Wall clock time and date at job start Mon Mar 30 2020 03:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46887 * 2 1 4 4 H 1.09005 * 109.46907 * 182.78594 * 3 2 1 5 5 C 1.50696 * 109.47259 * 302.78352 * 3 2 1 6 6 H 1.07997 * 120.00329 * 114.92432 * 5 3 2 7 7 C 1.37877 * 120.00115 * 294.92594 * 5 3 2 8 8 N 1.31514 * 119.99864 * 349.34527 * 7 5 3 9 9 Si 1.86806 * 120.00049 * 169.34336 * 7 5 3 10 10 H 1.48494 * 109.46879 * 60.00095 * 9 7 5 11 11 H 1.48505 * 109.46768 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47224 * 300.00090 * 9 7 5 13 13 N 1.46900 * 109.47496 * 62.78534 * 3 2 1 14 14 C 1.46903 * 111.00113 * 84.07958 * 13 3 2 15 15 C 1.52997 * 109.47261 * 183.49243 * 14 13 3 16 16 H 1.09004 * 110.64309 * 56.70238 * 15 14 13 17 17 C 1.54592 * 110.72288 * 293.54876 * 15 14 13 18 18 C 1.54001 * 105.13826 * 219.68277 * 17 15 14 19 19 N 1.47903 * 107.05649 * 358.77560 * 18 17 15 20 20 C 1.46905 * 110.99958 * 145.84226 * 19 18 17 21 21 C 1.53001 * 109.46957 * 183.71274 * 20 19 18 22 22 C 1.48536 * 105.82287 * 25.32998 * 19 18 17 23 23 H 1.09002 * 109.47621 * 301.51693 * 1 2 3 24 24 H 1.09008 * 109.47066 * 61.51294 * 1 2 3 25 25 H 1.08992 * 109.47509 * 181.51453 * 1 2 3 26 26 H 1.08994 * 109.47230 * 239.99872 * 2 1 3 27 27 H 1.08996 * 109.46987 * 119.99922 * 2 1 3 28 28 H 0.97000 * 120.00229 * 358.70528 * 8 7 5 29 29 H 1.00903 * 111.00012 * 320.13147 * 13 3 2 30 30 H 1.09001 * 109.47007 * 303.49674 * 14 13 3 31 31 H 1.09003 * 109.47019 * 63.49085 * 14 13 3 32 32 H 1.08992 * 110.31029 * 338.59819 * 17 15 14 33 33 H 1.08998 * 110.30857 * 100.67265 * 17 15 14 34 34 H 1.08996 * 109.91622 * 118.12509 * 18 17 15 35 35 H 1.08992 * 109.91592 * 239.42437 * 18 17 15 36 36 H 1.08999 * 109.47105 * 303.71684 * 20 19 18 37 37 H 1.08999 * 109.46573 * 63.71174 * 20 19 18 38 38 H 1.09005 * 109.47025 * 65.62584 * 21 20 19 39 39 H 1.08997 * 109.46925 * 185.61937 * 21 20 19 40 40 H 1.08994 * 109.47258 * 305.62412 * 21 20 19 41 41 H 1.09000 * 110.67054 * 202.35913 * 22 19 18 42 42 H 1.09003 * 110.66679 * 79.22032 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1289 1.4430 -0.0500 5 6 1.4821 2.1726 -1.1945 6 1 0.8008 2.9985 -1.0528 7 6 1.8414 1.7861 -2.4683 8 7 2.8225 0.9279 -2.6429 9 14 0.9346 2.4815 -3.9460 10 1 1.0794 3.9592 -3.9652 11 1 1.5077 1.9111 -5.1917 12 1 -0.5045 2.1262 -3.8559 13 7 1.6060 2.1154 1.2316 14 6 2.5295 1.8337 2.3388 15 6 1.9995 2.4777 3.6215 16 1 0.9921 2.1240 3.8412 17 6 2.0261 4.0194 3.5109 18 6 2.4809 4.5142 4.8965 19 7 2.6679 3.3171 5.7447 20 6 3.7760 3.5095 6.6898 21 6 3.9985 2.2208 7.4840 22 6 2.9538 2.1989 4.8098 23 1 -0.3634 0.5372 0.8761 24 1 -0.3633 0.4902 -0.9033 25 1 -0.3634 -1.0272 0.0272 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.3057 0.5812 -1.8766 29 1 0.6618 1.8541 1.4730 30 1 2.6097 0.7558 2.4797 31 1 3.5122 2.2437 2.1056 32 1 2.7367 4.3316 2.7457 33 1 1.0310 4.3994 3.2798 34 1 3.4222 5.0563 4.8066 35 1 1.7171 5.1602 5.3292 36 1 4.6835 3.7587 6.1398 37 1 3.5322 4.3212 7.3752 38 1 4.3393 1.4337 6.8113 39 1 4.7519 2.3932 8.2526 40 1 3.0629 1.9174 7.9538 41 1 2.7208 1.2404 5.2737 42 1 3.9933 2.2269 4.4830 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037484332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:42 Heat of formation + Delta-G solvation = -13.654659 kcal Electronic energy + Delta-G solvation = -17908.000415 eV Core-core repulsion = 15308.020141 eV Total energy + Delta-G solvation = -2599.980274 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.18345 -36.75545 -34.09422 -32.23087 -30.84868 -29.10698 -28.36558 -25.99594 -23.88685 -23.43268 -22.30346 -20.65618 -19.92911 -19.51488 -16.70239 -16.17217 -15.45327 -14.91201 -14.68003 -13.91514 -13.86336 -13.60091 -13.49799 -13.09031 -12.73742 -12.50558 -12.49098 -11.99684 -11.74688 -11.38576 -11.20641 -11.16455 -11.01526 -10.76961 -10.73162 -10.61082 -10.32000 -10.14830 -10.03050 -9.98425 -9.82458 -8.65760 -8.46025 -8.17784 -7.26284 -6.28807 -3.95053 3.47756 3.48661 3.67472 3.95553 4.55200 4.70141 4.75232 4.97719 5.08155 5.19718 5.29601 5.35245 5.41439 5.47008 5.59831 5.64659 5.72976 5.81008 5.87876 5.89080 6.00612 6.02653 6.11511 6.14636 6.23156 6.25275 6.34908 6.45085 6.58226 6.70253 6.90275 7.01377 7.01643 7.08168 7.27222 7.30010 7.97163 8.31472 8.50324 8.69558 8.96184 9.72435 11.07959 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039800 B = 0.004762 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.346406 B = 5878.995760 C = 6131.700320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.150 4.150 3 C 0.204 3.796 4 H 0.023 0.977 5 C -0.571 4.571 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 1.064 2.936 10 H -0.289 1.289 11 H -0.285 1.285 12 H -0.289 1.289 13 N -0.674 5.674 14 C 0.067 3.933 15 C -0.087 4.087 16 H 0.076 0.924 17 C -0.112 4.112 18 C 0.033 3.967 19 N -0.520 5.520 20 C 0.042 3.958 21 C -0.150 4.150 22 C 0.041 3.959 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.027 0.973 26 H 0.065 0.935 27 H 0.019 0.981 28 H 0.267 0.733 29 H 0.327 0.673 30 H 0.017 0.983 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 2.730 15.707 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.190 4.190 3 C 0.096 3.904 4 H 0.041 0.959 5 C -0.610 4.610 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.551 5.551 9 Si 0.893 3.107 10 H -0.216 1.216 11 H -0.210 1.210 12 H -0.215 1.215 13 N -0.305 5.305 14 C -0.063 4.063 15 C -0.106 4.106 16 H 0.095 0.905 17 C -0.150 4.150 18 C -0.095 4.095 19 N -0.244 5.244 20 C -0.087 4.087 21 C -0.208 4.208 22 C -0.087 4.087 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.146 0.854 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.061 3.195 14.207 14.562 hybrid contribution 0.689 -0.759 1.479 1.800 sum 0.629 2.436 15.686 15.886 Atomic orbital electron populations 1.21562 0.96808 0.98502 1.01796 1.22192 0.96065 1.01400 0.99306 1.19300 0.95117 0.88258 0.87770 0.95911 1.21804 1.30337 1.17951 0.90929 0.92700 1.25698 0.96297 0.96092 1.00443 1.70810 1.19137 1.30732 1.34465 0.83615 0.75575 0.75735 0.75805 1.21556 1.21036 1.21537 1.60789 1.04305 1.62524 1.02886 1.21921 0.97373 0.96536 0.90489 1.22080 0.99075 0.95823 0.93626 0.90539 1.22293 1.02547 0.95060 0.95101 1.22928 1.00091 0.92821 0.93625 1.64810 1.39508 1.04541 1.15570 1.22238 0.92224 0.98591 0.95624 1.21800 1.01874 0.97266 0.99833 1.23233 0.97959 0.95110 0.92430 0.94566 0.91258 0.95429 0.91633 0.96183 0.92173 0.85433 0.96440 0.92046 0.90793 0.90965 0.94133 0.90724 0.94931 0.90958 0.92703 0.92429 0.91798 0.90382 0.93738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.40 37.16 0.35 -2.32 16 2 C -0.15 -3.42 5.49 -26.73 -0.15 -3.56 16 3 C 0.20 5.00 1.95 -68.86 -0.13 4.86 16 4 H 0.02 0.62 7.12 -51.93 -0.37 0.25 16 5 C -0.57 -15.63 7.39 -34.44 -0.25 -15.88 16 6 H 0.05 1.54 7.84 -52.49 -0.41 1.13 16 7 C 0.02 0.51 5.20 -17.82 -0.09 0.42 16 8 N -0.91 -27.05 12.98 55.43 0.72 -26.33 16 9 Si 1.06 25.09 29.92 -169.99 -5.09 20.00 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.67 -14.04 6.06 -107.95 -0.65 -14.69 16 14 C 0.07 1.19 4.81 -3.82 -0.02 1.17 16 15 C -0.09 -1.27 3.21 -88.76 -0.29 -1.56 16 16 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 17 C -0.11 -1.60 6.33 -25.37 -0.16 -1.76 16 18 C 0.03 0.41 6.70 -2.75 -0.02 0.39 16 19 N -0.52 -6.49 5.35 -230.44 -1.23 -7.73 16 20 C 0.04 0.44 5.54 -3.82 -0.02 0.41 16 21 C -0.15 -1.38 9.60 37.16 0.36 -1.02 16 22 C 0.04 0.53 4.83 -1.90 -0.01 0.52 16 23 H 0.04 0.68 6.29 -51.93 -0.33 0.35 16 24 H 0.07 1.57 7.19 -51.92 -0.37 1.20 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 1.66 6.57 -51.93 -0.34 1.32 16 27 H 0.02 0.42 7.29 -51.93 -0.38 0.04 16 28 H 0.27 7.90 6.20 -40.82 -0.25 7.64 16 29 H 0.33 6.54 6.38 -39.29 -0.25 6.29 16 30 H 0.02 0.31 7.26 -51.93 -0.38 -0.07 16 31 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 32 H 0.07 1.17 7.80 -51.93 -0.41 0.76 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.04 0.48 7.67 -51.93 -0.40 0.08 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.35 7.98 -51.93 -0.41 -0.07 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.52 7.22 -51.93 -0.37 0.14 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.97 7.78 -51.93 -0.40 0.56 16 42 H 0.04 0.59 7.92 -51.93 -0.41 0.18 16 LS Contribution 319.66 15.07 4.82 4.82 Total: -1.00 -28.54 319.66 -9.53 -38.07 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.66 Total: 4.19 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -0.44 Total: -18.33 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -1.17 Total: -48.75 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.09 Total: 20.00 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.54 -9.53 -38.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037484332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.418 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds