Wall clock time and date at job start Mon Mar 30 2020 03:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46810 * 2 1 4 4 H 1.09002 * 109.47333 * 301.87684 * 3 2 1 5 5 C 1.50699 * 109.46969 * 181.87594 * 3 2 1 6 6 H 1.07999 * 120.00075 * 245.03020 * 5 3 2 7 7 C 1.37872 * 120.00349 * 65.02279 * 5 3 2 8 8 N 1.31519 * 119.99879 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00563 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46816 * 60.00144 * 9 7 5 11 11 H 1.48490 * 109.47223 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46770 * 300.00382 * 9 7 5 13 13 N 1.46902 * 109.46618 * 61.87791 * 3 2 1 14 14 C 1.46897 * 111.00159 * 38.02582 * 13 3 2 15 15 C 1.52996 * 109.47249 * 65.41438 * 14 13 3 16 16 C 1.46899 * 110.99769 * 274.06551 * 13 3 2 17 17 C 1.53117 * 109.52657 * 294.89747 * 16 13 3 18 18 C 1.53048 * 109.27623 * 182.50342 * 17 16 13 19 19 N 1.46849 * 109.57295 * 59.08375 * 18 17 16 20 20 C 1.46844 * 111.20185 * 298.29128 * 19 18 17 21 21 C 1.53038 * 109.52214 * 61.73901 * 20 19 18 22 22 H 1.09000 * 109.47223 * 45.42928 * 1 2 3 23 23 H 1.09000 * 109.47006 * 165.43191 * 1 2 3 24 24 H 1.08994 * 109.46821 * 285.42927 * 1 2 3 25 25 H 1.08999 * 109.47027 * 240.00661 * 2 1 3 26 26 H 1.08993 * 109.47241 * 120.00399 * 2 1 3 27 27 H 0.96996 * 120.00334 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.46761 * 185.41271 * 14 13 3 29 29 H 1.08993 * 109.46900 * 305.40622 * 14 13 3 30 30 H 1.09000 * 109.46996 * 173.27155 * 15 14 13 31 31 H 1.09002 * 109.46630 * 293.26355 * 15 14 13 32 32 H 1.08995 * 109.47305 * 53.26538 * 15 14 13 33 33 H 1.09005 * 109.52153 * 55.02756 * 16 13 3 34 34 H 1.08994 * 109.50451 * 302.38336 * 17 16 13 35 35 H 1.09001 * 109.50117 * 62.50304 * 17 16 13 36 36 H 1.09004 * 109.40754 * 299.07218 * 18 17 16 37 37 H 1.08995 * 109.45256 * 179.12688 * 18 17 16 38 38 H 1.00897 * 110.99744 * 62.38895 * 19 18 17 39 39 H 1.09003 * 109.46356 * 301.72945 * 20 19 18 40 40 H 1.08997 * 109.45768 * 181.75235 * 20 19 18 41 41 H 1.09005 * 109.50240 * 180.88009 * 21 20 19 42 42 H 1.09004 * 109.53524 * 60.78703 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6494 1.9661 -0.8727 5 6 3.5463 1.4429 -0.0465 6 1 4.1122 1.8285 0.7885 7 6 4.2019 0.9507 -1.1550 8 7 3.5127 0.4814 -2.1721 9 14 6.0690 0.9504 -1.2124 10 1 6.5985 0.1340 -0.0907 11 1 6.5245 0.3739 -2.5028 12 1 6.5682 2.3435 -1.0895 13 7 1.5876 2.1217 1.2215 14 6 1.6285 1.2131 2.3750 15 6 3.0798 0.8301 2.6714 16 6 0.2431 2.6858 1.0430 17 6 0.2881 3.7907 -0.0161 18 6 -1.1019 4.4166 -0.1527 19 7 -1.5218 4.9694 1.1414 20 6 -1.6183 3.9179 2.1618 21 6 -0.2435 3.2781 2.3685 22 1 -0.3634 0.7212 -0.7321 23 1 -0.3633 -0.9946 -0.2585 24 1 -0.3633 0.2734 0.9906 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.9739 0.1354 -2.9522 28 1 1.1991 1.7104 3.2447 29 1 1.0542 0.3144 2.1501 30 1 3.1221 0.2543 3.5960 31 1 3.4718 0.2291 1.8509 32 1 3.6795 1.7340 2.7785 33 1 -0.4416 1.9008 0.7217 34 1 1.0027 4.5560 0.2865 35 1 0.5923 3.3656 -0.9726 36 1 -1.8130 3.6538 -0.4698 37 1 -1.0695 5.2141 -0.8950 38 1 -0.8997 5.7060 1.4388 39 1 -2.3270 3.1574 1.8339 40 1 -1.9611 4.3532 3.1004 41 1 -0.3187 2.4872 3.1148 42 1 0.4630 4.0347 2.7102 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037469582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:19 Heat of formation + Delta-G solvation = -7.533813 kcal Electronic energy + Delta-G solvation = -19237.609035 eV Core-core repulsion = 16637.894180 eV Total energy + Delta-G solvation = -2599.714854 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.83520 -38.26540 -34.73042 -32.89590 -32.52465 -31.66532 -29.80492 -28.36307 -25.07776 -24.40101 -23.35267 -22.48749 -21.12003 -20.33620 -18.47141 -17.40015 -16.93004 -16.38557 -15.92664 -15.51726 -15.17299 -14.77327 -14.73615 -13.99625 -13.96249 -13.72805 -13.37876 -13.12346 -12.96681 -12.91796 -12.76207 -12.62976 -12.37848 -12.32074 -12.07850 -11.96100 -11.84736 -11.60576 -11.46142 -11.25131 -10.83883 -10.70863 -10.28984 -9.29685 -8.61102 -8.03534 -6.08280 1.41660 1.42358 1.49300 2.45546 3.23632 3.31320 3.54390 3.94889 4.01050 4.26453 4.35263 4.39318 4.45477 4.48219 4.53115 4.57369 4.63418 4.69046 4.79955 4.82940 4.96086 4.99498 5.03585 5.06384 5.14263 5.18672 5.22048 5.28730 5.35942 5.40851 5.52810 5.63072 5.72515 5.86400 5.89351 6.10241 6.37718 6.52057 6.70195 6.89973 7.04016 7.57300 9.02451 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027857 B = 0.007862 C = 0.007486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.876324 B = 3560.459708 C = 3739.374254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.142 4.142 3 C 0.224 3.776 4 H 0.010 0.990 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.007 3.993 8 N -0.924 5.924 9 Si 0.945 3.055 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.536 5.536 14 C 0.051 3.949 15 C -0.140 4.140 16 C 0.067 3.933 17 C -0.139 4.139 18 C 0.068 3.932 19 N -0.684 5.684 20 C 0.063 3.937 21 C -0.143 4.143 22 H 0.038 0.962 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.256 0.744 28 H 0.077 0.923 29 H 0.032 0.968 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.345 0.655 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.757 4.201 8.399 12.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.181 4.181 3 C 0.117 3.883 4 H 0.028 0.972 5 C -0.533 4.533 6 H 0.078 0.922 7 C -0.190 4.190 8 N -0.565 5.565 9 Si 0.772 3.228 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.260 5.260 14 C -0.077 4.077 15 C -0.198 4.198 16 C -0.041 4.041 17 C -0.179 4.179 18 C -0.062 4.062 19 N -0.312 5.312 20 C -0.067 4.067 21 C -0.182 4.182 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.163 0.837 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.086 4.506 8.168 13.022 hybrid contribution 1.861 -1.144 -0.685 2.289 sum -7.225 3.363 7.483 10.932 Atomic orbital electron populations 1.21999 0.96966 1.00272 1.00428 1.22049 0.93869 1.01518 1.00701 1.19059 0.93684 0.88500 0.87082 0.97239 1.21557 0.92442 1.37847 1.01472 0.92162 1.25610 1.01638 0.96116 0.95650 1.70038 1.36219 1.43441 1.06801 0.85808 0.81902 0.78126 0.76950 1.19789 1.21527 1.20285 1.62377 1.22959 1.35700 1.04952 1.22137 0.97116 0.94838 0.93608 1.21894 0.96763 1.00695 1.00416 1.21978 0.90422 0.95930 0.95793 1.22230 0.98820 0.98332 0.98538 1.21930 0.92966 0.99017 0.92333 1.60745 1.54893 1.12441 1.03140 1.22040 0.94824 0.93933 0.95889 1.22368 0.98445 1.00930 0.96477 0.94276 0.93433 0.92174 0.93193 0.93511 0.93485 0.90501 0.94976 0.92372 0.92875 0.93870 0.93466 0.92885 0.94109 0.91438 0.89978 0.83732 0.91279 0.88802 0.90906 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.31 7.98 71.98 0.57 -4.73 16 2 C -0.14 -6.56 4.63 30.60 0.14 -6.41 16 3 C 0.22 10.88 1.62 44.17 0.07 10.95 16 4 H 0.01 0.54 5.79 -2.39 -0.01 0.53 16 5 C -0.49 -26.61 6.48 25.60 0.17 -26.44 16 6 H 0.06 3.26 5.97 -2.91 -0.02 3.24 16 7 C 0.01 0.40 5.32 84.65 0.45 0.85 16 8 N -0.92 -53.47 11.69 21.45 0.25 -53.22 16 9 Si 0.95 44.32 29.54 68.60 2.03 46.34 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 N -0.54 -21.66 4.30 -849.80 -3.65 -25.31 16 14 C 0.05 1.81 4.59 86.30 0.40 2.21 16 15 C -0.14 -5.27 8.25 71.98 0.59 -4.68 16 16 C 0.07 2.26 1.66 44.99 0.07 2.34 16 17 C -0.14 -4.75 5.28 30.65 0.16 -4.59 16 18 C 0.07 1.81 6.55 86.33 0.57 2.38 16 19 N -0.68 -15.93 6.87 -513.99 -3.53 -19.46 16 20 C 0.06 1.39 6.55 86.33 0.57 1.95 16 21 C -0.14 -3.77 4.76 30.65 0.15 -3.62 16 22 H 0.04 1.52 7.40 -2.39 -0.02 1.50 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.06 2.05 5.04 -2.39 -0.01 2.04 16 25 H 0.05 2.67 6.44 -2.39 -0.02 2.66 16 26 H 0.05 2.12 5.05 -2.39 -0.01 2.11 16 27 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.08 2.37 5.70 -2.39 -0.01 2.35 16 29 H 0.03 1.17 4.40 -2.39 -0.01 1.16 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 31 H 0.05 2.34 5.03 -2.39 -0.01 2.33 16 32 H 0.04 1.68 7.53 -2.39 -0.02 1.66 16 33 H 0.05 1.66 3.97 -2.38 -0.01 1.65 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.04 1.65 6.29 -2.39 -0.02 1.64 16 36 H 0.07 1.81 8.14 -2.38 -0.02 1.80 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.34 7.45 8.86 -89.70 -0.79 6.66 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.07 1.81 6.28 -2.38 -0.01 1.79 16 42 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -58.49 294.56 -0.78 -59.27 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.22 Total: 22.18 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 3.91 Total: -29.81 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -6.93 Total: -97.99 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -58.49 -0.78 -59.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037469582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.735 kcal (2) G-P(sol) polarization free energy of solvation -58.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds