Wall clock time and date at job start Mon Mar 30 2020 03:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47261 * 2 1 4 4 H 1.09006 * 109.47189 * 175.02220 * 3 2 1 5 5 C 1.50692 * 109.47429 * 55.02009 * 3 2 1 6 6 H 1.08004 * 120.00103 * 239.99965 * 5 3 2 7 7 C 1.37888 * 119.99695 * 59.99833 * 5 3 2 8 8 N 1.31510 * 120.00078 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99600 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46668 * 120.00045 * 9 7 5 12 12 H 1.48493 * 109.47115 * 240.00033 * 9 7 5 13 13 N 1.46902 * 109.47209 * 295.01664 * 3 2 1 14 14 C 1.46897 * 111.00454 * 272.27772 * 13 3 2 15 15 C 1.53000 * 109.47310 * 185.05954 * 14 13 3 16 16 H 1.08999 * 110.33421 * 64.19556 * 15 14 13 17 17 C 1.54905 * 110.37238 * 186.45047 * 15 14 13 18 18 C 1.55142 * 101.68364 * 155.98846 * 17 15 14 19 19 C 1.54358 * 103.00060 * 324.39558 * 18 17 15 20 20 N 1.47441 * 107.25077 * 22.23017 * 19 18 17 21 21 C 1.46893 * 111.00011 * 123.29205 * 20 19 18 22 22 C 1.53001 * 109.47360 * 54.14237 * 21 20 19 23 23 H 1.09001 * 109.47440 * 180.49737 * 1 2 3 24 24 H 1.08996 * 109.47180 * 300.50288 * 1 2 3 25 25 H 1.09000 * 109.46796 * 60.50418 * 1 2 3 26 26 H 1.09001 * 109.46917 * 239.99722 * 2 1 3 27 27 H 1.09004 * 109.46921 * 120.00313 * 2 1 3 28 28 H 0.96996 * 119.99826 * 180.02562 * 8 7 5 29 29 H 1.00907 * 110.99728 * 36.22713 * 13 3 2 30 30 H 1.09000 * 109.47434 * 65.05111 * 14 13 3 31 31 H 1.09003 * 109.46844 * 305.05607 * 14 13 3 32 32 H 1.08997 * 110.99433 * 274.10028 * 17 15 14 33 33 H 1.08997 * 110.99120 * 37.88305 * 17 15 14 34 34 H 1.08998 * 110.70379 * 82.75201 * 18 17 15 35 35 H 1.09005 * 110.70760 * 205.98123 * 18 17 15 36 36 H 1.09004 * 109.85110 * 262.83087 * 19 18 17 37 37 H 1.09002 * 109.90708 * 141.65867 * 19 18 17 38 38 H 1.08997 * 109.46985 * 174.13814 * 21 20 19 39 39 H 1.09000 * 109.47372 * 294.14149 * 21 20 19 40 40 H 1.09001 * 109.47462 * 56.39403 * 22 21 20 41 41 H 1.08998 * 109.47493 * 176.40566 * 22 21 20 42 42 H 1.09006 * 109.46892 * 296.39718 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1264 1.4437 0.0892 5 6 1.4396 2.1876 1.1641 6 1 0.8300 3.0618 0.9891 7 6 1.6686 1.7533 2.4526 8 7 2.4113 0.6891 2.6656 9 14 0.9237 2.6766 3.8955 10 1 0.1350 3.8296 3.3916 11 1 0.0344 1.7656 4.6601 12 1 2.0088 3.1682 4.7820 13 7 1.6511 2.0993 -1.2551 14 6 2.6580 1.8750 -2.3008 15 6 2.2831 2.6751 -3.5499 16 1 2.3133 3.7439 -3.3383 17 6 3.2391 2.3295 -4.7188 18 6 2.3718 2.6944 -5.9523 19 6 0.9484 2.2983 -5.5055 20 7 0.9412 2.2835 -4.0312 21 6 -0.0917 3.1833 -3.5008 22 6 -1.4455 2.8253 -4.1172 23 1 -0.3634 -1.0276 0.0089 24 1 -0.3633 0.5216 0.8854 25 1 -0.3633 0.5060 -0.8945 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.5720 0.3834 3.5720 29 1 0.7399 1.7894 -1.5581 30 1 2.6961 0.8138 -2.5469 31 1 3.6343 2.1997 -1.9408 32 1 4.1402 2.9415 -4.6802 33 1 3.4896 1.2687 -4.7177 34 1 2.4270 3.7631 -6.1596 35 1 2.6781 2.1155 -6.8236 36 1 0.7029 1.3073 -5.8875 37 1 0.2274 3.0287 -5.8726 38 1 -0.1459 3.0757 -2.4175 39 1 0.1605 4.2137 -3.7515 40 1 -1.6682 1.7765 -3.9210 41 1 -2.2221 3.4503 -3.6764 42 1 -1.4107 2.9941 -5.1935 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036679889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:08 Heat of formation + Delta-G solvation = -3.229500 kcal Electronic energy + Delta-G solvation = -18468.990068 eV Core-core repulsion = 15869.461863 eV Total energy + Delta-G solvation = -2599.528205 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.20410 -36.15590 -33.29931 -32.58962 -30.88116 -28.80194 -28.32071 -26.13875 -24.07389 -23.22481 -22.07228 -20.45164 -19.60109 -19.10539 -16.58620 -16.03072 -15.34175 -14.66765 -14.54356 -14.22684 -13.55743 -13.34306 -13.05310 -12.76741 -12.66198 -12.25227 -12.14606 -11.75310 -11.57929 -11.41777 -11.09651 -11.00043 -10.86524 -10.86010 -10.52426 -10.45725 -10.42881 -10.35776 -9.86258 -9.60007 -9.40413 -8.87354 -8.26870 -8.03639 -7.03326 -5.90004 -3.90984 3.35286 3.43338 3.48267 4.17781 4.49936 4.72895 4.79927 5.03079 5.34255 5.35230 5.41525 5.45862 5.52910 5.66920 5.69013 5.78328 5.88900 5.96569 5.98239 6.06649 6.10533 6.29029 6.32788 6.34856 6.45263 6.48802 6.59604 6.60914 6.69454 7.04360 7.28068 7.38065 7.40486 7.44089 7.61567 7.81823 7.98696 8.40942 8.73153 8.77486 9.15434 9.72549 11.17000 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030864 B = 0.006154 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.993510 B = 4548.933709 C = 4800.734695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.143 4.143 3 C 0.214 3.786 4 H 0.029 0.971 5 C -0.484 4.484 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.686 5.686 14 C 0.077 3.923 15 C 0.077 3.923 16 H 0.058 0.942 17 C -0.125 4.125 18 C -0.142 4.142 19 C 0.039 3.961 20 N -0.523 5.523 21 C 0.043 3.957 22 C -0.152 4.152 23 H 0.021 0.979 24 H 0.064 0.936 25 H 0.031 0.969 26 H 0.010 0.990 27 H 0.090 0.910 28 H 0.257 0.743 29 H 0.333 0.667 30 H 0.022 0.978 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.027 0.973 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 2.619 -14.761 15.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.182 4.182 3 C 0.106 3.894 4 H 0.047 0.953 5 C -0.523 4.523 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.319 5.319 14 C -0.053 4.053 15 C -0.031 4.031 16 H 0.076 0.924 17 C -0.164 4.164 18 C -0.180 4.180 19 C -0.089 4.089 20 N -0.248 5.248 21 C -0.085 4.085 22 C -0.210 4.210 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.029 0.971 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.154 0.846 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.089 2.640 -14.233 14.626 hybrid contribution -0.328 0.260 0.348 0.545 sum -2.417 2.900 -13.885 14.389 Atomic orbital electron populations 1.21557 0.97774 0.98059 1.01029 1.22062 0.94959 1.01157 1.00046 1.19192 0.95655 0.88621 0.85929 0.95345 1.21135 1.30139 1.11266 0.89721 0.92149 1.24919 0.95661 0.95199 0.98697 1.69898 1.39233 1.24088 1.20497 0.86555 0.78926 0.79879 0.82723 1.19829 1.21307 1.21294 1.60906 1.04390 1.62862 1.03714 1.21798 0.96423 0.96417 0.90695 1.22689 0.87326 0.98529 0.94565 0.92396 1.22735 0.97732 1.02035 0.93904 1.22776 0.95994 1.00884 0.98387 1.22860 0.96013 1.00970 0.89034 1.63533 1.04418 1.50801 1.06052 1.22394 0.90966 0.93252 1.01922 1.21913 0.96665 1.02405 0.99991 0.96028 0.91696 0.95046 0.97099 0.89179 0.93303 0.84602 0.96031 0.91886 0.91089 0.90733 0.91901 0.91211 0.91099 0.92756 0.88469 0.95494 0.91869 0.92417 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.41 37.16 0.35 -2.46 16 2 C -0.14 -3.46 5.52 -26.73 -0.15 -3.60 16 3 C 0.21 5.39 2.34 -68.87 -0.16 5.22 16 4 H 0.03 0.80 7.68 -51.93 -0.40 0.40 16 5 C -0.48 -13.24 7.34 -34.44 -0.25 -13.50 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.53 5.27 -17.82 -0.09 1.44 16 8 N -0.90 -25.69 11.38 55.43 0.63 -25.06 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.69 -14.73 5.55 -107.96 -0.60 -15.33 16 14 C 0.08 1.44 5.30 -3.83 -0.02 1.42 16 15 C 0.08 1.18 2.80 -66.19 -0.19 1.00 16 16 H 0.06 0.94 7.69 -51.93 -0.40 0.54 16 17 C -0.13 -1.56 6.49 -24.59 -0.16 -1.72 16 18 C -0.14 -1.53 6.95 -24.89 -0.17 -1.71 16 19 C 0.04 0.47 6.18 -2.82 -0.02 0.45 16 20 N -0.52 -7.68 4.60 -223.36 -1.03 -8.71 16 21 C 0.04 0.62 5.18 -3.83 -0.02 0.60 16 22 C -0.15 -1.84 9.59 37.16 0.36 -1.48 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 1.56 7.03 -51.93 -0.37 1.19 16 25 H 0.03 0.64 6.44 -51.93 -0.33 0.31 16 26 H 0.01 0.24 7.64 -51.93 -0.40 -0.16 16 27 H 0.09 2.43 6.22 -51.93 -0.32 2.11 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.33 6.99 4.15 -39.29 -0.16 6.83 16 30 H 0.02 0.42 7.61 -51.93 -0.40 0.02 16 31 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.95 8.02 -51.93 -0.42 0.53 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.60 5.94 -51.93 -0.31 0.30 16 38 H 0.10 1.64 5.80 -51.93 -0.30 1.34 16 39 H 0.03 0.38 7.97 -51.93 -0.41 -0.03 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.53 6.30 -51.93 -0.33 0.20 16 LS Contribution 314.27 15.07 4.74 4.74 Total: -1.00 -27.90 314.27 -9.26 -37.16 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.46 Total: 4.99 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -0.52 Total: -14.34 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -1.00 Total: -49.10 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.90 -9.26 -37.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036679889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.933 kcal (2) G-P(sol) polarization free energy of solvation -27.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds