Wall clock time and date at job start Mon Mar 30 2020 03:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47267 * 2 1 4 4 H 1.09003 * 109.46979 * 305.05317 * 3 2 1 5 5 C 1.50694 * 109.47201 * 65.05131 * 3 2 1 6 6 H 1.08004 * 119.99915 * 84.68208 * 5 3 2 7 7 C 1.37882 * 120.00237 * 264.68749 * 5 3 2 8 8 N 1.31512 * 119.99972 * 352.63029 * 7 5 3 9 9 Si 1.86797 * 119.99984 * 172.63709 * 7 5 3 10 10 H 1.48500 * 109.47323 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47396 * 119.99363 * 9 7 5 12 12 H 1.48502 * 109.47071 * 239.99676 * 9 7 5 13 13 N 1.46894 * 109.46983 * 185.05420 * 3 2 1 14 14 C 1.46847 * 111.00054 * 71.68832 * 13 3 2 15 15 C 1.53038 * 109.52544 * 174.16009 * 14 13 3 16 16 C 1.53122 * 109.27985 * 59.17438 * 15 14 13 17 17 C 1.53126 * 109.15972 * 302.35156 * 16 15 14 18 18 H 1.09007 * 109.49902 * 297.70983 * 17 16 15 19 19 C 1.53001 * 109.50101 * 177.63458 * 17 16 15 20 20 N 1.46903 * 109.47451 * 64.99811 * 19 17 16 21 21 C 1.46892 * 111.00295 * 180.02562 * 20 19 17 22 22 C 1.46843 * 111.00077 * 307.47428 * 13 3 2 23 23 H 1.09009 * 109.46912 * 55.43634 * 1 2 3 24 24 H 1.08998 * 109.47239 * 295.43973 * 1 2 3 25 25 H 1.08998 * 109.47077 * 175.43294 * 1 2 3 26 26 H 1.08997 * 109.46983 * 119.99881 * 2 1 3 27 27 H 1.09000 * 109.47023 * 240.00233 * 2 1 3 28 28 H 0.96997 * 119.99967 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.45924 * 294.17272 * 14 13 3 30 30 H 1.08997 * 109.46882 * 54.15253 * 14 13 3 31 31 H 1.08995 * 109.50676 * 179.11602 * 15 14 13 32 32 H 1.09004 * 109.50256 * 299.23559 * 15 14 13 33 33 H 1.09004 * 109.52243 * 62.25195 * 16 15 14 34 34 H 1.08996 * 109.52273 * 182.38120 * 16 15 14 35 35 H 1.09000 * 109.46893 * 184.99367 * 19 17 16 36 36 H 1.08998 * 109.46994 * 304.99431 * 19 17 16 37 37 H 1.00899 * 110.99711 * 56.04273 * 20 19 17 38 38 H 1.09011 * 109.46842 * 300.00008 * 21 20 19 39 39 H 1.08996 * 109.47448 * 59.99526 * 21 20 19 40 40 H 1.08998 * 109.47444 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.46479 * 305.85324 * 22 13 3 42 42 H 1.08995 * 109.46063 * 65.82798 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6047 1.9818 -0.8413 5 6 1.6425 2.1159 1.2882 6 1 2.2574 2.0027 2.1688 7 6 0.4937 2.8764 1.3426 8 7 -0.1769 3.1344 0.2412 9 14 -0.1100 3.5405 2.9809 10 1 0.8153 3.1116 4.0602 11 1 -0.1551 5.0238 2.9275 12 1 -1.4706 3.0135 3.2575 13 7 3.5039 1.4443 -0.1220 14 6 3.9197 1.0525 -1.4748 15 6 5.4366 1.2055 -1.6081 16 6 6.1273 0.3218 -0.5656 17 6 5.6404 0.7180 0.8310 18 1 5.9203 1.7518 1.0343 19 6 6.2811 -0.1992 1.8746 20 7 7.7336 0.0196 1.8932 21 6 8.3839 -0.8467 2.8854 22 6 4.1177 0.5792 0.8935 23 1 -0.3633 0.5831 -0.8464 24 1 -0.3633 0.4414 0.9280 25 1 -0.3633 -1.0244 -0.0818 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 -0.9849 3.6698 0.2794 29 1 3.6424 0.0137 -1.6534 30 1 3.4248 1.6914 -2.2062 31 1 5.7468 0.8998 -2.6072 32 1 5.7132 2.2468 -1.4432 33 1 5.8820 -0.7234 -0.7540 34 1 7.2067 0.4598 -0.6289 35 1 5.8674 0.0245 2.8579 36 1 6.0735 -1.2388 1.6210 37 1 7.9509 0.9902 2.0625 38 1 7.9848 -0.6279 3.8759 39 1 8.1909 -1.8906 2.6384 40 1 9.4585 -0.6641 2.8786 41 1 3.7664 0.8743 1.8823 42 1 3.8394 -0.4574 0.7038 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040601541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:35 Heat of formation + Delta-G solvation = -13.822211 kcal Electronic energy + Delta-G solvation = -18458.537537 eV Core-core repulsion = 15858.549997 eV Total energy + Delta-G solvation = -2599.987540 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.81739 -36.25657 -34.34423 -31.89200 -30.94341 -30.36830 -26.38559 -26.29487 -23.91244 -23.27102 -22.31087 -21.08573 -19.90355 -18.46695 -16.23436 -15.88634 -15.06740 -14.67041 -14.36986 -14.17952 -13.88000 -13.46430 -13.25154 -13.13498 -12.71970 -12.53840 -12.11339 -11.80437 -11.63138 -11.41789 -11.04341 -10.88776 -10.76519 -10.64517 -10.57304 -10.28254 -10.13581 -9.96536 -9.79165 -9.60332 -9.21505 -8.88042 -8.41269 -8.34707 -6.98349 -5.98521 -3.97940 3.30626 3.39395 3.42800 4.27264 4.44700 4.91506 5.18349 5.26883 5.31756 5.43117 5.44594 5.52565 5.68386 5.78714 5.83876 5.93680 6.00883 6.07764 6.24074 6.29842 6.32008 6.35726 6.43442 6.54822 6.61085 6.65332 6.69136 6.83374 6.88958 6.96879 7.03472 7.20738 7.30911 7.37570 7.58539 7.61689 7.89337 8.16593 8.49285 8.70267 9.08540 9.63502 11.10289 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023738 B = 0.006871 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.273073 B = 4074.296361 C = 4649.874213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.139 4.139 3 C 0.201 3.799 4 H 0.071 0.929 5 C -0.492 4.492 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.889 5.889 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.526 5.526 14 C 0.053 3.947 15 C -0.117 4.117 16 C -0.100 4.100 17 C -0.084 4.084 18 H 0.073 0.927 19 C 0.063 3.937 20 N -0.693 5.693 21 C 0.028 3.972 22 C 0.069 3.931 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.014 0.986 26 H 0.040 0.960 27 H 0.021 0.979 28 H 0.259 0.741 29 H 0.019 0.981 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.030 0.970 36 H 0.068 0.932 37 H 0.340 0.660 38 H 0.019 0.981 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.185 -6.179 0.840 12.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.178 4.178 3 C 0.095 3.905 4 H 0.089 0.911 5 C -0.530 4.530 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.528 5.528 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.249 5.249 14 C -0.076 4.076 15 C -0.155 4.155 16 C -0.138 4.138 17 C -0.103 4.103 18 H 0.091 0.909 19 C -0.066 4.066 20 N -0.324 5.324 21 C -0.122 4.122 22 C -0.060 4.060 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.033 0.967 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.158 0.842 38 H 0.037 0.963 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 11.304 -6.028 0.328 12.815 hybrid contribution -1.022 -0.069 1.607 1.906 sum 10.282 -6.097 1.936 12.109 Atomic orbital electron populations 1.21422 0.95995 0.97132 1.03185 1.22221 0.96780 1.01274 0.97567 1.19633 0.80674 0.90655 0.99547 0.91136 1.20976 1.06855 1.29801 0.95393 0.92667 1.24873 0.97133 0.95380 0.95982 1.69933 1.17653 1.39029 1.26162 0.86637 0.78641 0.78676 0.84611 1.19895 1.21126 1.21125 1.62424 1.11657 1.50294 1.00527 1.22041 0.94650 0.97776 0.93133 1.21611 0.95737 1.00414 0.97706 1.21456 0.99666 0.98532 0.94142 1.21234 0.95679 0.99079 0.94299 0.90862 1.22031 0.86549 1.00265 0.97785 1.60403 1.10193 1.10598 1.51179 1.22167 0.98953 0.98125 0.92945 1.21904 0.91700 0.94502 0.97872 0.92926 0.92069 0.96693 0.94115 0.96024 0.93104 0.96278 0.91756 0.92850 0.91654 0.93270 0.91750 0.95201 0.91401 0.84233 0.96267 0.91966 0.91783 0.90650 0.96158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.04 37.16 0.34 -2.36 16 2 C -0.14 -3.11 4.52 -26.73 -0.12 -3.23 16 3 C 0.20 4.92 1.96 -68.87 -0.13 4.79 16 4 H 0.07 1.96 7.03 -51.93 -0.36 1.59 16 5 C -0.49 -13.12 7.57 -34.44 -0.26 -13.38 16 6 H 0.06 1.49 6.41 -52.48 -0.34 1.15 16 7 C 0.07 1.85 4.33 -17.82 -0.08 1.77 16 8 N -0.89 -24.90 12.33 55.43 0.68 -24.22 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.53 -11.34 4.58 -228.09 -1.05 -12.39 16 14 C 0.05 0.99 5.16 -3.83 -0.02 0.97 16 15 C -0.12 -1.84 6.09 -26.65 -0.16 -2.00 16 16 C -0.10 -1.49 5.14 -26.60 -0.14 -1.63 16 17 C -0.08 -1.32 2.49 -90.54 -0.23 -1.54 16 18 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 19 C 0.06 0.86 5.08 -3.82 -0.02 0.84 16 20 N -0.69 -8.31 6.36 -121.13 -0.77 -9.09 16 21 C 0.03 0.28 10.70 60.06 0.64 0.92 16 22 C 0.07 1.33 3.80 -3.84 -0.01 1.31 16 23 H 0.05 1.25 8.14 -51.92 -0.42 0.82 16 24 H 0.06 1.49 6.83 -51.93 -0.35 1.14 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.90 6.76 -51.93 -0.35 0.55 16 27 H 0.02 0.45 6.69 -51.93 -0.35 0.11 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.02 0.36 6.83 -51.93 -0.35 0.01 16 30 H 0.06 1.25 8.00 -51.93 -0.42 0.84 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.90 7.83 -51.93 -0.41 0.50 16 35 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.34 3.81 8.82 -39.29 -0.35 3.47 16 38 H 0.02 0.19 8.14 -51.92 -0.42 -0.24 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 1.57 6.39 -51.93 -0.33 1.24 16 42 H 0.02 0.39 6.68 -51.93 -0.35 0.05 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -27.29 316.15 -9.32 -36.62 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.74 Total: 1.74 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -0.19 Total: -13.54 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -1.13 Total: -45.69 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.29 -9.32 -36.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040601541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.793 kcal (2) G-P(sol) polarization free energy of solvation -27.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds