Wall clock time and date at job start Mon Mar 30 2020 03:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46810 * 2 1 4 4 H 1.09002 * 109.47333 * 301.87684 * 3 2 1 5 5 C 1.50699 * 109.46969 * 181.87594 * 3 2 1 6 6 H 1.07999 * 120.00075 * 245.03020 * 5 3 2 7 7 C 1.37872 * 120.00349 * 65.02279 * 5 3 2 8 8 N 1.31519 * 119.99879 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00563 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46816 * 60.00144 * 9 7 5 11 11 H 1.48490 * 109.47223 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46770 * 300.00382 * 9 7 5 13 13 N 1.46902 * 109.46618 * 61.87791 * 3 2 1 14 14 C 1.46897 * 111.00159 * 38.02582 * 13 3 2 15 15 C 1.52996 * 109.47249 * 65.41438 * 14 13 3 16 16 C 1.46899 * 110.99769 * 274.06551 * 13 3 2 17 17 C 1.53117 * 109.52657 * 294.89747 * 16 13 3 18 18 C 1.53048 * 109.27623 * 182.50342 * 17 16 13 19 19 N 1.46849 * 109.57295 * 59.08375 * 18 17 16 20 20 C 1.46844 * 111.20185 * 298.29128 * 19 18 17 21 21 C 1.53038 * 109.52214 * 61.73901 * 20 19 18 22 22 H 1.09000 * 109.47223 * 45.42928 * 1 2 3 23 23 H 1.09000 * 109.47006 * 165.43191 * 1 2 3 24 24 H 1.08994 * 109.46821 * 285.42927 * 1 2 3 25 25 H 1.08999 * 109.47027 * 240.00661 * 2 1 3 26 26 H 1.08993 * 109.47241 * 120.00399 * 2 1 3 27 27 H 0.96996 * 120.00334 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.46761 * 185.41271 * 14 13 3 29 29 H 1.08993 * 109.46900 * 305.40622 * 14 13 3 30 30 H 1.09000 * 109.46996 * 173.27155 * 15 14 13 31 31 H 1.09002 * 109.46630 * 293.26355 * 15 14 13 32 32 H 1.08995 * 109.47305 * 53.26538 * 15 14 13 33 33 H 1.09005 * 109.52153 * 55.02756 * 16 13 3 34 34 H 1.08994 * 109.50451 * 302.38336 * 17 16 13 35 35 H 1.09001 * 109.50117 * 62.50304 * 17 16 13 36 36 H 1.09004 * 109.40754 * 299.07218 * 18 17 16 37 37 H 1.08995 * 109.45256 * 179.12688 * 18 17 16 38 38 H 1.00897 * 110.99744 * 62.38895 * 19 18 17 39 39 H 1.09003 * 109.46356 * 301.72945 * 20 19 18 40 40 H 1.08997 * 109.45768 * 181.75235 * 20 19 18 41 41 H 1.09005 * 109.50240 * 180.88009 * 21 20 19 42 42 H 1.09004 * 109.53524 * 60.78703 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6494 1.9661 -0.8727 5 6 3.5463 1.4429 -0.0465 6 1 4.1122 1.8285 0.7885 7 6 4.2019 0.9507 -1.1550 8 7 3.5127 0.4814 -2.1721 9 14 6.0690 0.9504 -1.2124 10 1 6.5985 0.1340 -0.0907 11 1 6.5245 0.3739 -2.5028 12 1 6.5682 2.3435 -1.0895 13 7 1.5876 2.1217 1.2215 14 6 1.6285 1.2131 2.3750 15 6 3.0798 0.8301 2.6714 16 6 0.2431 2.6858 1.0430 17 6 0.2881 3.7907 -0.0161 18 6 -1.1019 4.4166 -0.1527 19 7 -1.5218 4.9694 1.1414 20 6 -1.6183 3.9179 2.1618 21 6 -0.2435 3.2781 2.3685 22 1 -0.3634 0.7212 -0.7321 23 1 -0.3633 -0.9946 -0.2585 24 1 -0.3633 0.2734 0.9906 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.9739 0.1354 -2.9522 28 1 1.1991 1.7104 3.2447 29 1 1.0542 0.3144 2.1501 30 1 3.1221 0.2543 3.5960 31 1 3.4718 0.2291 1.8509 32 1 3.6795 1.7340 2.7785 33 1 -0.4416 1.9008 0.7217 34 1 1.0027 4.5560 0.2865 35 1 0.5923 3.3656 -0.9726 36 1 -1.8130 3.6538 -0.4698 37 1 -1.0695 5.2141 -0.8950 38 1 -0.8997 5.7060 1.4388 39 1 -2.3270 3.1574 1.8339 40 1 -1.9611 4.3532 3.1004 41 1 -0.3187 2.4872 3.1148 42 1 0.4630 4.0347 2.7102 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037469582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:19 Heat of formation + Delta-G solvation = 10.456795 kcal Electronic energy + Delta-G solvation = -19236.828903 eV Core-core repulsion = 16637.894180 eV Total energy + Delta-G solvation = -2598.934723 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.38101 -36.86302 -32.84160 -31.20623 -31.11813 -30.39139 -28.16177 -26.63396 -23.31673 -23.04742 -22.04225 -20.99886 -19.69303 -18.67599 -16.58671 -15.75634 -15.62173 -14.56559 -14.39593 -14.28347 -13.83503 -13.26855 -13.03736 -12.65475 -12.36651 -12.28141 -11.94209 -11.54427 -11.40862 -11.23440 -11.09909 -10.89734 -10.84440 -10.78027 -10.63889 -10.33218 -10.16632 -10.00936 -9.90156 -9.60207 -9.24217 -8.78431 -8.28158 -8.16368 -6.96980 -5.97121 -3.96561 3.33741 3.38462 3.41441 4.42084 4.50980 4.88159 5.17853 5.26979 5.34072 5.43281 5.68031 5.71633 5.76163 5.87470 6.02666 6.05684 6.06545 6.10717 6.18066 6.22371 6.31387 6.33946 6.40670 6.44465 6.58029 6.67731 6.74423 6.85668 6.92380 7.00569 7.19440 7.28957 7.30052 7.51487 7.56405 7.71488 7.92417 8.28031 8.44546 8.67254 9.08781 9.65642 11.10727 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027857 B = 0.007862 C = 0.007486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.876324 B = 3560.459708 C = 3739.374254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.150 4.150 3 C 0.215 3.785 4 H 0.043 0.957 5 C -0.490 4.490 6 H 0.067 0.933 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.525 5.525 14 C 0.050 3.950 15 C -0.146 4.146 16 C 0.070 3.930 17 C -0.146 4.146 18 C 0.057 3.943 19 N -0.688 5.688 20 C 0.059 3.941 21 C -0.153 4.153 22 H 0.045 0.955 23 H 0.032 0.968 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.046 0.954 27 H 0.259 0.741 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.028 0.972 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.338 0.662 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.636 3.658 6.511 10.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.190 4.190 3 C 0.109 3.891 4 H 0.060 0.940 5 C -0.529 4.529 6 H 0.085 0.915 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.249 5.249 14 C -0.078 4.078 15 C -0.203 4.203 16 C -0.039 4.039 17 C -0.185 4.185 18 C -0.073 4.073 19 N -0.317 5.317 20 C -0.071 4.071 21 C -0.192 4.192 22 H 0.064 0.936 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.155 0.845 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.961 3.950 6.258 10.869 hybrid contribution 1.517 -0.999 -0.136 1.822 sum -6.444 2.951 6.122 9.366 Atomic orbital electron populations 1.22150 0.99739 0.99519 0.99536 1.22245 0.91443 1.02695 1.02572 1.19377 0.95054 0.88094 0.86594 0.93974 1.21260 0.90794 1.38836 1.01972 0.91509 1.24944 0.97949 0.95959 0.95691 1.69905 1.35007 1.42322 1.06397 0.86678 0.86195 0.78236 0.76984 1.20430 1.21566 1.20415 1.62459 1.20772 1.35771 1.05908 1.22072 0.97391 0.94867 0.93430 1.22000 0.96664 1.01410 1.00246 1.21877 0.92120 0.96052 0.93828 1.22289 0.97086 0.98766 1.00367 1.22031 0.95187 0.98844 0.91195 1.60729 1.55101 1.12285 1.03544 1.21997 0.96194 0.94002 0.94954 1.22435 0.97478 1.00888 0.98423 0.93576 0.94870 0.94026 0.89565 0.93537 0.93132 0.93190 0.94925 0.95322 0.89658 0.92791 0.93071 0.91670 0.90703 0.91464 0.91068 0.84500 0.91455 0.91300 0.91827 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 7.98 37.16 0.30 -2.66 16 2 C -0.15 -3.42 4.63 -26.73 -0.12 -3.54 16 3 C 0.21 5.10 1.62 -68.86 -0.11 4.99 16 4 H 0.04 1.11 5.79 -51.93 -0.30 0.81 16 5 C -0.49 -12.87 6.48 -34.44 -0.22 -13.09 16 6 H 0.07 1.77 5.97 -52.49 -0.31 1.46 16 7 C 0.06 1.48 5.32 -17.82 -0.09 1.39 16 8 N -0.90 -25.09 11.69 55.43 0.65 -24.45 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.52 -10.71 4.30 -219.95 -0.94 -11.65 16 14 C 0.05 0.95 4.59 -3.83 -0.02 0.93 16 15 C -0.15 -2.83 8.25 37.16 0.31 -2.52 16 16 C 0.07 1.22 1.66 -67.59 -0.11 1.11 16 17 C -0.15 -2.48 5.28 -26.65 -0.14 -2.62 16 18 C 0.06 0.81 6.55 -3.83 -0.03 0.78 16 19 N -0.69 -8.97 6.87 -113.81 -0.78 -9.75 16 20 C 0.06 0.75 6.55 -3.84 -0.03 0.72 16 21 C -0.15 -2.24 4.76 -26.65 -0.13 -2.36 16 22 H 0.05 0.90 7.40 -51.93 -0.38 0.52 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.75 5.04 -51.93 -0.26 0.49 16 25 H 0.09 2.24 6.44 -51.93 -0.33 1.90 16 26 H 0.05 1.05 5.05 -51.93 -0.26 0.79 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.05 0.85 5.70 -51.93 -0.30 0.56 16 29 H 0.03 0.63 4.40 -51.93 -0.23 0.40 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.88 5.03 -51.93 -0.26 1.62 16 32 H 0.05 1.08 7.53 -51.93 -0.39 0.69 16 33 H 0.05 0.93 3.97 -51.93 -0.21 0.73 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.46 6.29 -51.93 -0.33 1.13 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.34 4.12 8.86 -39.29 -0.35 3.77 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.91 6.28 -51.93 -0.33 0.59 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 294.56 15.07 4.44 4.44 Total: -1.00 -26.71 294.56 -8.81 -35.52 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.76 Total: 6.57 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -0.40 Total: -16.87 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -1.08 Total: -45.85 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.71 -8.81 -35.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037469582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.981 kcal (2) G-P(sol) polarization free energy of solvation -26.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds