Wall clock time and date at job start Mon Mar 30 2020 04:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.52999 * 109.47124 * 239.99588 * 2 1 3 5 5 C 1.52996 * 109.46820 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47336 * 60.00348 * 5 4 2 7 7 C 1.53002 * 109.46731 * 299.99958 * 6 5 4 8 8 C 1.52998 * 109.46886 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47086 * 53.26311 * 8 7 6 10 10 C 1.36942 * 119.99958 * 173.20017 * 9 8 7 11 11 H 1.08001 * 119.99903 * 0.02562 * 10 9 8 12 12 C 1.38815 * 119.99980 * 180.02562 * 10 9 8 13 13 N 1.31625 * 119.99768 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00101 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47434 * 270.00580 * 14 12 10 16 16 H 1.48498 * 109.47109 * 150.00126 * 14 12 10 17 17 H 1.48507 * 109.46821 * 30.00502 * 14 12 10 18 18 N 1.46897 * 109.47057 * 299.99529 * 7 6 5 19 19 C 1.46896 * 110.99904 * 180.59080 * 18 7 6 20 20 C 1.46903 * 111.00124 * 304.54498 * 18 7 6 21 21 C 1.52996 * 109.47176 * 59.99944 * 7 6 5 22 22 H 1.08998 * 109.46889 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47320 * 300.00245 * 1 2 3 24 24 H 1.09002 * 109.46892 * 60.00722 * 1 2 3 25 25 H 1.09002 * 109.47018 * 60.00303 * 4 2 1 26 26 H 1.08998 * 109.47575 * 299.99992 * 4 2 1 27 27 H 1.08999 * 109.47742 * 299.99644 * 5 4 2 28 28 H 1.09005 * 109.46905 * 179.97438 * 5 4 2 29 29 H 1.08994 * 109.47302 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.46703 * 59.99468 * 6 5 4 31 31 H 1.09001 * 109.47309 * 293.26807 * 8 7 6 32 32 H 1.08997 * 109.47636 * 173.26400 * 8 7 6 33 33 H 0.96999 * 119.99903 * 353.20805 * 9 8 7 34 34 H 0.96996 * 119.99955 * 359.97438 * 13 12 10 35 35 H 1.08999 * 109.47381 * 59.34487 * 19 18 7 36 36 H 1.09000 * 109.47467 * 179.34805 * 19 18 7 37 37 H 1.09008 * 109.47097 * 299.34473 * 19 18 7 38 38 H 1.08994 * 109.46927 * 51.36273 * 20 18 7 39 39 H 1.08997 * 109.47041 * 171.36836 * 20 18 7 40 40 H 1.09001 * 109.46534 * 291.36526 * 20 18 7 41 41 H 1.09003 * 109.47659 * 59.99633 * 21 7 6 42 42 H 1.08997 * 109.47016 * 179.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2494 6 6 4.0806 -1.4416 -0.0002 7 6 3.5705 -0.7203 1.2490 8 6 4.0805 -1.4414 2.4983 9 7 5.5365 -1.5833 2.4200 10 6 6.2351 -2.0745 3.4906 11 1 5.7126 -2.3577 4.3923 12 6 7.6148 -2.2084 3.4166 13 7 8.2516 -1.8628 2.3177 14 14 8.5678 -2.8778 4.8771 15 1 8.9730 -1.7551 5.7604 16 1 9.7783 -3.5895 4.3941 17 1 7.7095 -3.8212 5.6378 18 7 4.0597 0.6649 1.2487 19 6 3.6001 1.3857 2.4433 20 6 5.5241 0.7060 1.1398 21 6 2.0405 -0.7209 1.2493 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.6768 -0.2075 -2.1392 26 1 1.6768 -1.7490 -1.2492 27 1 3.9331 0.3070 -1.2498 28 1 3.9334 -1.2351 -2.1392 29 1 5.1705 -1.4415 -0.0006 30 1 3.7175 -2.4694 0.0000 31 1 3.6222 -2.4284 2.5606 32 1 3.8189 -0.8628 3.3842 33 1 6.0057 -1.3291 1.6100 34 1 7.7567 -1.5148 1.5595 35 1 3.9629 0.8772 3.3365 36 1 3.9860 2.4049 2.4235 37 1 2.5104 1.4100 2.4562 38 1 5.8428 0.0960 0.2946 39 1 5.8483 1.7355 0.9878 40 1 5.9675 0.3170 2.0564 41 1 1.6775 -1.7486 1.2495 42 1 1.6772 -0.2074 2.1394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040669719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:33 Heat of formation + Delta-G solvation = 17.351229 kcal Electronic energy + Delta-G solvation = -19209.944642 eV Core-core repulsion = 16611.308884 eV Total energy + Delta-G solvation = -2598.635758 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.03779 -36.05465 -34.03707 -32.16950 -31.20327 -29.55646 -27.48756 -25.64837 -24.99698 -23.62501 -22.40589 -21.51933 -19.83470 -18.38618 -17.27554 -15.70013 -15.20763 -14.85767 -14.68866 -13.88264 -13.80365 -13.67538 -13.33297 -13.10939 -12.67943 -12.13005 -12.03610 -11.94530 -11.65885 -11.58977 -11.49187 -11.07049 -10.95337 -10.80815 -10.69389 -10.54617 -10.42955 -10.22400 -10.05249 -9.72783 -9.53392 -9.20428 -8.86798 -7.65421 -6.89819 -6.11828 -3.10680 3.50609 3.55267 3.69411 4.44684 4.65857 4.89865 4.97861 5.04292 5.39329 5.41607 5.56485 5.57141 5.60874 5.65868 5.77399 5.80033 5.89380 5.91263 5.93768 6.01813 6.04462 6.08870 6.12880 6.19959 6.26752 6.30502 6.40835 6.44403 6.52909 6.58188 6.61242 6.68473 6.76203 6.82050 6.90153 7.59032 7.63393 7.81091 8.74124 9.21645 10.07375 10.22870 11.36070 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038041 B = 0.006663 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.872411 B = 4201.283245 C = 4289.373274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.082 0.918 4 C -0.107 4.107 5 C -0.112 4.112 6 C -0.105 4.105 7 C 0.103 3.897 8 C 0.129 3.871 9 N -0.740 5.740 10 C -0.333 4.333 11 H 0.062 0.938 12 C -0.044 4.044 13 N -0.943 5.943 14 Si 1.083 2.917 15 H -0.296 1.296 16 H -0.288 1.288 17 H -0.296 1.296 18 N -0.522 5.522 19 C 0.018 3.982 20 C -0.007 4.007 21 C -0.096 4.096 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.015 0.985 32 H 0.028 0.972 33 H 0.374 0.626 34 H 0.253 0.747 35 H 0.036 0.964 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.138 4.625 -5.111 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.100 0.900 4 C -0.145 4.145 5 C -0.150 4.150 6 C -0.142 4.142 7 C 0.013 3.987 8 C 0.000 4.000 9 N -0.390 5.390 10 C -0.464 4.464 11 H 0.080 0.920 12 C -0.242 4.242 13 N -0.589 5.589 14 Si 0.914 3.086 15 H -0.224 1.224 16 H -0.214 1.214 17 H -0.223 1.223 18 N -0.246 5.246 19 C -0.130 4.130 20 C -0.155 4.155 21 C -0.134 4.134 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.213 0.787 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.920 4.390 -4.764 13.567 hybrid contribution -1.085 -0.033 0.055 1.086 sum -13.005 4.357 -4.709 14.501 Atomic orbital electron populations 1.21859 0.96291 1.01229 1.01057 1.21007 0.93821 1.00824 0.94509 0.90003 1.21518 0.96013 0.99787 0.97141 1.21443 0.95149 1.01560 0.96802 1.21572 1.01011 0.98242 0.93414 1.21244 0.94181 0.88251 0.95043 1.21281 0.86289 0.96838 0.95560 1.42955 1.01142 1.78277 1.16612 1.20094 0.92365 1.39522 0.94420 0.92002 1.25747 0.93555 1.01344 1.03550 1.70872 1.37420 1.46443 1.04165 0.83191 0.75597 0.75897 0.73953 1.22363 1.21361 1.22255 1.62363 1.11259 1.13043 1.37909 1.22427 1.00108 0.98139 0.92376 1.23014 0.87694 1.00825 1.03971 1.21570 0.93865 1.00214 0.97779 0.93176 0.93106 0.93153 0.92813 0.92834 0.90903 0.93118 0.91340 0.92146 0.96718 0.95396 0.78742 0.93531 0.94552 0.92377 0.92022 0.91789 0.93197 0.90255 0.92079 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.20 37.16 0.34 -1.20 16 2 C -0.08 -1.04 2.56 -90.62 -0.23 -1.27 16 3 H 0.08 1.12 7.60 -51.93 -0.39 0.72 16 4 C -0.11 -1.34 5.20 -26.73 -0.14 -1.47 16 5 C -0.11 -1.59 5.77 -26.73 -0.15 -1.75 16 6 C -0.10 -1.77 4.01 -26.73 -0.11 -1.88 16 7 C 0.10 1.75 0.28 -131.60 -0.04 1.71 16 8 C 0.13 2.72 4.89 -4.04 -0.02 2.70 16 9 N -0.74 -18.57 3.44 -59.91 -0.21 -18.78 16 10 C -0.33 -9.46 9.99 -15.06 -0.15 -9.61 16 11 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 12 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 13 N -0.94 -28.98 13.70 55.49 0.76 -28.22 16 14 Si 1.08 26.20 29.92 -169.99 -5.09 21.11 16 15 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 18 N -0.52 -8.76 3.30 -235.41 -0.78 -9.54 16 19 C 0.02 0.28 8.83 60.06 0.53 0.81 16 20 C -0.01 -0.13 7.85 60.07 0.47 0.34 16 21 C -0.10 -1.37 3.65 -26.73 -0.10 -1.47 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.09 7.60 -51.93 -0.39 0.70 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.33 4.78 -51.93 -0.25 1.08 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.03 0.61 6.04 -51.93 -0.31 0.30 16 33 H 0.37 9.39 2.35 -40.82 -0.10 9.30 16 34 H 0.25 7.65 6.77 -40.82 -0.28 7.38 16 35 H 0.04 0.66 6.12 -51.93 -0.32 0.34 16 36 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 37 H 0.06 0.86 6.35 -51.92 -0.33 0.53 16 38 H 0.06 1.23 5.47 -51.93 -0.28 0.95 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.83 5.54 -51.93 -0.29 1.54 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 LS Contribution 301.84 15.07 4.55 4.55 Total: -1.00 -29.93 301.84 -7.58 -37.51 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -7.13 Total: 7.85 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 0.31 Total: -14.49 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.22 Total: -56.54 kcal Atomic # 14 Polarization: 26.20 SS G_CDS: -5.09 Total: 21.11 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.93 -7.58 -37.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040669719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.863 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds