Wall clock time and date at job start Mon Mar 30 2020 03:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47067 * 2 1 4 4 N 1.46897 * 109.47036 * 179.69016 * 3 2 1 5 5 C 1.46903 * 110.99838 * 296.99144 * 4 3 2 6 6 C 1.53003 * 109.47141 * 296.86163 * 5 4 3 7 7 C 1.50696 * 109.47187 * 185.46808 * 6 5 4 8 8 H 1.08000 * 120.00305 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00024 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99970 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00101 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47039 * 59.99634 * 11 9 7 13 13 H 1.48501 * 109.47022 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46750 * 299.99578 * 11 9 7 15 15 C 1.46897 * 110.99974 * 60.94223 * 4 3 2 16 16 C 1.53128 * 109.52249 * 179.97438 * 15 4 3 17 17 C 1.53040 * 109.27714 * 182.44038 * 16 15 4 18 18 N 1.46849 * 109.51981 * 59.18448 * 17 16 15 19 19 C 1.46845 * 111.19665 * 298.25279 * 18 17 16 20 20 C 1.53036 * 109.52213 * 61.74486 * 19 18 17 21 21 H 1.09002 * 109.46845 * 299.99529 * 1 2 3 22 22 H 1.08998 * 109.47012 * 60.00013 * 1 2 3 23 23 H 1.09001 * 109.46910 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47208 * 239.99797 * 2 1 3 25 25 H 1.09006 * 109.47249 * 119.99718 * 2 1 3 26 26 H 1.09002 * 109.46683 * 59.69341 * 3 2 1 27 27 H 1.09000 * 109.46849 * 299.68845 * 3 2 1 28 28 H 1.08991 * 109.47566 * 56.87068 * 5 4 3 29 29 H 1.09006 * 109.47047 * 176.87010 * 5 4 3 30 30 H 1.09002 * 109.47598 * 305.47300 * 6 5 4 31 31 H 1.09005 * 109.46240 * 65.46884 * 6 5 4 32 32 H 0.96993 * 119.99964 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.57667 * 300.15525 * 15 4 3 34 34 H 1.09000 * 109.49993 * 62.50185 * 16 15 4 35 35 H 1.08994 * 109.50414 * 302.38667 * 16 15 4 36 36 H 1.08992 * 109.46416 * 299.16587 * 17 16 15 37 37 H 1.09005 * 109.45637 * 179.19712 * 17 16 15 38 38 H 1.00898 * 111.00151 * 62.35134 * 18 17 16 39 39 H 1.09001 * 109.45852 * 181.75962 * 19 18 17 40 40 H 1.09002 * 109.45974 * 301.72934 * 19 18 17 41 41 H 1.09000 * 109.49947 * 180.87572 * 20 19 18 42 42 H 1.09000 * 109.50349 * 60.76311 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0075 5 6 4.0291 0.8223 1.2334 6 6 3.5972 1.6491 2.4462 7 6 4.2405 1.0911 3.6894 8 1 4.8920 0.2324 3.6215 9 6 3.9967 1.6762 4.9139 10 7 3.2030 2.7216 4.9967 11 14 4.7947 0.9850 6.4549 12 1 6.2720 1.0446 6.3166 13 1 4.3753 1.7874 7.6320 14 1 4.3714 -0.4262 6.6410 15 6 4.0415 0.7743 -1.1874 16 6 5.5721 0.7941 -1.1454 17 6 6.1208 0.1511 -2.4212 18 7 5.6358 0.8927 -3.5922 19 6 4.1707 0.8476 -3.6797 20 6 3.5637 1.5113 -2.4416 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6721 1.9579 0.8873 27 1 1.6812 1.9547 -0.8928 28 1 3.6346 -0.1896 1.3242 29 1 5.1176 0.7851 1.1881 30 1 3.9085 2.6847 2.3095 31 1 2.5127 1.6060 2.5475 32 1 3.0317 3.1334 5.8580 33 1 3.6909 -0.2574 -1.2157 34 1 5.9195 0.2341 -0.2772 35 1 5.9210 1.8245 -1.0780 36 1 5.7829 -0.8833 -2.4809 37 1 7.2104 0.1765 -2.4009 38 1 5.9682 1.8453 -3.5800 39 1 3.8438 1.3789 -4.5736 40 1 3.8419 -0.1902 -3.7336 41 1 2.4763 1.4638 -2.4995 42 1 3.8810 2.5530 -2.3946 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037469620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:37 Heat of formation + Delta-G solvation = -35.850980 kcal Electronic energy + Delta-G solvation = -18289.918951 eV Core-core repulsion = 15688.976173 eV Total energy + Delta-G solvation = -2600.942779 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.71169 -38.03595 -35.33395 -33.94279 -32.42454 -31.73397 -30.06695 -27.26115 -25.85311 -23.95383 -23.60472 -22.89061 -21.62181 -20.12164 -18.66352 -17.30022 -16.81403 -16.53003 -16.11379 -15.73190 -15.54887 -15.10429 -14.85256 -14.43653 -14.22191 -13.72988 -13.57620 -13.51844 -13.26547 -12.94979 -12.83609 -12.59985 -12.49788 -12.38095 -12.32534 -12.10729 -11.96799 -11.73345 -11.39315 -11.31709 -11.17048 -10.97957 -10.53934 -9.34579 -9.05095 -8.21380 -6.32882 1.37902 1.41170 1.49098 2.38550 3.02246 3.11774 3.47164 3.78887 3.87159 3.98455 4.09618 4.20020 4.32939 4.33261 4.39405 4.47697 4.49874 4.55212 4.70780 4.75683 4.77901 4.87223 4.94239 4.98277 5.01229 5.06378 5.11523 5.15958 5.21649 5.25193 5.35570 5.39907 5.48030 5.65243 5.79231 6.06972 6.13729 6.34265 6.37382 6.50684 6.84048 7.36173 8.90532 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024531 B = 0.006085 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.130116 B = 4600.605019 C = 5370.073085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.155 4.155 3 C 0.056 3.944 4 N -0.544 5.544 5 C 0.077 3.923 6 C 0.041 3.959 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.003 3.997 10 N -0.931 5.931 11 Si 0.965 3.035 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.084 3.916 16 C -0.150 4.150 17 C 0.067 3.933 18 N -0.687 5.687 19 C 0.064 3.936 20 C -0.141 4.141 21 H 0.042 0.958 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.019 0.981 29 H 0.063 0.937 30 H -0.012 1.012 31 H -0.009 1.009 32 H 0.264 0.736 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.346 0.654 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.206 -5.173 -16.504 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.194 4.194 3 C -0.072 4.072 4 N -0.267 5.267 5 C -0.050 4.050 6 C 0.003 3.997 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.195 4.195 10 N -0.571 5.571 11 Si 0.789 3.211 12 H -0.191 1.191 13 H -0.207 1.207 14 H -0.192 1.192 15 C -0.024 4.024 16 C -0.190 4.190 17 C -0.063 4.063 18 N -0.316 5.316 19 C -0.066 4.066 20 C -0.180 4.180 21 H 0.061 0.939 22 H 0.089 0.911 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.007 0.993 31 H 0.009 0.991 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.164 0.836 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.403 -5.087 -16.849 17.605 hybrid contribution -0.366 -0.180 2.219 2.257 sum 0.037 -5.267 -14.630 15.549 Atomic orbital electron populations 1.21634 0.94145 1.02123 1.01951 1.22060 0.97781 0.98354 1.01156 1.22207 0.87252 0.95927 1.01845 1.62325 1.07608 1.54748 1.01975 1.21996 0.98811 0.95045 0.89189 1.18869 0.94674 0.94309 0.91804 1.21583 1.28937 1.14481 0.93343 0.92435 1.25946 0.95690 0.95162 1.02707 1.70102 1.38037 1.22963 1.26015 0.85511 0.79083 0.78532 0.77985 1.19133 1.20700 1.19195 1.21692 0.94859 0.95667 0.90233 1.22379 0.94929 1.01601 1.00060 1.21967 1.00246 0.97750 0.86354 1.60718 1.10118 1.19984 1.40734 1.22029 0.87015 1.01158 0.96404 1.22297 1.01495 0.99890 0.94364 0.93925 0.91101 0.91887 0.91075 0.94171 0.93307 0.89409 0.96306 0.91892 0.99326 0.99075 0.92765 0.94527 0.92510 0.92271 0.91016 0.89564 0.83644 0.88953 0.91010 0.90975 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.15 -4.67 5.26 30.60 0.16 -4.51 16 3 C 0.06 1.89 4.75 86.31 0.41 2.30 16 4 N -0.54 -19.79 4.60 -870.50 -4.01 -23.80 16 5 C 0.08 3.35 4.36 86.30 0.38 3.73 16 6 C 0.04 2.24 4.67 29.85 0.14 2.38 16 7 C -0.55 -31.81 9.11 25.60 0.23 -31.58 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.00 0.17 5.46 84.66 0.46 0.64 16 10 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 11 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 15 C 0.08 2.37 1.64 45.00 0.07 2.44 16 16 C -0.15 -4.05 4.93 30.65 0.15 -3.90 16 17 C 0.07 1.41 6.55 86.33 0.57 1.97 16 18 N -0.69 -13.26 6.87 -514.00 -3.53 -16.79 16 19 C 0.06 1.17 6.55 86.33 0.57 1.74 16 20 C -0.14 -3.19 5.06 30.64 0.15 -3.03 16 21 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.07 1.91 6.44 -2.39 -0.02 1.89 16 25 H 0.04 1.44 6.39 -2.38 -0.02 1.43 16 26 H 0.05 2.00 6.36 -2.39 -0.02 1.99 16 27 H 0.09 2.54 6.32 -2.39 -0.02 2.53 16 28 H 0.02 0.82 6.22 -2.39 -0.01 0.81 16 29 H 0.06 2.73 5.90 -2.38 -0.01 2.72 16 30 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 31 H -0.01 -0.53 6.69 -2.38 -0.02 -0.55 16 32 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.04 1.06 6.33 -2.39 -0.02 1.05 16 34 H 0.06 1.70 6.35 -2.39 -0.02 1.69 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.35 6.22 8.86 -89.70 -0.79 5.42 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 1.56 6.53 -2.39 -0.02 1.54 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -64.75 313.73 -1.03 -65.78 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.19 Total: 16.08 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 4.01 Total: -30.69 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -7.25 Total: -98.09 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.75 -1.03 -65.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037469620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.934 kcal (2) G-P(sol) polarization free energy of solvation -64.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds