Wall clock time and date at job start Mon Mar 30 2020 03:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46887 * 2 1 4 4 H 1.09005 * 109.46907 * 182.78594 * 3 2 1 5 5 C 1.50696 * 109.47259 * 302.78352 * 3 2 1 6 6 H 1.07997 * 120.00329 * 114.92432 * 5 3 2 7 7 C 1.37877 * 120.00115 * 294.92594 * 5 3 2 8 8 N 1.31514 * 119.99864 * 349.34527 * 7 5 3 9 9 Si 1.86806 * 120.00049 * 169.34336 * 7 5 3 10 10 H 1.48494 * 109.46879 * 60.00095 * 9 7 5 11 11 H 1.48505 * 109.46768 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47224 * 300.00090 * 9 7 5 13 13 N 1.46900 * 109.47496 * 62.78534 * 3 2 1 14 14 C 1.46903 * 111.00113 * 84.07958 * 13 3 2 15 15 C 1.52997 * 109.47261 * 183.49243 * 14 13 3 16 16 H 1.09004 * 110.64309 * 56.70238 * 15 14 13 17 17 C 1.54592 * 110.72288 * 293.54876 * 15 14 13 18 18 C 1.54001 * 105.13826 * 219.68277 * 17 15 14 19 19 N 1.47903 * 107.05649 * 358.77560 * 18 17 15 20 20 C 1.46905 * 110.99958 * 145.84226 * 19 18 17 21 21 C 1.53001 * 109.46957 * 183.71274 * 20 19 18 22 22 C 1.48536 * 105.82287 * 25.32998 * 19 18 17 23 23 H 1.09002 * 109.47621 * 301.51693 * 1 2 3 24 24 H 1.09008 * 109.47066 * 61.51294 * 1 2 3 25 25 H 1.08992 * 109.47509 * 181.51453 * 1 2 3 26 26 H 1.08994 * 109.47230 * 239.99872 * 2 1 3 27 27 H 1.08996 * 109.46987 * 119.99922 * 2 1 3 28 28 H 0.97000 * 120.00229 * 358.70528 * 8 7 5 29 29 H 1.00903 * 111.00012 * 320.13147 * 13 3 2 30 30 H 1.09001 * 109.47007 * 303.49674 * 14 13 3 31 31 H 1.09003 * 109.47019 * 63.49085 * 14 13 3 32 32 H 1.08992 * 110.31029 * 338.59819 * 17 15 14 33 33 H 1.08998 * 110.30857 * 100.67265 * 17 15 14 34 34 H 1.08996 * 109.91622 * 118.12509 * 18 17 15 35 35 H 1.08992 * 109.91592 * 239.42437 * 18 17 15 36 36 H 1.08999 * 109.47105 * 303.71684 * 20 19 18 37 37 H 1.08999 * 109.46573 * 63.71174 * 20 19 18 38 38 H 1.09005 * 109.47025 * 65.62584 * 21 20 19 39 39 H 1.08997 * 109.46925 * 185.61937 * 21 20 19 40 40 H 1.08994 * 109.47258 * 305.62412 * 21 20 19 41 41 H 1.09000 * 110.67054 * 202.35913 * 22 19 18 42 42 H 1.09003 * 110.66679 * 79.22032 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1289 1.4430 -0.0500 5 6 1.4821 2.1726 -1.1945 6 1 0.8008 2.9985 -1.0528 7 6 1.8414 1.7861 -2.4683 8 7 2.8225 0.9279 -2.6429 9 14 0.9346 2.4815 -3.9460 10 1 1.0794 3.9592 -3.9652 11 1 1.5077 1.9111 -5.1917 12 1 -0.5045 2.1262 -3.8559 13 7 1.6060 2.1154 1.2316 14 6 2.5295 1.8337 2.3388 15 6 1.9995 2.4777 3.6215 16 1 0.9921 2.1240 3.8412 17 6 2.0261 4.0194 3.5109 18 6 2.4809 4.5142 4.8965 19 7 2.6679 3.3171 5.7447 20 6 3.7760 3.5095 6.6898 21 6 3.9985 2.2208 7.4840 22 6 2.9538 2.1989 4.8098 23 1 -0.3634 0.5372 0.8761 24 1 -0.3633 0.4902 -0.9033 25 1 -0.3634 -1.0272 0.0272 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.3057 0.5812 -1.8766 29 1 0.6618 1.8541 1.4730 30 1 2.6097 0.7558 2.4797 31 1 3.5122 2.2437 2.1056 32 1 2.7367 4.3316 2.7457 33 1 1.0310 4.3994 3.2798 34 1 3.4222 5.0563 4.8066 35 1 1.7171 5.1602 5.3292 36 1 4.6835 3.7587 6.1398 37 1 3.5322 4.3212 7.3752 38 1 4.3393 1.4337 6.8113 39 1 4.7519 2.3932 8.2526 40 1 3.0629 1.9174 7.9538 41 1 2.7208 1.2404 5.2737 42 1 3.9933 2.2269 4.4830 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037484332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:41 Heat of formation + Delta-G solvation = -32.222466 kcal Electronic energy + Delta-G solvation = -17908.805575 eV Core-core repulsion = 15308.020141 eV Total energy + Delta-G solvation = -2600.785435 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29049 -38.48780 -35.47502 -33.88316 -32.42201 -30.43362 -29.36021 -27.80018 -25.62507 -25.06704 -23.36601 -21.71636 -21.33794 -21.16464 -18.69760 -17.23695 -16.75506 -16.26984 -15.94934 -15.67136 -15.40203 -15.13440 -14.86558 -14.28564 -14.22421 -14.02483 -13.68555 -13.26199 -13.15582 -12.98389 -12.60829 -12.41794 -12.20268 -12.17660 -12.09510 -11.95076 -11.84210 -11.76830 -11.67208 -11.61275 -11.45334 -10.68496 -10.30799 -9.43023 -9.00650 -8.51408 -6.18499 1.56118 1.62958 1.81884 2.61084 2.98579 3.25795 3.39961 3.72523 3.88305 3.99818 4.18428 4.26944 4.32793 4.33385 4.34513 4.44471 4.51738 4.56118 4.60170 4.66774 4.69026 4.77583 4.93365 4.93564 4.99947 5.01672 5.09738 5.14249 5.21381 5.25985 5.29664 5.37971 5.42039 5.53468 5.88394 6.00458 6.09709 6.22173 6.57167 6.79314 6.81432 7.56793 8.85014 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039800 B = 0.004762 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.346406 B = 5878.995760 C = 6131.700320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.142 4.142 3 C 0.207 3.793 4 H -0.012 1.012 5 C -0.576 4.576 6 H 0.045 0.955 7 C -0.028 4.028 8 N -0.939 5.939 9 Si 1.107 2.893 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.270 1.270 13 N -0.677 5.677 14 C 0.073 3.927 15 C -0.080 4.080 16 H 0.080 0.920 17 C -0.111 4.111 18 C 0.038 3.962 19 N -0.525 5.525 20 C 0.039 3.961 21 C -0.146 4.146 22 C 0.048 3.952 23 H 0.055 0.945 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.255 0.745 29 H 0.334 0.666 30 H 0.019 0.981 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 3.057 17.244 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.182 4.182 3 C 0.098 3.902 4 H 0.006 0.994 5 C -0.615 4.615 6 H 0.064 0.936 7 C -0.226 4.226 8 N -0.577 5.577 9 Si 0.930 3.070 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.308 5.308 14 C -0.057 4.057 15 C -0.099 4.099 16 H 0.099 0.901 17 C -0.149 4.149 18 C -0.090 4.090 19 N -0.250 5.250 20 C -0.089 4.089 21 C -0.204 4.204 22 C -0.081 4.081 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.154 0.846 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.049 0.951 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.092 3.528 15.780 16.206 hybrid contribution 1.048 -0.840 1.071 1.718 sum -0.045 2.688 16.851 17.064 Atomic orbital electron populations 1.21475 0.94814 1.00138 1.01492 1.22045 0.97734 0.99783 0.98625 1.19087 0.92892 0.89473 0.88741 0.99397 1.22061 1.29635 1.17628 0.92164 0.93625 1.26975 0.96272 0.95870 1.03484 1.70925 1.20484 1.32370 1.33910 0.83054 0.75447 0.75796 0.72696 1.20201 1.21444 1.19556 1.60647 1.05187 1.62248 1.02763 1.21884 0.96142 0.96836 0.90800 1.21983 0.99531 0.95815 0.92614 0.90113 1.22239 1.01907 0.94841 0.95913 1.22891 1.00648 0.93022 0.92402 1.64854 1.40558 1.04148 1.15410 1.22340 0.91441 0.99740 0.95409 1.21777 1.02298 0.96371 0.99951 1.23153 0.97126 0.95952 0.91840 0.92617 0.93578 0.92982 0.94641 0.94449 0.93494 0.84638 0.96258 0.93594 0.92852 0.91150 0.93685 0.89521 0.95126 0.89787 0.93221 0.90725 0.91990 0.89423 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.40 71.98 0.68 -4.18 16 2 C -0.14 -6.47 5.49 30.60 0.17 -6.30 16 3 C 0.21 10.32 1.95 44.17 0.09 10.40 16 4 H -0.01 -0.67 7.12 -2.38 -0.02 -0.68 16 5 C -0.58 -31.87 7.39 25.60 0.19 -31.68 16 6 H 0.05 2.56 7.84 -2.91 -0.02 2.54 16 7 C -0.03 -1.59 5.20 84.65 0.44 -1.15 16 8 N -0.94 -56.81 12.98 21.45 0.28 -56.53 16 9 Si 1.11 50.44 29.92 68.60 2.05 52.49 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 N -0.68 -28.10 6.06 -495.44 -3.00 -31.10 16 14 C 0.07 2.57 4.81 86.30 0.42 2.99 16 15 C -0.08 -2.25 3.21 -9.59 -0.03 -2.28 16 16 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 17 C -0.11 -3.07 6.33 31.47 0.20 -2.87 16 18 C 0.04 0.88 6.70 86.45 0.58 1.46 16 19 N -0.53 -12.00 5.35 -882.99 -4.72 -16.72 16 20 C 0.04 0.72 5.54 86.30 0.48 1.20 16 21 C -0.15 -2.35 9.60 71.98 0.69 -1.66 16 22 C 0.05 1.16 4.83 86.65 0.42 1.58 16 23 H 0.05 1.98 6.29 -2.39 -0.02 1.96 16 24 H 0.05 2.04 7.19 -2.38 -0.02 2.03 16 25 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.03 1.82 6.57 -2.39 -0.02 1.80 16 27 H 0.04 1.54 7.29 -2.39 -0.02 1.52 16 28 H 0.26 15.66 6.20 -92.71 -0.57 15.09 16 29 H 0.33 12.98 6.38 -89.69 -0.57 12.40 16 30 H 0.02 0.67 7.26 -2.39 -0.02 0.66 16 31 H 0.05 1.74 8.06 -2.39 -0.02 1.72 16 32 H 0.05 1.69 7.80 -2.39 -0.02 1.67 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.04 1.00 7.67 -2.39 -0.02 0.98 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.03 0.59 7.98 -2.39 -0.02 0.57 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 0.84 7.22 -2.38 -0.02 0.82 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.09 1.98 7.78 -2.39 -0.02 1.97 16 42 H 0.04 1.01 7.92 -2.39 -0.02 0.99 16 Total: -1.00 -61.30 319.66 -0.50 -61.80 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.59 Total: 22.55 kcal Atomic # 6 Polarization: -36.81 SS G_CDS: 4.31 Total: -32.49 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -7.45 Total: -104.35 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 2.05 Total: 52.49 kcal Total: -61.30 -0.50 -61.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037484332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.579 kcal (2) G-P(sol) polarization free energy of solvation -61.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds