Wall clock time and date at job start Mon Mar 30 2020 03:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46871 * 2 1 4 4 H 1.09004 * 109.47096 * 51.43656 * 3 2 1 5 5 C 1.50698 * 109.47077 * 291.43253 * 3 2 1 6 6 H 1.07997 * 120.00175 * 244.56041 * 5 3 2 7 7 C 1.37877 * 119.99662 * 64.56985 * 5 3 2 8 8 N 1.31508 * 120.00713 * 22.14465 * 7 5 3 9 9 Si 1.86804 * 119.99626 * 202.14542 * 7 5 3 10 10 H 1.48503 * 109.47200 * 89.99423 * 9 7 5 11 11 H 1.48501 * 109.47292 * 209.99703 * 9 7 5 12 12 H 1.48502 * 109.46947 * 330.00122 * 9 7 5 13 13 N 1.46904 * 109.46575 * 171.43199 * 3 2 1 14 14 C 1.46840 * 110.99743 * 57.22996 * 13 3 2 15 15 C 1.53042 * 109.52087 * 174.15582 * 14 13 3 16 16 C 1.53119 * 109.27883 * 59.17666 * 15 14 13 17 17 C 1.53121 * 109.16017 * 302.34815 * 16 15 14 18 18 H 1.09001 * 109.50154 * 297.71013 * 17 16 15 19 19 C 1.53000 * 109.50115 * 177.63641 * 17 16 15 20 20 N 1.46896 * 109.47742 * 64.99882 * 19 17 16 21 21 C 1.46895 * 111.00326 * 179.97438 * 20 19 17 22 22 C 1.46839 * 111.00259 * 293.01451 * 13 3 2 23 23 H 1.09001 * 109.46942 * 186.27730 * 1 2 3 24 24 H 1.09006 * 109.47094 * 66.28595 * 1 2 3 25 25 H 1.08994 * 109.47617 * 306.28032 * 1 2 3 26 26 H 1.08998 * 109.47163 * 119.99803 * 2 1 3 27 27 H 1.08998 * 109.47284 * 240.00549 * 2 1 3 28 28 H 0.96994 * 120.00554 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.46531 * 294.17010 * 14 13 3 30 30 H 1.08997 * 109.46896 * 54.15374 * 14 13 3 31 31 H 1.09003 * 109.50559 * 179.11657 * 15 14 13 32 32 H 1.09006 * 109.50593 * 299.23766 * 15 14 13 33 33 H 1.09001 * 109.52220 * 62.25484 * 16 15 14 34 34 H 1.09000 * 109.52584 * 182.37301 * 16 15 14 35 35 H 1.09000 * 109.47024 * 185.00292 * 19 17 16 36 36 H 1.09001 * 109.47038 * 304.99615 * 19 17 16 37 37 H 1.00899 * 110.99680 * 56.04105 * 20 19 17 38 38 H 1.09000 * 109.47074 * 60.00017 * 21 20 19 39 39 H 1.08999 * 109.47036 * 179.97438 * 21 20 19 40 40 H 1.08995 * 109.46897 * 299.99780 * 21 20 19 41 41 H 1.09003 * 109.46344 * 305.85647 * 22 13 3 42 42 H 1.09002 * 109.46223 * 65.82501 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5570 1.9987 0.8036 5 6 1.7179 2.0892 -1.3225 6 1 2.5161 2.3997 -1.9804 7 6 0.4041 2.2846 -1.6925 8 7 -0.5379 2.3275 -0.7759 9 14 -0.0378 2.4883 -3.4961 10 1 -0.3286 1.1577 -4.0879 11 1 -1.2364 3.3565 -3.6171 12 1 1.1005 3.1125 -4.2171 13 7 3.4944 1.4476 0.2064 14 6 4.1746 0.6511 -0.8227 15 6 5.6898 0.7972 -0.6640 16 6 6.1002 0.3197 0.7318 17 6 5.3413 1.1326 1.7843 18 1 5.6155 2.1842 1.6993 19 6 5.7013 0.6223 3.1810 20 7 7.1236 0.8779 3.4444 21 6 7.5059 0.4004 4.7800 22 6 3.8363 0.9768 1.5545 23 1 -0.3633 -1.0215 0.1124 24 1 -0.3633 0.4133 -0.9409 25 1 -0.3634 0.6081 0.8284 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 -1.4621 2.4646 -1.0362 29 1 3.8974 -0.3972 -0.7128 30 1 3.8775 1.0037 -1.8104 31 1 6.1946 0.1934 -1.4182 32 1 5.9695 1.8435 -0.7875 33 1 5.8560 -0.7368 0.8417 34 1 7.1728 0.4613 0.8644 35 1 5.0953 1.1402 3.9244 36 1 5.5081 -0.4490 3.2373 37 1 7.3414 1.8570 3.3347 38 1 7.3252 -0.6724 4.8478 39 1 8.5637 0.6017 4.9488 40 1 6.9125 0.9172 5.5341 41 1 3.2933 1.5659 2.2936 42 1 3.5606 -0.0731 1.6534 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040601542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:38 Heat of formation + Delta-G solvation = 2.894380 kcal Electronic energy + Delta-G solvation = -18454.077374 eV Core-core repulsion = 15854.814720 eV Total energy + Delta-G solvation = -2599.262654 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.86414 -36.37853 -34.52701 -32.06022 -30.91347 -29.99526 -26.93357 -26.03477 -24.01167 -22.99343 -22.14844 -21.29625 -19.94349 -18.52326 -16.12388 -15.90322 -15.12957 -14.80216 -14.36050 -14.17218 -13.83097 -13.56684 -13.35223 -13.14826 -12.75403 -12.47430 -12.10114 -11.84089 -11.62634 -11.32795 -11.25040 -10.82109 -10.71716 -10.61119 -10.50206 -10.14180 -10.11008 -10.03960 -9.78183 -9.57594 -9.32024 -9.06500 -8.46646 -7.78121 -7.03665 -6.06903 -3.91526 3.31945 3.40010 3.43168 4.20583 4.44484 4.89075 5.17391 5.21263 5.24141 5.31812 5.39795 5.45044 5.68371 5.74688 5.76049 5.93129 5.95915 6.03843 6.19840 6.32800 6.36558 6.41912 6.48963 6.57230 6.58423 6.67922 6.79066 6.86875 6.91653 6.97837 7.10844 7.31539 7.33088 7.42667 7.66168 7.88045 8.03641 8.15410 8.36405 8.67429 9.05397 9.60944 10.99957 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039075 B = 0.005820 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.396420 B = 4810.099510 C = 5140.737550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.135 4.135 3 C 0.211 3.789 4 H 0.047 0.953 5 C -0.507 4.507 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.869 5.869 9 Si 0.877 3.123 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.273 1.273 13 N -0.528 5.528 14 C 0.062 3.938 15 C -0.120 4.120 16 C -0.101 4.101 17 C -0.081 4.081 18 H 0.073 0.927 19 C 0.063 3.937 20 N -0.693 5.693 21 C 0.028 3.972 22 C 0.061 3.939 23 H -0.006 1.006 24 H 0.086 0.914 25 H 0.052 0.948 26 H 0.017 0.983 27 H 0.040 0.960 28 H 0.260 0.740 29 H 0.020 0.980 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.341 0.659 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.019 0.981 41 H 0.062 0.938 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.035 -3.867 6.437 13.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.174 4.174 3 C 0.105 3.895 4 H 0.065 0.935 5 C -0.545 4.545 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.507 5.507 9 Si 0.704 3.296 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.198 1.198 13 N -0.251 5.251 14 C -0.067 4.067 15 C -0.158 4.158 16 C -0.138 4.138 17 C -0.100 4.100 18 H 0.092 0.908 19 C -0.067 4.067 20 N -0.323 5.323 21 C -0.122 4.122 22 C -0.068 4.068 23 H 0.013 0.987 24 H 0.105 0.895 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.158 0.842 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.081 0.919 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 11.213 -3.915 6.106 13.354 hybrid contribution -1.137 -0.200 -0.220 1.175 sum 10.076 -4.115 5.887 12.374 Atomic orbital electron populations 1.22050 0.95182 0.95597 1.05477 1.22259 0.97459 1.00430 0.97294 1.19435 0.80679 0.91090 0.98300 0.93524 1.20991 0.91661 1.39717 1.02099 0.91803 1.24783 0.96582 0.95181 0.96907 1.70260 1.01128 1.47219 1.32119 0.86843 0.77989 0.77963 0.86773 1.20680 1.21494 1.19825 1.62193 1.11355 1.51842 0.99708 1.21958 0.92189 0.94971 0.97535 1.21672 0.96690 1.01225 0.96216 1.21461 0.99604 0.98511 0.94258 1.21178 0.95671 1.00217 0.92930 0.90832 1.22038 0.87166 1.00866 0.96592 1.60397 1.19554 1.24010 1.28356 1.22170 1.00271 1.00653 0.89102 1.21976 0.93834 0.97762 0.93261 0.98672 0.89527 0.92920 0.96478 0.94171 0.92992 0.96160 0.90115 0.92771 0.91753 0.93215 0.91726 0.95300 0.91318 0.84218 0.91938 0.91723 0.96260 0.91925 0.95802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.23 37.16 0.31 -2.71 16 2 C -0.13 -3.16 4.54 -26.73 -0.12 -3.28 16 3 C 0.21 5.22 1.94 -68.86 -0.13 5.09 16 4 H 0.05 1.29 7.89 -51.93 -0.41 0.88 16 5 C -0.51 -13.58 7.81 -34.44 -0.27 -13.85 16 6 H 0.06 1.74 6.82 -52.49 -0.36 1.39 16 7 C 0.07 1.80 3.73 -17.82 -0.07 1.74 16 8 N -0.87 -23.83 9.74 55.43 0.54 -23.29 16 9 Si 0.88 20.80 29.59 -169.99 -5.03 15.77 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 13 N -0.53 -11.28 4.62 -228.09 -1.05 -12.33 16 14 C 0.06 1.21 4.63 -3.84 -0.02 1.19 16 15 C -0.12 -1.93 6.09 -26.65 -0.16 -2.10 16 16 C -0.10 -1.48 5.14 -26.61 -0.14 -1.62 16 17 C -0.08 -1.21 2.49 -90.54 -0.23 -1.44 16 18 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 19 C 0.06 0.81 5.08 -3.83 -0.02 0.79 16 20 N -0.69 -7.88 6.36 -121.14 -0.77 -8.65 16 21 C 0.03 0.26 10.70 60.06 0.64 0.91 16 22 C 0.06 1.11 4.37 -3.84 -0.02 1.10 16 23 H -0.01 -0.13 8.14 -51.93 -0.42 -0.55 16 24 H 0.09 2.26 4.75 -51.93 -0.25 2.02 16 25 H 0.05 1.32 7.58 -51.93 -0.39 0.92 16 26 H 0.02 0.37 6.36 -51.93 -0.33 0.04 16 27 H 0.04 0.94 6.98 -51.93 -0.36 0.58 16 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.02 0.40 6.79 -51.93 -0.35 0.05 16 30 H 0.08 1.72 6.40 -51.93 -0.33 1.39 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.90 7.83 -51.93 -0.41 0.49 16 35 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.34 3.57 8.81 -39.29 -0.35 3.22 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 42 H 0.02 0.45 6.60 -51.93 -0.34 0.10 16 LS Contribution 310.99 15.07 4.69 4.69 Total: -1.00 -26.97 310.99 -9.51 -36.48 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.66 Total: 1.52 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -0.22 Total: -14.19 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -1.28 Total: -44.27 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.97 -9.51 -36.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040601542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.375 kcal (2) G-P(sol) polarization free energy of solvation -26.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds