Wall clock time and date at job start Mon Mar 30 2020 03:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.46796 * 2 1 4 4 H 1.09000 * 109.46653 * 304.24719 * 3 2 1 5 5 C 1.50709 * 109.47064 * 184.25472 * 3 2 1 6 6 H 1.07997 * 119.99629 * 239.99914 * 5 3 2 7 7 C 1.37882 * 119.99819 * 59.99488 * 5 3 2 8 8 N 1.31510 * 119.99880 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99759 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46772 * 60.00041 * 9 7 5 11 11 H 1.48496 * 109.47108 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47030 * 300.00450 * 9 7 5 13 13 N 1.46893 * 109.47494 * 64.25419 * 3 2 1 14 14 C 1.46901 * 110.99798 * 205.86113 * 13 3 2 15 15 C 1.53004 * 109.46868 * 174.81273 * 14 13 3 16 16 H 1.09000 * 110.88044 * 57.38899 * 15 14 13 17 17 C 1.55138 * 110.98781 * 293.53881 * 15 14 13 18 18 C 1.54328 * 103.01876 * 206.25448 * 17 15 14 19 19 N 1.47442 * 107.23121 * 22.29216 * 18 17 15 20 20 C 1.46899 * 111.00279 * 123.25422 * 19 18 17 21 21 C 1.52999 * 109.46987 * 69.87062 * 20 19 18 22 22 C 1.47842 * 108.56755 * 0.98289 * 19 18 17 23 23 H 1.09002 * 109.46955 * 174.89255 * 1 2 3 24 24 H 1.09003 * 109.47884 * 294.88827 * 1 2 3 25 25 H 1.09000 * 109.47426 * 54.89561 * 1 2 3 26 26 H 1.08999 * 109.47588 * 239.99721 * 2 1 3 27 27 H 1.09003 * 109.47453 * 119.99248 * 2 1 3 28 28 H 0.97005 * 119.99569 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00520 * 81.90307 * 13 3 2 30 30 H 1.08997 * 109.47717 * 54.81181 * 14 13 3 31 31 H 1.09003 * 109.47264 * 294.80559 * 14 13 3 32 32 H 1.09002 * 110.70116 * 87.87978 * 17 15 14 33 33 H 1.08996 * 110.71148 * 324.64322 * 17 15 14 34 34 H 1.08996 * 109.88807 * 262.88023 * 18 17 15 35 35 H 1.08999 * 109.88335 * 141.69179 * 18 17 15 36 36 H 1.09000 * 109.46737 * 189.86921 * 20 19 18 37 37 H 1.08997 * 109.46967 * 309.87081 * 20 19 18 38 38 H 1.08998 * 109.47355 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.47009 * 300.00269 * 21 20 19 40 40 H 1.09007 * 109.47278 * 60.00044 * 21 20 19 41 41 H 1.09001 * 110.37451 * 94.73605 * 22 19 18 42 42 H 1.09002 * 110.37449 * 217.07906 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6156 1.9778 -0.8495 5 6 3.5432 1.4440 -0.1054 6 1 4.1389 1.8919 0.6761 7 6 4.1581 0.8732 -1.1996 8 7 3.4326 0.3281 -2.1515 9 14 6.0215 0.8755 -1.3306 10 1 6.5999 0.1467 -0.1733 11 1 6.4299 0.2065 -2.5919 12 1 6.5159 2.2758 -1.3310 13 7 1.6359 2.1048 1.2474 14 6 1.5394 3.5591 1.0640 15 6 0.9936 4.1992 2.3420 16 1 1.6240 3.9571 3.1976 17 6 -0.4755 3.7698 2.5949 18 6 -1.0434 4.9431 3.4212 19 7 -0.1976 6.1195 3.1477 20 6 -1.0013 7.2388 2.6387 21 6 -1.8856 7.7839 3.7620 22 6 0.8472 5.7324 2.1759 23 1 -0.3633 -1.0236 -0.0915 24 1 -0.3635 0.4325 0.9322 25 1 -0.3634 0.5910 -0.8407 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 3.8652 -0.0731 -2.9215 29 1 2.2686 1.8764 1.9994 30 1 0.8681 3.7769 0.2333 31 1 2.5279 3.9645 0.8482 32 1 -0.5129 2.8424 3.1665 33 1 -1.0142 3.6653 1.6532 34 1 -1.0084 4.6999 4.4831 35 1 -2.0706 5.1465 3.1187 36 1 -0.3398 8.0281 2.2815 37 1 -1.6291 6.8917 1.8180 38 1 -2.4817 8.6148 3.3845 39 1 -2.5470 6.9946 4.1192 40 1 -1.2578 8.1310 4.5827 41 1 0.5309 5.9757 1.1616 42 1 1.7875 6.2311 2.4110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037484333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:44 Heat of formation + Delta-G solvation = -15.629618 kcal Electronic energy + Delta-G solvation = -17836.768095 eV Core-core repulsion = 15236.702180 eV Total energy + Delta-G solvation = -2600.065915 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.08194 -36.20182 -33.86056 -32.04479 -31.00705 -29.05848 -28.72350 -26.21556 -23.67149 -22.91336 -22.22025 -20.48936 -19.80287 -19.22762 -16.65291 -16.10580 -15.67466 -14.82070 -14.28061 -13.99846 -13.78995 -13.42423 -13.33515 -13.05194 -12.67779 -12.42739 -12.10834 -11.67762 -11.55159 -11.25501 -11.18695 -11.13664 -10.99834 -10.85861 -10.67227 -10.61979 -10.49572 -10.26739 -10.04792 -9.58185 -9.42309 -9.04390 -8.37664 -8.26455 -7.21555 -5.99167 -4.12334 3.28081 3.33309 3.35760 4.02822 4.39519 4.76785 4.89026 5.04305 5.17881 5.25739 5.27671 5.40305 5.44850 5.61218 5.65873 5.78947 5.84179 5.86988 6.03304 6.04150 6.12456 6.14790 6.34166 6.41886 6.42952 6.50866 6.63317 6.71650 6.74409 7.03993 7.13652 7.16077 7.17986 7.45403 7.60381 7.78165 8.10091 8.16507 8.34879 8.68119 9.00875 9.55310 11.00742 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032375 B = 0.005048 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.653333 B = 5545.176904 C = 6135.471817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.546 4.546 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.686 5.686 14 C 0.078 3.922 15 C -0.090 4.090 16 H 0.077 0.923 17 C -0.120 4.120 18 C 0.038 3.962 19 N -0.533 5.533 20 C 0.045 3.955 21 C -0.146 4.146 22 C 0.046 3.954 23 H 0.023 0.977 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.089 0.911 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.326 0.674 30 H 0.057 0.943 31 H 0.027 0.973 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 9.513 8.317 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.048 0.952 5 C -0.585 4.585 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.315 5.315 14 C -0.052 4.052 15 C -0.110 4.110 16 H 0.095 0.905 17 C -0.158 4.158 18 C -0.089 4.089 19 N -0.257 5.257 20 C -0.083 4.083 21 C -0.204 4.204 22 C -0.082 4.082 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.107 0.893 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.758 9.492 8.474 15.447 hybrid contribution 1.669 -0.010 -1.022 1.957 sum -7.089 9.482 7.452 13.989 Atomic orbital electron populations 1.21679 0.99055 0.98188 1.00302 1.21489 0.92018 0.99285 1.01613 1.19133 0.92610 0.91137 0.86368 0.95229 1.21847 0.92778 1.38043 1.05835 0.92941 1.24932 0.97945 0.94984 0.95649 1.69870 1.34966 1.38022 1.09519 0.86717 0.86094 0.78167 0.77359 1.20268 1.21243 1.20425 1.60862 1.55136 1.05870 1.09661 1.21676 0.98555 0.90284 0.94733 1.22305 0.96620 0.92828 0.99229 0.90455 1.22644 0.95542 0.97772 0.99886 1.22906 0.95388 0.90151 1.00494 1.63616 1.12867 1.06534 1.42687 1.22226 0.95732 0.94245 0.96139 1.21771 0.99208 1.00420 0.98972 1.23048 0.95274 0.95970 0.93910 0.95750 0.93471 0.94589 0.89275 0.95119 0.92849 0.85776 0.92406 0.95429 0.90500 0.91635 0.91003 0.93208 0.91151 0.94901 0.92645 0.92806 0.92023 0.93592 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.73 37.15 0.36 -2.42 16 2 C -0.11 -2.52 5.45 -26.73 -0.15 -2.67 16 3 C 0.22 5.28 1.98 -68.86 -0.14 5.15 16 4 H 0.03 0.81 7.70 -51.93 -0.40 0.41 16 5 C -0.55 -14.65 8.47 -34.43 -0.29 -14.94 16 6 H 0.05 1.40 7.73 -52.49 -0.41 0.99 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.01 11.30 55.43 0.63 -24.38 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.69 -14.03 5.56 -107.95 -0.60 -14.63 16 14 C 0.08 1.43 4.96 -3.82 -0.02 1.41 16 15 C -0.09 -1.35 3.27 -88.48 -0.29 -1.64 16 16 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 17 C -0.12 -1.68 6.24 -24.90 -0.16 -1.83 16 18 C 0.04 0.47 6.21 -2.83 -0.02 0.46 16 19 N -0.53 -6.82 5.16 -231.25 -1.19 -8.01 16 20 C 0.04 0.49 5.26 -3.82 -0.02 0.47 16 21 C -0.15 -1.35 9.94 37.16 0.37 -0.98 16 22 C 0.05 0.63 6.15 -2.30 -0.01 0.61 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.92 7.88 -51.93 -0.41 0.51 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 29 H 0.33 6.67 8.45 -39.29 -0.33 6.34 16 30 H 0.06 1.10 7.89 -51.93 -0.41 0.69 16 31 H 0.03 0.55 8.11 -51.93 -0.42 0.12 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.98 8.01 -51.93 -0.42 0.56 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.57 6.91 -51.93 -0.36 0.21 16 36 H 0.07 0.73 8.07 -51.93 -0.42 0.32 16 37 H 0.03 0.37 7.96 -51.93 -0.41 -0.05 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.50 7.14 -51.93 -0.37 0.13 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.63 7.70 -51.93 -0.40 0.23 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -27.05 326.94 -9.72 -36.76 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -8.01 Total: 3.87 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -0.45 Total: -14.63 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -1.17 Total: -47.02 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.05 -9.72 -36.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037484333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.134 kcal (2) G-P(sol) polarization free energy of solvation -27.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds