Wall clock time and date at job start Mon Mar 30 2020 04:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.52999 * 109.47124 * 239.99588 * 2 1 3 5 5 C 1.52996 * 109.46820 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47336 * 60.00348 * 5 4 2 7 7 C 1.53002 * 109.46731 * 299.99958 * 6 5 4 8 8 C 1.52998 * 109.46886 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47086 * 53.26311 * 8 7 6 10 10 C 1.36942 * 119.99958 * 173.20017 * 9 8 7 11 11 H 1.08001 * 119.99903 * 0.02562 * 10 9 8 12 12 C 1.38815 * 119.99980 * 180.02562 * 10 9 8 13 13 N 1.31625 * 119.99768 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00101 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47434 * 270.00580 * 14 12 10 16 16 H 1.48498 * 109.47109 * 150.00126 * 14 12 10 17 17 H 1.48507 * 109.46821 * 30.00502 * 14 12 10 18 18 N 1.46897 * 109.47057 * 299.99529 * 7 6 5 19 19 C 1.46896 * 110.99904 * 180.59080 * 18 7 6 20 20 C 1.46903 * 111.00124 * 304.54498 * 18 7 6 21 21 C 1.52996 * 109.47176 * 59.99944 * 7 6 5 22 22 H 1.08998 * 109.46889 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47320 * 300.00245 * 1 2 3 24 24 H 1.09002 * 109.46892 * 60.00722 * 1 2 3 25 25 H 1.09002 * 109.47018 * 60.00303 * 4 2 1 26 26 H 1.08998 * 109.47575 * 299.99992 * 4 2 1 27 27 H 1.08999 * 109.47742 * 299.99644 * 5 4 2 28 28 H 1.09005 * 109.46905 * 179.97438 * 5 4 2 29 29 H 1.08994 * 109.47302 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.46703 * 59.99468 * 6 5 4 31 31 H 1.09001 * 109.47309 * 293.26807 * 8 7 6 32 32 H 1.08997 * 109.47636 * 173.26400 * 8 7 6 33 33 H 0.96999 * 119.99903 * 353.20805 * 9 8 7 34 34 H 0.96996 * 119.99955 * 359.97438 * 13 12 10 35 35 H 1.08999 * 109.47381 * 59.34487 * 19 18 7 36 36 H 1.09000 * 109.47467 * 179.34805 * 19 18 7 37 37 H 1.09008 * 109.47097 * 299.34473 * 19 18 7 38 38 H 1.08994 * 109.46927 * 51.36273 * 20 18 7 39 39 H 1.08997 * 109.47041 * 171.36836 * 20 18 7 40 40 H 1.09001 * 109.46534 * 291.36526 * 20 18 7 41 41 H 1.09003 * 109.47659 * 59.99633 * 21 7 6 42 42 H 1.08997 * 109.47016 * 179.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2494 6 6 4.0806 -1.4416 -0.0002 7 6 3.5705 -0.7203 1.2490 8 6 4.0805 -1.4414 2.4983 9 7 5.5365 -1.5833 2.4200 10 6 6.2351 -2.0745 3.4906 11 1 5.7126 -2.3577 4.3923 12 6 7.6148 -2.2084 3.4166 13 7 8.2516 -1.8628 2.3177 14 14 8.5678 -2.8778 4.8771 15 1 8.9730 -1.7551 5.7604 16 1 9.7783 -3.5895 4.3941 17 1 7.7095 -3.8212 5.6378 18 7 4.0597 0.6649 1.2487 19 6 3.6001 1.3857 2.4433 20 6 5.5241 0.7060 1.1398 21 6 2.0405 -0.7209 1.2493 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.6768 -0.2075 -2.1392 26 1 1.6768 -1.7490 -1.2492 27 1 3.9331 0.3070 -1.2498 28 1 3.9334 -1.2351 -2.1392 29 1 5.1705 -1.4415 -0.0006 30 1 3.7175 -2.4694 0.0000 31 1 3.6222 -2.4284 2.5606 32 1 3.8189 -0.8628 3.3842 33 1 6.0057 -1.3291 1.6100 34 1 7.7567 -1.5148 1.5595 35 1 3.9629 0.8772 3.3365 36 1 3.9860 2.4049 2.4235 37 1 2.5104 1.4100 2.4562 38 1 5.8428 0.0960 0.2946 39 1 5.8483 1.7355 0.9878 40 1 5.9675 0.3170 2.0564 41 1 1.6775 -1.7486 1.2495 42 1 1.6772 -0.2074 2.1394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040669719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:32 Heat of formation + Delta-G solvation = -0.056280 kcal Electronic energy + Delta-G solvation = -19210.699488 eV Core-core repulsion = 16611.308884 eV Total energy + Delta-G solvation = -2599.390604 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.42247 -37.43169 -35.88019 -33.46795 -32.87406 -31.17746 -28.81982 -26.93134 -26.65588 -25.19489 -24.23508 -22.71951 -20.99519 -19.86898 -19.28463 -17.22484 -16.78937 -16.20245 -16.11802 -15.74149 -15.26831 -15.16298 -14.73968 -14.55734 -13.81824 -13.63038 -13.25865 -13.19697 -13.15976 -12.95414 -12.94134 -12.60083 -12.59452 -12.21030 -12.05883 -12.02685 -11.91550 -11.71798 -11.38263 -11.29290 -10.98591 -10.90200 -10.74140 -9.31276 -8.88244 -8.43515 -5.35795 1.54116 1.64593 1.79240 2.66538 3.02891 3.36249 3.59721 3.82129 3.86638 3.95660 4.19271 4.24464 4.37205 4.40696 4.47748 4.54427 4.61396 4.66425 4.73769 4.77386 4.79942 4.84227 4.89648 4.97646 4.99549 5.08795 5.10962 5.14838 5.16595 5.26693 5.34480 5.44133 5.48500 5.52114 5.54610 5.74212 6.12321 6.20663 6.46262 7.06323 7.96546 8.08367 9.07684 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038041 B = 0.006663 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.872411 B = 4201.283245 C = 4289.373274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.077 4.077 3 H 0.075 0.925 4 C -0.104 4.104 5 C -0.105 4.105 6 C -0.103 4.103 7 C 0.109 3.891 8 C 0.127 3.873 9 N -0.748 5.748 10 C -0.339 4.339 11 H 0.057 0.943 12 C -0.099 4.099 13 N -0.970 5.970 14 Si 1.130 2.870 15 H -0.284 1.284 16 H -0.291 1.291 17 H -0.277 1.277 18 N -0.507 5.507 19 C 0.020 3.980 20 C 0.005 3.995 21 C -0.092 4.092 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.006 0.994 32 H 0.022 0.978 33 H 0.373 0.627 34 H 0.243 0.757 35 H 0.009 0.991 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.063 0.937 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.054 5.212 -5.439 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 H 0.094 0.906 4 C -0.141 4.141 5 C -0.143 4.143 6 C -0.141 4.141 7 C 0.019 3.981 8 C -0.001 4.001 9 N -0.397 5.397 10 C -0.470 4.470 11 H 0.075 0.925 12 C -0.291 4.291 13 N -0.618 5.618 14 Si 0.955 3.045 15 H -0.211 1.211 16 H -0.217 1.217 17 H -0.203 1.203 18 N -0.230 5.230 19 C -0.128 4.128 20 C -0.144 4.144 21 C -0.130 4.130 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.024 0.976 32 H 0.040 0.960 33 H 0.211 0.789 34 H 0.054 0.946 35 H 0.028 0.972 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.888 4.990 -5.095 15.612 hybrid contribution -0.528 -0.207 0.164 0.590 sum -14.415 4.783 -4.931 15.968 Atomic orbital electron populations 1.21804 0.94231 1.01836 1.02055 1.20959 0.95434 0.99927 0.93263 0.90646 1.21516 0.94165 1.00425 0.98020 1.21389 0.96785 1.00664 0.95415 1.21528 0.99009 0.98485 0.95047 1.21253 0.96209 0.87710 0.92921 1.21456 0.84174 0.96736 0.97700 1.43090 1.02771 1.78024 1.15829 1.20397 0.92919 1.38617 0.95080 0.92472 1.27147 0.94958 1.01707 1.05246 1.70972 1.37638 1.48362 1.04804 0.82586 0.74501 0.75933 0.71500 1.21126 1.21675 1.20263 1.62437 1.09551 1.12811 1.38251 1.22483 1.01626 0.98209 0.90525 1.22798 0.88985 1.01186 1.01452 1.21571 0.91132 1.00945 0.99348 0.92778 0.92546 0.91808 0.90800 0.92382 0.91548 0.92274 0.94536 0.92681 0.97598 0.95986 0.78907 0.94628 0.97246 0.91052 0.89501 0.92503 0.91708 0.94453 0.91821 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.20 71.98 0.66 -1.79 16 2 C -0.08 -1.70 2.56 -10.79 -0.03 -1.73 16 3 H 0.08 1.80 7.60 -2.39 -0.02 1.78 16 4 C -0.10 -2.28 5.20 30.59 0.16 -2.12 16 5 C -0.10 -2.84 5.77 30.59 0.18 -2.66 16 6 C -0.10 -3.49 4.01 30.60 0.12 -3.37 16 7 C 0.11 3.67 0.28 3.53 0.00 3.68 16 8 C 0.13 5.47 4.89 86.38 0.42 5.89 16 9 N -0.75 -38.83 3.44 -343.45 -1.18 -40.01 16 10 C -0.34 -19.70 9.99 84.03 0.84 -18.86 16 11 H 0.06 3.31 7.83 -2.91 -0.02 3.28 16 12 C -0.10 -5.85 5.50 84.86 0.47 -5.38 16 13 N -0.97 -61.14 13.70 21.65 0.30 -60.85 16 14 Si 1.13 53.15 29.92 68.60 2.05 55.21 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 16 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 18 N -0.51 -16.71 3.30 -898.70 -2.97 -19.68 16 19 C 0.02 0.60 8.83 127.69 1.13 1.73 16 20 C 0.00 0.18 7.85 127.69 1.00 1.18 16 21 C -0.09 -2.44 3.65 30.59 0.11 -2.33 16 22 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.89 7.60 -2.39 -0.02 1.87 16 28 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.04 1.47 4.78 -2.39 -0.01 1.46 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.01 0.27 8.14 -2.39 -0.02 0.26 16 32 H 0.02 0.98 6.04 -2.39 -0.01 0.97 16 33 H 0.37 19.58 2.35 -92.71 -0.22 19.37 16 34 H 0.24 15.30 6.77 -92.71 -0.63 14.68 16 35 H 0.01 0.33 6.12 -2.39 -0.01 0.31 16 36 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 37 H 0.09 2.20 6.35 -2.38 -0.02 2.19 16 38 H 0.06 2.27 5.47 -2.39 -0.01 2.26 16 39 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.04 1.79 5.54 -2.39 -0.01 1.78 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.07 1.69 6.43 -2.39 -0.02 1.67 16 Total: -1.00 -65.30 301.84 4.16 -61.14 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.90 Total: 29.95 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 5.06 Total: -25.76 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -3.86 Total: -120.54 kcal Atomic # 14 Polarization: 53.15 SS G_CDS: 2.05 Total: 55.21 kcal Total: -65.30 4.16 -61.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040669719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.081 kcal (2) G-P(sol) polarization free energy of solvation -65.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds