 4.3802 5.2141 37 1 1.8609 5.2771 5.0637 38 1 0.3910 3.7310 1.7772 39 1 -0.5693 3.8605 3.2703 40 1 1.1725 6.0650 2.0774 41 1 -0.6045 5.9910 2.0024 42 1 0.2123 6.1946 3.5705 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036679887.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:05 Heat of formation + Delta-G solvation = 0.586078 kcal Electronic energy + Delta-G solvation = -18453.854856 eV Core-core repulsion = 15854.492107 eV Total energy + Delta-G solvation = -2599.362749 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.09950 -36.00628 -33.24793 -32.69155 -30.86316 -28.91620 -28.41590 -26.14214 -23.94975 -23.23522 -21.95429 -20.33618 -19.84250 -18.85804 -16.76530 -15.91694 -15.29823 -14.82859 -14.40969 -14.01726 -13.56956 -13.47095 -13.16602 -12.81536 -12.51877 -12.14781 -12.03597 -11.87945 -11.56753 -11.30280 -11.17522 -11.03561 -10.90615 -10.82263 -10.48851 -10.46227 -10.36172 -10.08303 -9.87846 -9.60609 -9.28929 -8.68903 -8.43411 -8.13051 -7.15151 -5.97702 -4.02495 3.30840 3.39031 3.42845 4.21701 4.43412 4.74214 4.86509 5.05181 5.27473 5.34520 5.43986 5.53645 5.60490 5.70021 5.76482 5.83104 5.88998 5.98666 6.02412 6.07109 6.12740 6.28559 6.31263 6.43263 6.55052 6.61050 6.64712 6.73418 6.89797 7.22763 7.26002 7.36361 7.41836 7.53448 7.76822 7.84587 7.89060 8.34370 8.46546 8.74304 9.07089 9.62233 11.08434 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028463 B = 0.006529 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.505107 B = 4287.289647 C = 4841.451672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.103 4.103 3 C 0.214 3.786 4 H -0.002 1.002 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.688 5.688 14 C 0.076 3.924 15 C 0.072 3.928 16 H 0.056 0.944 17 C -0.120 4.120 18 C -0.130 4.130 19 C 0.037 3.963 20 N -0.511 5.511 21 C 0.026 3.974 22 C -0.146 4.146 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.011 0.989 26 H 0.086 0.914 27 H 0.009 0.991 28 H 0.259 0.741 29 H 0.335 0.665 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.027 0.973 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.357 4.659 13.254 14.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.142 4.142 3 C 0.107 3.893 4 H 0.015 0.985 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.323 5.323 14 C -0.055 4.055 15 C -0.036 4.036 16 H 0.074 0.926 17 C -0.159 4.159 18 C -0.168 4.168 19 C -0.092 4.092 20 N -0.237 5.237 21 C -0.102 4.102 22 C -0.204 4.204 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.030 0.970 26 H 0.104 0.896 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.157 0.843 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.311 4.327 12.966 13.863 hybrid contribution -0.243 0.547 -0.646 0.881 sum -2.554 4.875 12.320 13.493 Atomic orbital electron populations 1.21433 0.97617 0.97026 1.01511 1.21446 0.94917 0.98436 0.99389 1.19107 0.92774 0.91356 0.86074 0.98482 1.21186 1.31254 1.11805 0.90292 0.92368 1.24881 0.95128 0.95029 0.98892 1.69897 1.36778 1.22757 1.23478 0.86544 0.78524 0.79686 0.83269 1.19787 1.21193 1.21088 1.60949 1.53157 1.13581 1.04591 1.21760 0.94366 0.99194 0.90174 1.22919 0.97903 0.87785 0.95040 0.92634 1.22501 1.00245 0.98134 0.95031 1.22379 1.00046 0.96597 0.97774 1.22822 0.98581 0.98724 0.89046 1.64839 1.38195 1.10952 1.09671 1.22683 0.90243 0.96302 1.00955 1.21767 1.01940 0.95746 1.00905 0.93492 0.93032 0.96961 0.89562 0.97278 0.93104 0.84266 0.95681 0.91574 0.90833 0.91371 0.91976 0.91432 0.94333 0.90996 0.86854 0.95467 0.91971 0.92570 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.49 37.16 0.35 -2.31 16 2 C -0.10 -2.51 5.53 -26.73 -0.15 -2.66 16 3 C 0.21 5.34 2.28 -68.86 -0.16 5.18 16 4 H 0.00 -0.07 7.92 -51.93 -0.41 -0.48 16 5 C -0.51 -13.62 7.46 -34.44 -0.26 -13.88 16 6 H 0.06 1.56 7.68 -52.49 -0.40 1.16 16 7 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -25.32 11.31 55.43 0.63 -24.70 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.69 -14.37 4.36 -107.95 -0.47 -14.84 16 14 C 0.08 1.38 5.29 -3.83 -0.02 1.36 16 15 C 0.07 1.10 2.76 -65.52 -0.18 0.92 16 16 H 0.06 0.90 8.02 -51.93 -0.42 0.48 16 17 C -0.12 -1.52 6.48 -24.87 -0.16 -1.68 16 18 C -0.13 -1.43 6.93 -25.37 -0.18 -1.60 16 19 C 0.04 0.45 5.69 -2.75 -0.02 0.44 16 20 N -0.51 -7.61 4.93 -222.24 -1.10 -8.70 16 21 C 0.03 0.40 5.10 -3.82 -0.02 0.38 16 22 C -0.15 -1.91 9.94 37.16 0.37 -1.54 16 23 H 0.05 1.01 7.43 -51.92 -0.39 0.63 16 24 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.09 2.34 6.05 -51.93 -0.31 2.03 16 27 H 0.01 0.20 7.10 -51.93 -0.37 -0.17 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.34 7.05 5.47 -39.29 -0.21 6.83 16 30 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 31 H 0.07 1.23 6.98 -51.93 -0.36 0.87 16 32 H 0.07 0.95 8.03 -51.93 -0.42 0.53 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.46 7.60 -51.93 -0.39 0.07 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.11 1.97 4.37 -51.93 -0.23 1.74 16 39 H 0.03 0.40 7.88 -51.93 -0.41 -0.01 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 LS Contribution 316.53 15.07 4.77 4.77 Total: -1.00 -27.37 316.53 -9.31 -36.68 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.61 Total: 4.34 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -0.51 Total: -13.79 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.94 Total: -48.24 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.37 -9.31 -36.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036679887.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.263 kcal (2) G-P(sol) polarization free energy of solvation -27.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds