Wall clock time and date at job start Mon Mar 30 2020 03:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46926 * 2 1 4 4 H 1.09001 * 109.47224 * 55.09880 * 3 2 1 5 5 C 1.50703 * 109.46958 * 175.09369 * 3 2 1 6 6 H 1.08007 * 119.99990 * 120.00131 * 5 3 2 7 7 C 1.37873 * 120.00305 * 300.00411 * 5 3 2 8 8 N 1.31516 * 119.99816 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00193 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47033 * 90.00015 * 9 7 5 11 11 H 1.48503 * 109.47101 * 209.99732 * 9 7 5 12 12 H 1.48495 * 109.47177 * 329.99978 * 9 7 5 13 13 N 1.46901 * 109.47456 * 295.09720 * 3 2 1 14 14 C 1.46895 * 111.00172 * 154.23106 * 13 3 2 15 15 C 1.53001 * 109.47115 * 185.21204 * 14 13 3 16 16 H 1.09001 * 110.62653 * 308.09952 * 15 14 13 17 17 C 1.55130 * 110.70676 * 71.39922 * 15 14 13 18 18 C 1.54912 * 101.65559 * 154.03573 * 17 15 14 19 19 N 1.47841 * 104.79242 * 322.92921 * 18 17 15 20 20 C 1.46898 * 110.99772 * 146.36281 * 19 18 17 21 21 C 1.53002 * 109.47466 * 49.15679 * 20 19 18 22 22 C 1.47438 * 108.56947 * 24.09491 * 19 18 17 23 23 H 1.09000 * 109.47127 * 180.20726 * 1 2 3 24 24 H 1.09002 * 109.47001 * 300.20872 * 1 2 3 25 25 H 1.09007 * 109.47008 * 60.20788 * 1 2 3 26 26 H 1.08997 * 109.47041 * 120.00170 * 2 1 3 27 27 H 1.09005 * 109.46986 * 240.00415 * 2 1 3 28 28 H 0.97007 * 120.00172 * 179.97438 * 8 7 5 29 29 H 1.00908 * 110.99492 * 278.17942 * 13 3 2 30 30 H 1.09000 * 109.47232 * 305.21184 * 14 13 3 31 31 H 1.09002 * 109.47370 * 65.21254 * 14 13 3 32 32 H 1.09004 * 110.99016 * 272.12923 * 17 15 14 33 33 H 1.09005 * 110.99394 * 35.94353 * 17 15 14 34 34 H 1.09002 * 110.37192 * 204.09633 * 18 17 15 35 35 H 1.09001 * 110.36957 * 81.75831 * 18 17 15 36 36 H 1.09006 * 109.47445 * 169.15652 * 20 19 18 37 37 H 1.08999 * 109.47500 * 289.15334 * 20 19 18 38 38 H 1.08999 * 109.47042 * 59.99375 * 21 20 19 39 39 H 1.08996 * 109.47640 * 180.02562 * 21 20 19 40 40 H 1.09006 * 109.46766 * 300.00388 * 21 20 19 41 41 H 1.08994 * 109.89239 * 239.60030 * 22 19 18 42 42 H 1.09004 * 109.89022 * 118.41684 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9811 0.8428 5 6 3.5421 1.4442 0.1215 6 1 4.1462 1.8893 -0.6553 7 6 4.1452 0.8777 1.2243 8 7 3.4096 0.3362 2.1705 9 14 6.0072 0.8792 1.3746 10 1 6.4461 2.1118 2.0772 11 1 6.4425 -0.3123 2.1467 12 1 6.6131 0.8395 0.0195 13 7 1.6493 2.1000 -1.2542 14 6 1.5531 3.5552 -1.0780 15 6 1.0204 4.1905 -2.3638 16 1 1.6043 3.8635 -3.2242 17 6 -0.4825 3.8586 -2.5579 18 6 -0.9585 5.0548 -3.4195 19 7 -0.2082 6.2173 -2.8987 20 6 0.1004 7.1693 -3.9741 21 6 -1.1688 7.4606 -4.7773 22 6 1.0251 5.7299 -2.2545 23 1 -0.3633 -1.0277 0.0037 24 1 -0.3633 0.5171 0.8881 25 1 -0.3633 0.5106 -0.8919 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 3.8339 -0.0628 2.9463 29 1 2.2894 1.8676 -1.9989 30 1 0.8741 3.7773 -0.2547 31 1 2.5400 3.9603 -0.8544 32 1 -0.6086 2.9173 -3.0929 33 1 -1.0040 3.8348 -1.6009 34 1 -2.0305 5.2086 -3.2960 35 1 -0.7168 4.8863 -4.4690 36 1 0.4776 8.0961 -3.5418 37 1 0.8566 6.7414 -4.6322 38 1 -1.9250 7.8885 -4.1192 39 1 -0.9397 8.1666 -5.5755 40 1 -1.5459 6.5338 -5.2096 41 1 1.0382 6.0271 -1.2059 42 1 1.8969 6.1354 -2.7679 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037484334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:47 Heat of formation + Delta-G solvation = -14.082047 kcal Electronic energy + Delta-G solvation = -17844.170710 eV Core-core repulsion = 15244.171903 eV Total energy + Delta-G solvation = -2599.998807 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.14287 -36.20825 -33.89026 -32.02597 -30.96631 -29.20649 -28.63024 -26.18206 -23.59652 -23.04283 -22.17326 -20.32384 -20.05872 -19.23417 -16.64844 -15.92953 -15.60472 -14.88634 -14.63855 -13.94710 -13.73126 -13.57442 -13.22566 -12.81966 -12.73760 -12.45275 -12.09948 -11.59047 -11.48926 -11.28104 -11.17661 -11.11721 -11.05285 -10.99126 -10.68627 -10.63924 -10.45577 -10.30013 -10.02855 -9.56654 -9.40331 -9.03361 -8.36934 -8.23522 -7.20900 -5.98692 -4.11851 3.26560 3.33955 3.36492 4.04244 4.39628 4.75036 4.92984 5.00877 5.13184 5.18172 5.27482 5.33968 5.45300 5.59008 5.67076 5.74333 5.81692 5.87165 5.98543 6.04757 6.09647 6.23800 6.34700 6.40413 6.45599 6.53628 6.63160 6.73215 6.74929 7.04689 7.15137 7.16401 7.20159 7.46475 7.61441 7.78925 8.11125 8.17028 8.35773 8.68735 9.01499 9.55767 11.01192 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031842 B = 0.005105 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.136713 B = 5483.538580 C = 6169.750834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.687 5.687 14 C 0.080 3.920 15 C -0.103 4.103 16 H 0.068 0.932 17 C -0.109 4.109 18 C 0.039 3.961 19 N -0.531 5.531 20 C 0.045 3.955 21 C -0.153 4.153 22 C 0.046 3.954 23 H 0.023 0.977 24 H 0.035 0.965 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.325 0.675 30 H 0.062 0.938 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.031 0.969 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.951 9.259 -10.423 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.316 5.316 14 C -0.051 4.051 15 C -0.123 4.123 16 H 0.086 0.914 17 C -0.147 4.147 18 C -0.089 4.089 19 N -0.256 5.256 20 C -0.083 4.083 21 C -0.211 4.211 22 C -0.083 4.083 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.140 0.860 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.924 9.337 -9.776 15.670 hybrid contribution 2.647 -0.153 -0.373 2.678 sum -5.277 9.185 -10.148 14.669 Atomic orbital electron populations 1.21697 0.99019 0.98269 1.00404 1.21485 0.92084 0.99275 1.01545 1.19131 0.92690 0.91215 0.86263 0.95100 1.21874 0.92837 1.38136 1.05572 0.92977 1.24930 0.97877 0.95003 0.95712 1.69882 1.34795 1.38223 1.09409 0.86667 0.86140 0.77535 0.78056 1.20771 1.21148 1.20055 1.60872 1.54823 1.06018 1.09866 1.21706 0.98575 0.90077 0.94749 1.22382 0.96809 0.93717 0.99372 0.91405 1.22608 0.95019 0.96836 1.00195 1.23110 0.98679 0.90029 0.97073 1.63685 1.19889 1.14273 1.27756 1.22258 0.96869 0.96815 0.92339 1.21883 0.98028 1.01629 0.99558 1.22875 0.90529 0.94566 1.00286 0.95756 0.94543 0.93279 0.89271 0.95213 0.92899 0.85962 0.91918 0.95605 0.90666 0.90716 0.90753 0.93985 0.91011 0.95078 0.91912 0.92509 0.92498 0.90287 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.80 37.16 0.36 -2.46 16 2 C -0.11 -2.52 5.45 -26.73 -0.15 -2.67 16 3 C 0.21 5.29 1.98 -68.86 -0.14 5.15 16 4 H 0.03 0.85 7.70 -51.93 -0.40 0.45 16 5 C -0.54 -14.66 8.47 -34.44 -0.29 -14.95 16 6 H 0.05 1.40 7.73 -52.48 -0.41 0.99 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -25.03 11.29 55.43 0.63 -24.41 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.69 -14.08 5.59 -107.95 -0.60 -14.68 16 14 C 0.08 1.46 4.80 -3.83 -0.02 1.44 16 15 C -0.10 -1.53 3.15 -88.80 -0.28 -1.81 16 16 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 17 C -0.11 -1.51 6.44 -24.60 -0.16 -1.67 16 18 C 0.04 0.47 5.30 -2.30 -0.01 0.46 16 19 N -0.53 -6.84 5.31 -231.25 -1.23 -8.07 16 20 C 0.05 0.49 5.54 -3.82 -0.02 0.47 16 21 C -0.15 -1.39 9.58 37.16 0.36 -1.04 16 22 C 0.05 0.63 6.47 -2.84 -0.02 0.61 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.97 7.76 -51.93 -0.40 0.56 16 26 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.32 6.65 8.46 -39.29 -0.33 6.32 16 30 H 0.06 1.21 7.78 -51.93 -0.40 0.80 16 31 H 0.03 0.51 8.11 -51.93 -0.42 0.09 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.12 7.94 -51.93 -0.41 0.71 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.49 7.02 -51.93 -0.36 0.12 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.03 0.34 7.96 -51.93 -0.41 -0.07 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.51 6.48 -51.93 -0.34 0.18 16 41 H 0.08 1.14 7.82 -51.93 -0.41 0.73 16 42 H 0.05 0.65 7.49 -51.93 -0.39 0.26 16 LS Contribution 325.12 15.07 4.90 4.90 Total: -1.00 -27.18 325.12 -9.72 -36.90 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.94 Total: 3.97 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -0.46 Total: -14.72 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -1.21 Total: -47.16 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.18 -9.72 -36.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037484334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.813 kcal (2) G-P(sol) polarization free energy of solvation -27.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds