Wall clock time and date at job start Mon Mar 30 2020 03:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.47175 * 2 1 4 4 H 1.09003 * 109.47137 * 304.24797 * 3 2 1 5 5 C 1.50693 * 109.47238 * 184.24369 * 3 2 1 6 6 H 1.07995 * 120.00200 * 245.41209 * 5 3 2 7 7 C 1.37883 * 120.00110 * 65.40730 * 5 3 2 8 8 N 1.31517 * 120.00275 * 193.88417 * 7 5 3 9 9 Si 1.86799 * 119.99764 * 13.88376 * 7 5 3 10 10 H 1.48494 * 109.47337 * 84.19127 * 9 7 5 11 11 H 1.48500 * 109.47002 * 204.18972 * 9 7 5 12 12 H 1.48498 * 109.47218 * 324.18869 * 9 7 5 13 13 N 1.46900 * 109.46993 * 64.24239 * 3 2 1 14 14 C 1.46897 * 110.99965 * 262.12082 * 13 3 2 15 15 C 1.53005 * 109.47062 * 175.26380 * 14 13 3 16 16 H 1.09001 * 110.76555 * 308.20287 * 15 14 13 17 17 C 1.55141 * 110.70202 * 71.40331 * 15 14 13 18 18 C 1.54908 * 101.65440 * 154.03820 * 17 15 14 19 19 N 1.47843 * 104.79213 * 322.92783 * 18 17 15 20 20 C 1.46903 * 111.00079 * 146.36464 * 19 18 17 21 21 C 1.53004 * 109.46954 * 49.15209 * 20 19 18 22 22 C 1.47441 * 108.56900 * 24.09601 * 19 18 17 23 23 H 1.08996 * 109.46872 * 297.40049 * 1 2 3 24 24 H 1.09007 * 109.46818 * 57.39690 * 1 2 3 25 25 H 1.09000 * 109.47072 * 177.39406 * 1 2 3 26 26 H 1.09002 * 109.46752 * 240.00205 * 2 1 3 27 27 H 1.08998 * 109.46741 * 120.00314 * 2 1 3 28 28 H 0.96994 * 119.99893 * 180.02562 * 8 7 5 29 29 H 1.00901 * 111.00102 * 26.07646 * 13 3 2 30 30 H 1.08998 * 109.47189 * 55.26701 * 14 13 3 31 31 H 1.08993 * 109.47227 * 295.26328 * 14 13 3 32 32 H 1.08999 * 110.99446 * 35.93932 * 17 15 14 33 33 H 1.09003 * 111.01988 * 272.14084 * 17 15 14 34 34 H 1.08997 * 110.37360 * 204.09668 * 18 17 15 35 35 H 1.09003 * 110.37481 * 81.75624 * 18 17 15 36 36 H 1.08997 * 109.47391 * 169.15910 * 20 19 18 37 37 H 1.09006 * 109.46751 * 289.15964 * 20 19 18 38 38 H 1.08997 * 109.47644 * 300.00546 * 21 20 19 39 39 H 1.09006 * 109.46775 * 60.00769 * 21 20 19 40 40 H 1.08999 * 109.46760 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.89100 * 118.41697 * 22 19 18 42 42 H 1.09002 * 109.89066 * 239.60189 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6159 1.9779 -0.8495 5 6 3.5434 1.4438 -0.1051 6 1 4.1417 1.8123 0.7149 7 6 4.1549 0.9744 -1.2483 8 7 5.4448 0.7177 -1.2460 9 14 3.1514 0.7031 -2.8002 10 1 3.0301 1.9840 -3.5416 11 1 3.8281 -0.3030 -3.6577 12 1 1.7982 0.2123 -2.4352 13 7 1.6359 2.1048 1.2474 14 6 0.4223 2.9080 1.0476 15 6 -0.0340 3.4850 2.3892 16 1 -0.1142 2.6995 3.1406 17 6 0.9335 4.6012 2.8636 18 6 0.0064 5.4584 3.7610 19 7 -1.3043 5.4385 3.0773 20 6 -2.4055 5.4681 4.0492 21 6 -2.1628 6.5899 5.0609 22 6 -1.3759 4.2310 2.2343 23 1 -0.3633 0.4729 0.9123 24 1 -0.3633 0.5538 -0.8658 25 1 -0.3633 -1.0266 -0.0467 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.8751 0.3879 -2.0503 29 1 1.5065 1.4322 1.9884 30 1 -0.3665 2.2783 0.6359 31 1 0.6355 3.7225 0.3555 32 1 1.3047 5.1813 2.0188 33 1 1.7588 4.1840 3.4408 34 1 0.3829 6.4789 3.8301 35 1 -0.0765 5.0155 4.7535 36 1 -3.3459 5.6462 3.5276 37 1 -2.4550 4.5124 4.5713 38 1 -1.2225 6.4118 5.5825 39 1 -2.1134 7.5455 4.5388 40 1 -2.9801 6.6121 5.7818 41 1 -2.1950 3.5938 2.5679 42 1 -1.5245 4.5144 1.1923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037484335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:49 Heat of formation + Delta-G solvation = -23.133631 kcal Electronic energy + Delta-G solvation = -17933.249301 eV Core-core repulsion = 15332.857988 eV Total energy + Delta-G solvation = -2600.391313 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.30533 -38.38571 -35.20925 -34.09952 -32.37712 -30.36443 -30.11157 -28.59815 -25.15002 -24.01134 -23.73625 -21.88969 -21.32584 -20.96261 -18.80843 -17.01998 -16.82965 -16.76644 -16.08533 -15.84522 -15.44823 -14.86118 -14.68474 -14.34523 -14.21370 -13.86979 -13.50823 -13.39071 -13.32425 -12.73345 -12.69990 -12.54044 -12.38913 -12.35104 -12.19843 -11.94306 -11.82769 -11.71493 -11.64565 -11.45621 -11.24395 -11.11933 -10.52283 -9.21745 -8.87048 -8.25083 -6.22210 1.34652 1.38010 1.45851 2.37538 3.07155 3.08315 3.41793 3.77658 3.88397 4.08561 4.24368 4.30089 4.32934 4.39616 4.40026 4.47749 4.48782 4.63162 4.63877 4.64932 4.81295 4.81708 4.90603 4.99860 5.00257 5.08052 5.11893 5.19505 5.21023 5.25206 5.31358 5.32397 5.46110 5.53912 5.75800 6.02992 6.10065 6.21129 6.76288 6.83590 6.86081 7.41298 8.92503 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040167 B = 0.005022 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.923520 B = 5574.541582 C = 5889.679211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.152 4.152 3 C 0.199 3.801 4 H 0.020 0.980 5 C -0.504 4.504 6 H 0.030 0.970 7 C 0.012 3.988 8 N -0.949 5.949 9 Si 0.925 3.075 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.222 1.222 13 N -0.681 5.681 14 C 0.070 3.930 15 C -0.098 4.098 16 H 0.077 0.923 17 C -0.113 4.113 18 C 0.047 3.953 19 N -0.543 5.543 20 C 0.043 3.957 21 C -0.151 4.151 22 C 0.052 3.948 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.263 0.737 29 H 0.333 0.667 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.035 0.965 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.534 6.268 9.323 21.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.192 4.192 3 C 0.089 3.911 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.049 0.951 7 C -0.185 4.185 8 N -0.590 5.590 9 Si 0.749 3.251 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.145 1.145 13 N -0.312 5.312 14 C -0.059 4.059 15 C -0.118 4.118 16 H 0.095 0.905 17 C -0.151 4.151 18 C -0.080 4.080 19 N -0.268 5.268 20 C -0.084 4.084 21 C -0.208 4.208 22 C -0.076 4.076 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.151 0.849 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.048 7.201 8.840 21.347 hybrid contribution -0.014 -1.561 -0.504 1.641 sum -18.062 5.640 8.336 20.676 Atomic orbital electron populations 1.21890 0.95037 1.01856 1.01536 1.22533 0.95834 0.99566 1.01233 1.19295 0.93100 0.89795 0.88886 0.96256 1.21319 0.91820 1.39782 1.01359 0.95121 1.25771 0.95747 0.94818 1.02163 1.70112 1.12484 1.46896 1.29488 0.86271 0.81423 0.78043 0.79342 1.20419 1.21662 1.14518 1.60424 1.33901 1.28930 1.07907 1.22065 0.90862 0.96612 0.96399 1.22309 0.95052 0.97590 0.96805 0.90469 1.22586 0.97353 0.95981 0.99183 1.23035 0.88680 1.00280 0.96004 1.63687 1.02965 1.38359 1.21816 1.22349 0.94553 0.98281 0.93245 1.21861 1.02243 0.98376 0.98337 1.22793 0.96207 0.89900 0.98748 0.91834 0.93321 0.91922 0.93371 0.92910 0.92820 0.84939 0.94195 0.93031 0.92382 0.91332 0.90232 0.92858 0.90345 0.94683 0.92623 0.92350 0.90823 0.91609 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 8.66 71.99 0.62 -3.83 16 2 C -0.15 -6.11 4.62 30.60 0.14 -5.97 16 3 C 0.20 9.05 1.79 44.17 0.08 9.12 16 4 H 0.02 0.91 6.42 -2.39 -0.02 0.89 16 5 C -0.50 -29.16 9.28 25.60 0.24 -28.92 16 6 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 7 C 0.01 0.69 5.36 84.66 0.45 1.14 16 8 N -0.95 -60.26 13.96 21.45 0.30 -59.96 16 9 Si 0.92 43.75 25.87 68.60 1.77 45.52 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.22 -9.33 5.35 99.48 0.53 -8.80 16 13 N -0.68 -26.50 6.01 -495.46 -2.98 -29.48 16 14 C 0.07 2.20 4.31 86.31 0.37 2.57 16 15 C -0.10 -2.51 3.06 -9.61 -0.03 -2.54 16 16 H 0.08 1.88 8.11 -2.39 -0.02 1.86 16 17 C -0.11 -3.05 6.44 31.98 0.21 -2.84 16 18 C 0.05 1.05 5.30 86.77 0.46 1.51 16 19 N -0.54 -11.98 5.31 -885.53 -4.71 -16.68 16 20 C 0.04 0.75 5.54 86.30 0.48 1.23 16 21 C -0.15 -2.22 9.58 71.98 0.69 -1.53 16 22 C 0.05 1.16 6.47 86.65 0.56 1.72 16 23 H 0.06 1.73 6.19 -2.39 -0.01 1.71 16 24 H 0.05 1.46 8.12 -2.38 -0.02 1.44 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 26 H 0.05 2.07 4.73 -2.39 -0.01 2.06 16 27 H 0.05 2.13 8.04 -2.39 -0.02 2.11 16 28 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.33 12.01 8.04 -89.69 -0.72 11.29 16 30 H 0.04 1.16 5.55 -2.39 -0.01 1.14 16 31 H 0.05 1.79 8.00 -2.39 -0.02 1.77 16 32 H 0.06 1.78 7.94 -2.39 -0.02 1.76 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.08 7.02 -2.39 -0.02 1.06 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.03 0.59 7.96 -2.38 -0.02 0.57 16 38 H 0.05 0.84 6.48 -2.39 -0.02 0.82 16 39 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 1.27 7.49 -2.39 -0.02 1.25 16 42 H 0.07 1.71 7.82 -2.39 -0.02 1.69 16 Total: -1.00 -65.20 314.26 -1.26 -66.46 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.08 Total: 22.46 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 4.27 Total: -28.33 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -7.39 Total: -106.12 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.77 Total: 45.52 kcal Total: -65.20 -1.26 -66.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037484335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.328 kcal (2) G-P(sol) polarization free energy of solvation -65.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds