Wall clock time and date at job start Mon Mar 30 2020 03:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46871 * 2 1 4 4 H 1.09004 * 109.47096 * 51.43656 * 3 2 1 5 5 C 1.50698 * 109.47077 * 291.43253 * 3 2 1 6 6 H 1.07997 * 120.00175 * 244.56041 * 5 3 2 7 7 C 1.37877 * 119.99662 * 64.56985 * 5 3 2 8 8 N 1.31508 * 120.00713 * 22.14465 * 7 5 3 9 9 Si 1.86804 * 119.99626 * 202.14542 * 7 5 3 10 10 H 1.48503 * 109.47200 * 89.99423 * 9 7 5 11 11 H 1.48501 * 109.47292 * 209.99703 * 9 7 5 12 12 H 1.48502 * 109.46947 * 330.00122 * 9 7 5 13 13 N 1.46904 * 109.46575 * 171.43199 * 3 2 1 14 14 C 1.46840 * 110.99743 * 57.22996 * 13 3 2 15 15 C 1.53042 * 109.52087 * 174.15582 * 14 13 3 16 16 C 1.53119 * 109.27883 * 59.17666 * 15 14 13 17 17 C 1.53121 * 109.16017 * 302.34815 * 16 15 14 18 18 H 1.09001 * 109.50154 * 297.71013 * 17 16 15 19 19 C 1.53000 * 109.50115 * 177.63641 * 17 16 15 20 20 N 1.46896 * 109.47742 * 64.99882 * 19 17 16 21 21 C 1.46895 * 111.00326 * 179.97438 * 20 19 17 22 22 C 1.46839 * 111.00259 * 293.01451 * 13 3 2 23 23 H 1.09001 * 109.46942 * 186.27730 * 1 2 3 24 24 H 1.09006 * 109.47094 * 66.28595 * 1 2 3 25 25 H 1.08994 * 109.47617 * 306.28032 * 1 2 3 26 26 H 1.08998 * 109.47163 * 119.99803 * 2 1 3 27 27 H 1.08998 * 109.47284 * 240.00549 * 2 1 3 28 28 H 0.96994 * 120.00554 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.46531 * 294.17010 * 14 13 3 30 30 H 1.08997 * 109.46896 * 54.15374 * 14 13 3 31 31 H 1.09003 * 109.50559 * 179.11657 * 15 14 13 32 32 H 1.09006 * 109.50593 * 299.23766 * 15 14 13 33 33 H 1.09001 * 109.52220 * 62.25484 * 16 15 14 34 34 H 1.09000 * 109.52584 * 182.37301 * 16 15 14 35 35 H 1.09000 * 109.47024 * 185.00292 * 19 17 16 36 36 H 1.09001 * 109.47038 * 304.99615 * 19 17 16 37 37 H 1.00899 * 110.99680 * 56.04105 * 20 19 17 38 38 H 1.09000 * 109.47074 * 60.00017 * 21 20 19 39 39 H 1.08999 * 109.47036 * 179.97438 * 21 20 19 40 40 H 1.08995 * 109.46897 * 299.99780 * 21 20 19 41 41 H 1.09003 * 109.46344 * 305.85647 * 22 13 3 42 42 H 1.09002 * 109.46223 * 65.82501 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5570 1.9987 0.8036 5 6 1.7179 2.0892 -1.3225 6 1 2.5161 2.3997 -1.9804 7 6 0.4041 2.2846 -1.6925 8 7 -0.5379 2.3275 -0.7759 9 14 -0.0378 2.4883 -3.4961 10 1 -0.3286 1.1577 -4.0879 11 1 -1.2364 3.3565 -3.6171 12 1 1.1005 3.1125 -4.2171 13 7 3.4944 1.4476 0.2064 14 6 4.1746 0.6511 -0.8227 15 6 5.6898 0.7972 -0.6640 16 6 6.1002 0.3197 0.7318 17 6 5.3413 1.1326 1.7843 18 1 5.6155 2.1842 1.6993 19 6 5.7013 0.6223 3.1810 20 7 7.1236 0.8779 3.4444 21 6 7.5059 0.4004 4.7800 22 6 3.8363 0.9768 1.5545 23 1 -0.3633 -1.0215 0.1124 24 1 -0.3633 0.4133 -0.9409 25 1 -0.3634 0.6081 0.8284 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 -1.4621 2.4646 -1.0362 29 1 3.8974 -0.3972 -0.7128 30 1 3.8775 1.0037 -1.8104 31 1 6.1946 0.1934 -1.4182 32 1 5.9695 1.8435 -0.7875 33 1 5.8560 -0.7368 0.8417 34 1 7.1728 0.4613 0.8644 35 1 5.0953 1.1402 3.9244 36 1 5.5081 -0.4490 3.2373 37 1 7.3414 1.8570 3.3347 38 1 7.3252 -0.6724 4.8478 39 1 8.5637 0.6017 4.9488 40 1 6.9125 0.9172 5.5341 41 1 3.2933 1.5659 2.2936 42 1 3.5606 -0.0731 1.6534 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040601542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:37 Heat of formation + Delta-G solvation = -14.401669 kcal Electronic energy + Delta-G solvation = -18454.827387 eV Core-core repulsion = 15854.814720 eV Total energy + Delta-G solvation = -2600.012667 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36124 -37.69708 -36.03170 -33.79051 -32.24336 -31.80795 -28.72066 -27.23246 -25.56500 -24.30668 -23.77793 -22.75716 -21.48126 -20.09497 -18.13256 -17.19566 -16.53667 -16.05851 -15.93981 -15.61341 -15.25472 -15.19885 -14.86357 -14.52060 -14.11070 -13.98225 -13.72887 -13.07214 -12.93710 -12.81780 -12.67866 -12.64868 -12.38846 -12.34090 -12.04814 -11.98263 -11.79421 -11.60271 -11.42106 -11.19385 -10.99846 -10.85032 -9.84421 -9.35327 -8.74871 -8.13179 -6.03568 1.41916 1.45781 1.53361 2.45667 3.13621 3.19203 3.54483 3.93750 4.05260 4.13412 4.35780 4.44196 4.51811 4.55234 4.58312 4.61786 4.65413 4.75283 4.76263 4.81696 4.83903 4.96600 5.06128 5.06497 5.13063 5.16183 5.27396 5.31091 5.38792 5.44339 5.50182 5.61676 5.74841 5.82759 6.01614 6.05168 6.22987 6.48258 6.56553 6.84554 6.98195 7.51965 8.93238 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039075 B = 0.005820 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.396420 B = 4810.099510 C = 5140.737550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.008 0.992 5 C -0.524 4.524 6 H 0.053 0.947 7 C 0.031 3.969 8 N -0.890 5.890 9 Si 0.934 3.066 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.541 5.541 14 C 0.064 3.936 15 C -0.113 4.113 16 C -0.092 4.092 17 C -0.071 4.071 18 H 0.068 0.932 19 C 0.073 3.927 20 N -0.697 5.697 21 C 0.028 3.972 22 C 0.063 3.937 23 H 0.017 0.983 24 H 0.066 0.934 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.038 0.962 28 H 0.261 0.739 29 H 0.017 0.983 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.346 0.654 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.022 0.978 41 H 0.051 0.949 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.567 -4.667 6.490 14.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.026 0.974 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.169 4.169 8 N -0.529 5.529 9 Si 0.760 3.240 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.264 5.264 14 C -0.064 4.064 15 C -0.151 4.151 16 C -0.130 4.130 17 C -0.090 4.090 18 H 0.087 0.913 19 C -0.057 4.057 20 N -0.328 5.328 21 C -0.122 4.122 22 C -0.066 4.066 23 H 0.036 0.964 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.164 0.836 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 12.764 -4.716 6.166 14.939 hybrid contribution -1.611 0.073 -0.198 1.625 sum 11.152 -4.643 5.968 13.474 Atomic orbital electron populations 1.21880 0.95574 0.96395 1.03606 1.22110 0.96978 0.99715 0.97711 1.19165 0.82739 0.91106 0.95940 0.97394 1.21171 0.91687 1.40417 1.02967 0.92898 1.25379 0.96464 0.94936 1.00162 1.70353 1.01304 1.47623 1.33574 0.85942 0.77572 0.77982 0.82461 1.20132 1.21234 1.19706 1.62107 1.09502 1.53115 1.01685 1.21943 0.94497 0.94130 0.95806 1.21626 0.93901 1.01561 0.97969 1.21404 1.00394 0.98250 0.92923 1.21066 0.93050 1.00233 0.94698 0.91337 1.21854 0.88328 1.00602 0.94947 1.60380 1.18123 1.24575 1.29729 1.22223 1.01282 1.00612 0.88054 1.22013 0.96259 0.97096 0.91253 0.96398 0.91496 0.94639 0.95104 0.94363 0.92908 0.96505 0.92420 0.90595 0.92167 0.93119 0.89998 0.95420 0.91369 0.83607 0.91928 0.90130 0.95942 0.93024 0.96058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.23 71.98 0.59 -5.04 16 2 C -0.13 -5.90 4.54 30.60 0.14 -5.76 16 3 C 0.22 11.02 1.94 44.17 0.09 11.10 16 4 H 0.01 0.47 7.89 -2.39 -0.02 0.45 16 5 C -0.52 -28.69 7.81 25.60 0.20 -28.49 16 6 H 0.05 2.95 6.82 -2.91 -0.02 2.93 16 7 C 0.03 1.68 3.73 84.66 0.32 1.99 16 8 N -0.89 -49.61 9.74 21.45 0.21 -49.40 16 9 Si 0.93 42.96 29.59 68.60 2.03 44.99 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 13 N -0.54 -23.35 4.62 -875.53 -4.04 -27.39 16 14 C 0.06 2.50 4.63 86.33 0.40 2.90 16 15 C -0.11 -3.43 6.09 30.65 0.19 -3.24 16 16 C -0.09 -2.49 5.14 30.67 0.16 -2.33 16 17 C -0.07 -2.03 2.49 -10.74 -0.03 -2.06 16 18 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 19 C 0.07 1.73 5.08 86.30 0.44 2.16 16 20 N -0.70 -14.08 6.36 -537.18 -3.42 -17.49 16 21 C 0.03 0.45 10.70 127.69 1.37 1.82 16 22 C 0.06 2.28 4.37 86.33 0.38 2.65 16 23 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.07 3.51 4.75 -2.38 -0.01 3.50 16 25 H 0.03 1.79 7.58 -2.39 -0.02 1.77 16 26 H 0.03 1.34 6.36 -2.39 -0.02 1.32 16 27 H 0.04 1.79 6.98 -2.39 -0.02 1.77 16 28 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 29 H 0.02 0.66 6.79 -2.39 -0.02 0.64 16 30 H 0.06 2.48 6.40 -2.39 -0.02 2.47 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.99 7.83 -2.39 -0.02 1.98 16 35 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.35 6.39 8.81 -89.69 -0.79 5.60 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.05 1.96 8.05 -2.39 -0.02 1.94 16 42 H 0.02 0.78 6.60 -2.39 -0.02 0.77 16 Total: -1.00 -57.54 310.99 -0.81 -58.35 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.18 Total: 15.25 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 4.23 Total: -24.30 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -7.25 Total: -94.29 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -57.54 -0.81 -58.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040601542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.947 kcal (2) G-P(sol) polarization free energy of solvation -57.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds