Wall clock time and date at job start Mon Mar 30 2020 03:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46738 * 2 1 4 4 H 1.08999 * 109.47000 * 179.41087 * 3 2 1 5 5 C 1.50704 * 109.47288 * 299.40501 * 3 2 1 6 6 H 1.07996 * 119.99959 * 119.99426 * 5 3 2 7 7 C 1.37876 * 119.99813 * 300.00414 * 5 3 2 8 8 N 1.31516 * 120.00234 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99958 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47132 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47276 * 120.00270 * 9 7 5 12 12 H 1.48506 * 109.47145 * 240.00157 * 9 7 5 13 13 N 1.46901 * 109.47160 * 59.40534 * 3 2 1 14 14 C 1.46901 * 110.99943 * 80.94154 * 13 3 2 15 15 C 1.52994 * 109.47045 * 189.70362 * 14 13 3 16 16 H 1.09003 * 110.73348 * 62.81699 * 15 14 13 17 17 C 1.54936 * 110.66870 * 185.91650 * 15 14 13 18 18 C 1.54598 * 103.08625 * 155.93494 * 17 15 14 19 19 C 1.54002 * 105.13571 * 337.95496 * 18 17 15 20 20 N 1.47900 * 107.05864 * 358.77657 * 19 18 17 21 21 C 1.46898 * 111.00036 * 145.84587 * 20 19 18 22 22 C 1.53004 * 109.47043 * 67.84361 * 21 20 19 23 23 H 1.09010 * 109.47258 * 305.10307 * 1 2 3 24 24 H 1.08994 * 109.47476 * 65.10261 * 1 2 3 25 25 H 1.09001 * 109.47263 * 185.10969 * 1 2 3 26 26 H 1.08994 * 109.47089 * 239.99994 * 2 1 3 27 27 H 1.09004 * 109.47138 * 119.99457 * 2 1 3 28 28 H 0.97002 * 120.00217 * 180.02562 * 8 7 5 29 29 H 1.00898 * 110.99823 * 204.88747 * 13 3 2 30 30 H 1.08990 * 109.47643 * 69.69550 * 14 13 3 31 31 H 1.09007 * 109.46815 * 309.69690 * 14 13 3 32 32 H 1.09001 * 110.72305 * 37.48743 * 17 15 14 33 33 H 1.08999 * 110.72452 * 274.38263 * 17 15 14 34 34 H 1.09001 * 110.30913 * 96.86698 * 18 17 15 35 35 H 1.08998 * 110.31192 * 219.03905 * 18 17 15 36 36 H 1.08996 * 109.91420 * 118.13135 * 19 18 17 37 37 H 1.08995 * 109.91355 * 239.42130 * 19 18 17 38 38 H 1.09001 * 109.47089 * 187.84247 * 21 20 19 39 39 H 1.08997 * 109.46900 * 307.84342 * 21 20 19 40 40 H 1.08997 * 109.47288 * 60.00219 * 22 21 20 41 41 H 1.09002 * 109.46864 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.47085 * 299.99889 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4426 0.0106 5 6 1.5496 2.1487 -1.2378 6 1 0.9277 3.0270 -1.1478 7 6 1.8950 1.6733 -2.4851 8 7 2.6518 0.6033 -2.5947 9 14 1.2867 2.5481 -4.0193 10 1 0.4569 3.7156 -3.6273 11 1 2.4492 3.0124 -4.8183 12 1 0.4698 1.6115 -4.8322 13 7 1.5385 2.1392 1.1922 14 6 2.3556 1.8206 2.3707 15 6 1.6710 2.3616 3.6273 16 1 0.7056 1.8788 3.7791 17 6 2.5782 2.1724 4.8689 18 6 2.0737 3.2637 5.8408 19 6 1.3776 4.3072 4.9473 20 7 1.5127 3.8413 3.5501 21 6 0.3297 4.2029 2.7579 22 6 0.2736 5.7227 2.5898 23 1 -0.3634 0.5910 0.8408 24 1 -0.3634 0.4326 -0.9321 25 1 -0.3634 -1.0236 0.0915 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 2.8950 0.2691 -3.4722 29 1 1.4986 3.1356 1.0387 30 1 3.3386 2.2795 2.2662 31 1 2.4665 0.7394 2.4543 32 1 3.6242 2.3389 4.6113 33 1 2.4416 1.1801 5.2988 34 1 1.3635 2.8393 6.5505 35 1 2.9124 3.7171 6.3689 36 1 0.3233 4.3802 5.2141 37 1 1.8609 5.2771 5.0637 38 1 0.3910 3.7310 1.7772 39 1 -0.5693 3.8605 3.2703 40 1 1.1725 6.0650 2.0774 41 1 -0.6045 5.9910 2.0024 42 1 0.2123 6.1946 3.5705 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036679887.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:05 Heat of formation + Delta-G solvation = -15.993241 kcal Electronic energy + Delta-G solvation = -18454.573790 eV Core-core repulsion = 15854.492107 eV Total energy + Delta-G solvation = -2600.081683 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.27470 -37.81054 -34.54964 -34.31831 -32.71203 -30.35357 -29.50393 -27.98571 -25.40465 -25.07347 -23.22404 -21.40343 -21.09975 -20.72159 -18.51331 -17.40484 -16.81448 -16.43292 -15.85513 -15.26908 -15.10431 -15.01880 -14.86799 -14.09394 -13.84735 -13.76255 -13.51701 -13.30594 -12.94131 -12.83887 -12.76793 -12.41386 -12.36668 -12.19984 -12.08334 -11.94156 -11.75338 -11.50746 -11.43233 -11.37411 -11.05647 -10.67851 -10.52536 -9.28947 -8.93748 -8.08075 -6.19801 1.40931 1.43346 1.54219 2.43634 3.09594 3.20844 3.53037 3.83552 3.98560 4.13162 4.31784 4.36135 4.46503 4.50876 4.61018 4.70394 4.75606 4.77847 4.82541 4.83062 4.93957 4.96721 5.02127 5.05398 5.11633 5.20510 5.30880 5.32667 5.39772 5.40583 5.47267 5.58037 5.73120 5.83281 5.91122 6.10553 6.25278 6.32337 6.54524 6.84920 7.05345 7.49076 8.97470 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028463 B = 0.006529 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.505107 B = 4287.289647 C = 4841.451672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.099 4.099 3 C 0.220 3.780 4 H -0.043 1.043 5 C -0.518 4.518 6 H 0.055 0.945 7 C 0.015 3.985 8 N -0.918 5.918 9 Si 0.954 3.046 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.281 1.281 13 N -0.677 5.677 14 C 0.079 3.921 15 C 0.076 3.924 16 H 0.050 0.950 17 C -0.117 4.117 18 C -0.122 4.122 19 C 0.035 3.965 20 N -0.526 5.526 21 C 0.029 3.971 22 C -0.139 4.139 23 H 0.054 0.946 24 H 0.030 0.970 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.020 0.980 28 H 0.260 0.740 29 H 0.335 0.665 30 H 0.011 0.989 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.030 0.970 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 5.498 14.680 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.138 4.138 3 C 0.111 3.889 4 H -0.026 1.026 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.780 3.220 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.207 1.207 13 N -0.312 5.312 14 C -0.052 4.052 15 C -0.032 4.032 16 H 0.068 0.932 17 C -0.156 4.156 18 C -0.160 4.160 19 C -0.093 4.093 20 N -0.251 5.251 21 C -0.100 4.100 22 C -0.197 4.197 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.157 0.843 30 H 0.029 0.971 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.278 5.177 14.414 15.662 hybrid contribution 0.090 0.289 -1.050 1.092 sum -3.188 5.466 13.364 14.786 Atomic orbital electron populations 1.21284 0.95902 0.98400 1.00674 1.21316 0.96306 0.97684 0.98445 1.18910 0.90296 0.92258 0.87387 1.02598 1.21428 1.31078 1.11804 0.91302 0.92637 1.25627 0.95285 0.95675 1.01759 1.70031 1.37731 1.23957 1.24084 0.85570 0.78026 0.78764 0.79663 1.19052 1.20953 1.20739 1.60950 1.53057 1.13276 1.03874 1.21789 0.93809 0.98937 0.90635 1.22783 0.97860 0.88212 0.94379 0.93162 1.22491 0.99249 0.99740 0.94108 1.22373 1.00804 0.95511 0.97342 1.22897 0.99363 0.99441 0.87560 1.64809 1.38322 1.10480 1.11528 1.22580 0.90487 0.97335 0.99559 1.21707 1.01769 0.94375 1.01833 0.92702 0.95041 0.94735 0.92478 0.96179 0.93099 0.84281 0.97054 0.92154 0.91417 0.89933 0.90368 0.89902 0.93643 0.90254 0.89628 0.95179 0.93059 0.91776 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.68 9.49 71.98 0.68 -3.99 16 2 C -0.10 -4.88 5.53 30.60 0.17 -4.71 16 3 C 0.22 11.27 2.28 44.17 0.10 11.37 16 4 H -0.04 -2.54 7.92 -2.39 -0.02 -2.56 16 5 C -0.52 -28.33 7.46 25.60 0.19 -28.13 16 6 H 0.06 3.01 7.68 -2.91 -0.02 2.98 16 7 C 0.02 0.85 5.30 84.65 0.45 1.30 16 8 N -0.92 -53.36 11.31 21.45 0.24 -53.12 16 9 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 N -0.68 -28.76 4.36 -495.45 -2.16 -30.92 16 14 C 0.08 2.90 5.29 86.30 0.46 3.36 16 15 C 0.08 2.25 2.76 45.17 0.12 2.37 16 16 H 0.05 1.55 8.02 -2.39 -0.02 1.53 16 17 C -0.12 -2.71 6.48 31.80 0.21 -2.50 16 18 C -0.12 -2.30 6.93 31.48 0.22 -2.08 16 19 C 0.04 0.77 5.69 86.45 0.49 1.26 16 20 N -0.53 -14.95 4.93 -857.04 -4.22 -19.18 16 21 C 0.03 0.84 5.10 86.30 0.44 1.28 16 22 C -0.14 -3.44 9.94 71.98 0.72 -2.72 16 23 H 0.05 2.32 7.43 -2.38 -0.02 2.30 16 24 H 0.03 1.49 7.42 -2.39 -0.02 1.47 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 3.17 6.05 -2.39 -0.01 3.16 16 27 H 0.02 0.91 7.10 -2.38 -0.02 0.89 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.34 14.38 5.47 -89.70 -0.49 13.89 16 30 H 0.01 0.44 8.11 -2.39 -0.02 0.43 16 31 H 0.06 2.27 6.98 -2.38 -0.02 2.25 16 32 H 0.07 1.65 8.03 -2.39 -0.02 1.63 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 0.95 7.60 -2.39 -0.02 0.93 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 2.97 4.37 -2.39 -0.01 2.96 16 39 H 0.03 0.84 7.88 -2.39 -0.02 0.82 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.29 7.45 -2.39 -0.02 1.27 16 Total: -1.00 -58.96 316.53 0.60 -58.35 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.48 Total: 22.14 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 4.25 Total: -23.21 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -6.14 Total: -103.22 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -58.96 0.60 -58.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036679887.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.360 kcal (2) G-P(sol) polarization free energy of solvation -58.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds