Wall clock time and date at job start Mon Mar 30 2020 03:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47261 * 2 1 4 4 H 1.09006 * 109.47189 * 175.02220 * 3 2 1 5 5 C 1.50692 * 109.47429 * 55.02009 * 3 2 1 6 6 H 1.08004 * 120.00103 * 239.99965 * 5 3 2 7 7 C 1.37888 * 119.99695 * 59.99833 * 5 3 2 8 8 N 1.31510 * 120.00078 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99600 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46668 * 120.00045 * 9 7 5 12 12 H 1.48493 * 109.47115 * 240.00033 * 9 7 5 13 13 N 1.46902 * 109.47209 * 295.01664 * 3 2 1 14 14 C 1.46897 * 111.00454 * 272.27772 * 13 3 2 15 15 C 1.53000 * 109.47310 * 185.05954 * 14 13 3 16 16 H 1.08999 * 110.33421 * 64.19556 * 15 14 13 17 17 C 1.54905 * 110.37238 * 186.45047 * 15 14 13 18 18 C 1.55142 * 101.68364 * 155.98846 * 17 15 14 19 19 C 1.54358 * 103.00060 * 324.39558 * 18 17 15 20 20 N 1.47441 * 107.25077 * 22.23017 * 19 18 17 21 21 C 1.46893 * 111.00011 * 123.29205 * 20 19 18 22 22 C 1.53001 * 109.47360 * 54.14237 * 21 20 19 23 23 H 1.09001 * 109.47440 * 180.49737 * 1 2 3 24 24 H 1.08996 * 109.47180 * 300.50288 * 1 2 3 25 25 H 1.09000 * 109.46796 * 60.50418 * 1 2 3 26 26 H 1.09001 * 109.46917 * 239.99722 * 2 1 3 27 27 H 1.09004 * 109.46921 * 120.00313 * 2 1 3 28 28 H 0.96996 * 119.99826 * 180.02562 * 8 7 5 29 29 H 1.00907 * 110.99728 * 36.22713 * 13 3 2 30 30 H 1.09000 * 109.47434 * 65.05111 * 14 13 3 31 31 H 1.09003 * 109.46844 * 305.05607 * 14 13 3 32 32 H 1.08997 * 110.99433 * 274.10028 * 17 15 14 33 33 H 1.08997 * 110.99120 * 37.88305 * 17 15 14 34 34 H 1.08998 * 110.70379 * 82.75201 * 18 17 15 35 35 H 1.09005 * 110.70760 * 205.98123 * 18 17 15 36 36 H 1.09004 * 109.85110 * 262.83087 * 19 18 17 37 37 H 1.09002 * 109.90708 * 141.65867 * 19 18 17 38 38 H 1.08997 * 109.46985 * 174.13814 * 21 20 19 39 39 H 1.09000 * 109.47372 * 294.14149 * 21 20 19 40 40 H 1.09001 * 109.47462 * 56.39403 * 22 21 20 41 41 H 1.08998 * 109.47493 * 176.40566 * 22 21 20 42 42 H 1.09006 * 109.46892 * 296.39718 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1264 1.4437 0.0892 5 6 1.4396 2.1876 1.1641 6 1 0.8300 3.0618 0.9891 7 6 1.6686 1.7533 2.4526 8 7 2.4113 0.6891 2.6656 9 14 0.9237 2.6766 3.8955 10 1 0.1350 3.8296 3.3916 11 1 0.0344 1.7656 4.6601 12 1 2.0088 3.1682 4.7820 13 7 1.6511 2.0993 -1.2551 14 6 2.6580 1.8750 -2.3008 15 6 2.2831 2.6751 -3.5499 16 1 2.3133 3.7439 -3.3383 17 6 3.2391 2.3295 -4.7188 18 6 2.3718 2.6944 -5.9523 19 6 0.9484 2.2983 -5.5055 20 7 0.9412 2.2835 -4.0312 21 6 -0.0917 3.1833 -3.5008 22 6 -1.4455 2.8253 -4.1172 23 1 -0.3634 -1.0276 0.0089 24 1 -0.3633 0.5216 0.8854 25 1 -0.3633 0.5060 -0.8945 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.5720 0.3834 3.5720 29 1 0.7399 1.7894 -1.5581 30 1 2.6961 0.8138 -2.5469 31 1 3.6343 2.1997 -1.9408 32 1 4.1402 2.9415 -4.6802 33 1 3.4896 1.2687 -4.7177 34 1 2.4270 3.7631 -6.1596 35 1 2.6781 2.1155 -6.8236 36 1 0.7029 1.3073 -5.8875 37 1 0.2274 3.0287 -5.8726 38 1 -0.1459 3.0757 -2.4175 39 1 0.1605 4.2137 -3.7515 40 1 -1.6682 1.7765 -3.9210 41 1 -2.2221 3.4503 -3.6764 42 1 -1.4107 2.9941 -5.1935 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036679889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:07 Heat of formation + Delta-G solvation = -20.571530 kcal Electronic energy + Delta-G solvation = -18469.742075 eV Core-core repulsion = 15869.461863 eV Total energy + Delta-G solvation = -2600.280212 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.35410 -37.98524 -34.61127 -34.20229 -32.67997 -30.21302 -29.39849 -28.03524 -25.53909 -25.03600 -23.30164 -21.52586 -21.18488 -20.64067 -18.24002 -17.50790 -16.84108 -16.50151 -16.04698 -15.31544 -15.18172 -14.83271 -14.45951 -14.23638 -14.02061 -13.87129 -13.48705 -13.39068 -12.90418 -12.78935 -12.71434 -12.44165 -12.42143 -12.15274 -11.98114 -11.91759 -11.78651 -11.62782 -11.49095 -11.46748 -11.22965 -10.89425 -10.41129 -9.18950 -8.80582 -8.02941 -6.11336 1.42146 1.44559 1.56015 2.47193 3.07475 3.25351 3.58552 3.77988 4.05763 4.12989 4.28270 4.35459 4.44451 4.46461 4.56871 4.61234 4.67164 4.72624 4.75804 4.79881 4.86834 4.91891 4.99618 5.06400 5.12176 5.16186 5.17180 5.32560 5.37256 5.39354 5.44544 5.45922 5.69701 5.75904 5.88116 6.18064 6.29147 6.37151 6.76676 6.95151 7.05430 7.56732 9.02722 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030864 B = 0.006154 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.993510 B = 4548.933709 C = 4800.734695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.135 4.135 3 C 0.219 3.781 4 H -0.008 1.008 5 C -0.495 4.495 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.923 5.923 9 Si 0.952 3.048 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.685 5.685 14 C 0.080 3.920 15 C 0.082 3.918 16 H 0.048 0.952 17 C -0.122 4.122 18 C -0.133 4.133 19 C 0.037 3.963 20 N -0.538 5.538 21 C 0.044 3.956 22 C -0.144 4.144 23 H 0.041 0.959 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.258 0.742 29 H 0.338 0.662 30 H 0.014 0.986 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.028 0.972 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.204 3.131 -16.384 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.175 4.175 3 C 0.110 3.890 4 H 0.010 0.990 5 C -0.534 4.534 6 H 0.069 0.931 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.211 1.211 13 N -0.317 5.317 14 C -0.051 4.051 15 C -0.027 4.027 16 H 0.066 0.934 17 C -0.161 4.161 18 C -0.171 4.171 19 C -0.090 4.090 20 N -0.263 5.263 21 C -0.084 4.084 22 C -0.202 4.202 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.159 0.841 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.030 3.156 -15.879 16.470 hybrid contribution -0.006 0.089 0.824 0.828 sum -3.036 3.245 -15.055 15.697 Atomic orbital electron populations 1.21421 0.95947 0.99278 1.00664 1.21912 0.96487 1.00145 0.98949 1.18966 0.93254 0.89434 0.87306 0.98984 1.21317 1.30105 1.11157 0.90837 0.93096 1.25616 0.96000 0.95925 1.01077 1.70027 1.40110 1.25204 1.20991 0.85599 0.78179 0.78806 0.79594 1.19365 1.20737 1.21055 1.60823 1.05253 1.62324 1.03348 1.21828 0.95260 0.96590 0.91403 1.22535 0.88999 0.97106 0.94072 0.93388 1.22719 0.97830 1.02105 0.93408 1.22755 0.94450 1.01815 0.98057 1.22935 0.97299 1.01720 0.87038 1.63449 1.03819 1.50980 1.08054 1.22320 0.92310 0.93439 1.00350 1.21850 0.95342 1.02017 1.00974 0.93954 0.93790 0.93585 0.96219 0.92100 0.93275 0.84104 0.96777 0.93029 0.89938 0.91041 0.90993 0.89133 0.90655 0.91484 0.91442 0.95339 0.92625 0.91525 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 9.41 71.98 0.68 -4.40 16 2 C -0.14 -6.65 5.52 30.59 0.17 -6.48 16 3 C 0.22 11.35 2.34 44.16 0.10 11.46 16 4 H -0.01 -0.45 7.68 -2.38 -0.02 -0.47 16 5 C -0.50 -27.65 7.34 25.60 0.19 -27.46 16 6 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.65 5.27 84.66 0.45 1.09 16 8 N -0.92 -53.85 11.38 21.45 0.24 -53.61 16 9 Si 0.95 44.57 29.54 68.60 2.03 46.59 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 13 N -0.68 -29.96 5.55 -495.47 -2.75 -32.71 16 14 C 0.08 3.01 5.30 86.30 0.46 3.46 16 15 C 0.08 2.44 2.80 45.38 0.13 2.57 16 16 H 0.05 1.53 7.69 -2.39 -0.02 1.52 16 17 C -0.12 -2.81 6.49 31.98 0.21 -2.60 16 18 C -0.13 -2.44 6.95 31.79 0.22 -2.22 16 19 C 0.04 0.79 6.18 86.66 0.54 1.33 16 20 N -0.54 -15.02 4.60 -860.59 -3.96 -18.98 16 21 C 0.04 1.22 5.18 86.30 0.45 1.67 16 22 C -0.14 -3.20 9.59 71.98 0.69 -2.51 16 23 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.04 2.10 7.03 -2.39 -0.02 2.08 16 25 H 0.05 1.85 6.44 -2.39 -0.02 1.84 16 26 H 0.02 0.90 7.64 -2.39 -0.02 0.88 16 27 H 0.06 3.37 6.22 -2.39 -0.01 3.35 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.34 14.26 4.15 -89.69 -0.37 13.88 16 30 H 0.01 0.55 7.61 -2.39 -0.02 0.53 16 31 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 1.70 8.02 -2.39 -0.02 1.68 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.07 1.26 5.94 -2.39 -0.01 1.25 16 38 H 0.07 2.27 5.80 -2.39 -0.01 2.26 16 39 H 0.03 0.77 7.97 -2.39 -0.02 0.75 16 40 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.24 6.30 -2.38 -0.02 1.23 16 Total: -1.00 -60.22 314.27 0.43 -59.79 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.60 Total: 23.00 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 4.27 Total: -24.09 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -6.46 Total: -105.29 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -60.22 0.43 -59.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036679889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.217 kcal (2) G-P(sol) polarization free energy of solvation -60.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds