Wall clock time and date at job start Mon Mar 30 2020 03:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.46796 * 2 1 4 4 H 1.09000 * 109.46653 * 304.24719 * 3 2 1 5 5 C 1.50709 * 109.47064 * 184.25472 * 3 2 1 6 6 H 1.07997 * 119.99629 * 239.99914 * 5 3 2 7 7 C 1.37882 * 119.99819 * 59.99488 * 5 3 2 8 8 N 1.31510 * 119.99880 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99759 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46772 * 60.00041 * 9 7 5 11 11 H 1.48496 * 109.47108 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47030 * 300.00450 * 9 7 5 13 13 N 1.46893 * 109.47494 * 64.25419 * 3 2 1 14 14 C 1.46901 * 110.99798 * 205.86113 * 13 3 2 15 15 C 1.53004 * 109.46868 * 174.81273 * 14 13 3 16 16 H 1.09000 * 110.88044 * 57.38899 * 15 14 13 17 17 C 1.55138 * 110.98781 * 293.53881 * 15 14 13 18 18 C 1.54328 * 103.01876 * 206.25448 * 17 15 14 19 19 N 1.47442 * 107.23121 * 22.29216 * 18 17 15 20 20 C 1.46899 * 111.00279 * 123.25422 * 19 18 17 21 21 C 1.52999 * 109.46987 * 69.87062 * 20 19 18 22 22 C 1.47842 * 108.56755 * 0.98289 * 19 18 17 23 23 H 1.09002 * 109.46955 * 174.89255 * 1 2 3 24 24 H 1.09003 * 109.47884 * 294.88827 * 1 2 3 25 25 H 1.09000 * 109.47426 * 54.89561 * 1 2 3 26 26 H 1.08999 * 109.47588 * 239.99721 * 2 1 3 27 27 H 1.09003 * 109.47453 * 119.99248 * 2 1 3 28 28 H 0.97005 * 119.99569 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00520 * 81.90307 * 13 3 2 30 30 H 1.08997 * 109.47717 * 54.81181 * 14 13 3 31 31 H 1.09003 * 109.47264 * 294.80559 * 14 13 3 32 32 H 1.09002 * 110.70116 * 87.87978 * 17 15 14 33 33 H 1.08996 * 110.71148 * 324.64322 * 17 15 14 34 34 H 1.08996 * 109.88807 * 262.88023 * 18 17 15 35 35 H 1.08999 * 109.88335 * 141.69179 * 18 17 15 36 36 H 1.09000 * 109.46737 * 189.86921 * 20 19 18 37 37 H 1.08997 * 109.46967 * 309.87081 * 20 19 18 38 38 H 1.08998 * 109.47355 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.47009 * 300.00269 * 21 20 19 40 40 H 1.09007 * 109.47278 * 60.00044 * 21 20 19 41 41 H 1.09001 * 110.37451 * 94.73605 * 22 19 18 42 42 H 1.09002 * 110.37449 * 217.07906 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6156 1.9778 -0.8495 5 6 3.5432 1.4440 -0.1054 6 1 4.1389 1.8919 0.6761 7 6 4.1581 0.8732 -1.1996 8 7 3.4326 0.3281 -2.1515 9 14 6.0215 0.8755 -1.3306 10 1 6.5999 0.1467 -0.1733 11 1 6.4299 0.2065 -2.5919 12 1 6.5159 2.2758 -1.3310 13 7 1.6359 2.1048 1.2474 14 6 1.5394 3.5591 1.0640 15 6 0.9936 4.1992 2.3420 16 1 1.6240 3.9571 3.1976 17 6 -0.4755 3.7698 2.5949 18 6 -1.0434 4.9431 3.4212 19 7 -0.1976 6.1195 3.1477 20 6 -1.0013 7.2388 2.6387 21 6 -1.8856 7.7839 3.7620 22 6 0.8472 5.7324 2.1759 23 1 -0.3633 -1.0236 -0.0915 24 1 -0.3635 0.4325 0.9322 25 1 -0.3634 0.5910 -0.8407 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 3.8652 -0.0731 -2.9215 29 1 2.2686 1.8764 1.9994 30 1 0.8681 3.7769 0.2333 31 1 2.5279 3.9645 0.8482 32 1 -0.5129 2.8424 3.1665 33 1 -1.0142 3.6653 1.6532 34 1 -1.0084 4.6999 4.4831 35 1 -2.0706 5.1465 3.1187 36 1 -0.3398 8.0281 2.2815 37 1 -1.6291 6.8917 1.8180 38 1 -2.4817 8.6148 3.3845 39 1 -2.5470 6.9946 4.1192 40 1 -1.2578 8.1310 4.5827 41 1 0.5309 5.9757 1.1616 42 1 1.7875 6.2311 2.4110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037484333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:44 Heat of formation + Delta-G solvation = -32.310429 kcal Electronic energy + Delta-G solvation = -17837.491429 eV Core-core repulsion = 15236.702180 eV Total energy + Delta-G solvation = -2600.789249 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19089 -37.94278 -35.25802 -33.80663 -32.59361 -30.15979 -29.97611 -28.03782 -25.31539 -23.95796 -23.81998 -21.74416 -21.21679 -20.75645 -18.68116 -17.22549 -16.79359 -16.68923 -15.76040 -15.51910 -15.11054 -14.72133 -14.60312 -14.50439 -14.15428 -13.64305 -13.49989 -13.16342 -13.08447 -12.94156 -12.64284 -12.50586 -12.43940 -12.18348 -12.12974 -11.98192 -11.85464 -11.65107 -11.47833 -11.45767 -11.21718 -10.96546 -10.46532 -9.26688 -9.02276 -8.05414 -6.28220 1.39097 1.39563 1.47217 2.39851 3.02872 3.14083 3.50875 3.81431 3.99518 4.10602 4.27633 4.35569 4.37895 4.55811 4.60058 4.64433 4.65515 4.76316 4.79087 4.80728 4.91533 4.94156 4.99470 5.06268 5.11169 5.17168 5.19299 5.31307 5.38512 5.42077 5.47746 5.51934 5.63624 5.77472 6.01798 6.10994 6.19304 6.20889 6.39069 6.82409 7.02517 7.43496 8.90590 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032375 B = 0.005048 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.653333 B = 5545.176904 C = 6135.471817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C 0.222 3.778 4 H -0.005 1.005 5 C -0.562 4.562 6 H 0.050 0.950 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.674 5.674 14 C 0.085 3.915 15 C -0.083 4.083 16 H 0.078 0.922 17 C -0.116 4.116 18 C 0.044 3.956 19 N -0.538 5.538 20 C 0.041 3.959 21 C -0.140 4.140 22 C 0.051 3.949 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.027 0.973 26 H 0.059 0.941 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.329 0.671 30 H 0.046 0.954 31 H 0.010 0.990 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.680 10.225 9.567 16.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 C 0.113 3.887 4 H 0.013 0.987 5 C -0.601 4.601 6 H 0.068 0.932 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.776 3.224 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.302 5.302 14 C -0.046 4.046 15 C -0.102 4.102 16 H 0.097 0.903 17 C -0.154 4.154 18 C -0.084 4.084 19 N -0.263 5.263 20 C -0.087 4.087 21 C -0.198 4.198 22 C -0.078 4.078 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.145 0.855 30 H 0.065 0.935 31 H 0.028 0.972 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.139 10.215 9.740 16.815 hybrid contribution 1.766 -0.205 -1.421 2.275 sum -7.374 10.010 8.320 14.960 Atomic orbital electron populations 1.21534 0.96398 0.99450 1.00584 1.21346 0.94370 0.98320 0.99979 1.18917 0.91431 0.91528 0.86811 0.98661 1.22168 0.94117 1.37918 1.05883 0.93199 1.25669 1.02179 0.94738 0.95423 1.70004 1.36544 1.38568 1.09895 0.85737 0.81010 0.78183 0.77446 1.19644 1.20901 1.20092 1.60793 1.54511 1.07031 1.07906 1.21638 0.97528 0.89024 0.96386 1.22163 0.97218 0.93748 0.97101 0.90332 1.22582 0.94544 0.98605 0.99680 1.22883 0.95741 0.89150 1.00584 1.63662 1.13170 1.07084 1.42363 1.22328 0.95858 0.93708 0.96793 1.21731 0.98945 1.00904 0.98223 1.22971 0.95985 0.94724 0.94090 0.93790 0.92251 0.95335 0.92259 0.95261 0.92895 0.85479 0.93542 0.97212 0.90541 0.92749 0.90173 0.92105 0.90769 0.95088 0.91021 0.92747 0.92248 0.93975 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 9.73 71.98 0.70 -4.24 16 2 C -0.10 -4.89 5.45 30.59 0.17 -4.72 16 3 C 0.22 11.09 1.98 44.18 0.09 11.18 16 4 H 0.00 -0.26 7.70 -2.39 -0.02 -0.28 16 5 C -0.56 -30.52 8.47 25.60 0.22 -30.30 16 6 H 0.05 2.67 7.73 -2.91 -0.02 2.65 16 7 C 0.02 1.10 5.29 84.66 0.45 1.55 16 8 N -0.91 -52.31 11.30 21.45 0.24 -52.07 16 9 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 13 N -0.67 -27.59 5.56 -495.43 -2.75 -30.35 16 14 C 0.08 3.12 4.96 86.30 0.43 3.55 16 15 C -0.08 -2.41 3.27 -9.41 -0.03 -2.44 16 16 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 17 C -0.12 -3.07 6.24 31.78 0.20 -2.88 16 18 C 0.04 0.99 6.21 86.65 0.54 1.53 16 19 N -0.54 -12.76 5.16 -885.53 -4.57 -17.33 16 20 C 0.04 0.82 5.26 86.30 0.45 1.27 16 21 C -0.14 -2.25 9.94 71.98 0.72 -1.54 16 22 C 0.05 1.32 6.15 86.78 0.53 1.86 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.06 2.23 7.88 -2.39 -0.02 2.21 16 25 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.06 3.23 5.97 -2.39 -0.01 3.21 16 27 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 28 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 29 H 0.33 13.34 8.45 -89.70 -0.76 12.58 16 30 H 0.05 1.81 7.89 -2.39 -0.02 1.79 16 31 H 0.01 0.39 8.11 -2.39 -0.02 0.37 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.05 1.57 8.01 -2.39 -0.02 1.55 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.25 6.91 -2.39 -0.02 1.24 16 36 H 0.07 1.41 8.07 -2.39 -0.02 1.39 16 37 H 0.03 0.63 7.96 -2.39 -0.02 0.61 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.05 0.87 7.14 -2.39 -0.02 0.85 16 40 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.04 1.13 7.70 -2.39 -0.02 1.11 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -57.31 326.94 -0.40 -57.71 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.20 Total: 21.75 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 4.46 Total: -25.18 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -7.08 Total: -99.75 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -57.31 -0.40 -57.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037484333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.400 kcal (2) G-P(sol) polarization free energy of solvation -57.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds