Wall clock time and date at job start Mon Mar 30 2020 04:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46478 * 2 1 4 4 C 1.53000 * 109.46989 * 119.99682 * 2 1 3 5 5 C 1.53005 * 109.46989 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47024 * 300.00268 * 5 4 2 7 7 C 1.53002 * 109.47031 * 60.00334 * 6 5 4 8 8 C 1.52992 * 109.47324 * 59.99619 * 7 6 5 9 9 N 1.46505 * 109.46945 * 174.73030 * 8 7 6 10 10 C 1.36940 * 119.99858 * 184.75059 * 9 8 7 11 11 H 1.07995 * 120.00366 * 359.97438 * 10 9 8 12 12 C 1.38812 * 119.99559 * 179.97438 * 10 9 8 13 13 N 1.31623 * 119.99661 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00518 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46981 * 89.99998 * 14 12 10 16 16 H 1.48496 * 109.47328 * 210.00384 * 14 12 10 17 17 H 1.48503 * 109.47118 * 330.00288 * 14 12 10 18 18 N 1.46900 * 109.47033 * 179.97438 * 7 6 5 19 19 C 1.46903 * 110.99883 * 297.62423 * 18 7 6 20 20 C 1.46901 * 111.00212 * 61.57481 * 18 7 6 21 21 C 1.53001 * 109.47024 * 239.99950 * 2 1 3 22 22 H 1.08999 * 109.46975 * 299.99973 * 1 2 3 23 23 H 1.09004 * 109.46941 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47075 * 60.00030 * 1 2 3 25 25 H 1.08999 * 109.47135 * 300.00347 * 4 2 1 26 26 H 1.09004 * 109.46815 * 60.00491 * 4 2 1 27 27 H 1.09003 * 109.46478 * 60.00318 * 5 4 2 28 28 H 1.09002 * 109.47075 * 180.02562 * 5 4 2 29 29 H 1.08998 * 109.46578 * 179.97438 * 6 5 4 30 30 H 1.08991 * 109.47199 * 300.00043 * 6 5 4 31 31 H 1.09005 * 109.47161 * 294.72158 * 8 7 6 32 32 H 1.08997 * 109.47517 * 54.72928 * 8 7 6 33 33 H 0.97001 * 120.00096 * 4.73793 * 9 8 7 34 34 H 0.97000 * 119.99864 * 180.02562 * 13 12 10 35 35 H 1.09000 * 109.46968 * 59.04925 * 19 18 7 36 36 H 1.08998 * 109.47243 * 179.04627 * 19 18 7 37 37 H 1.09001 * 109.46851 * 299.04735 * 19 18 7 38 38 H 1.09008 * 109.46964 * 59.99830 * 20 18 7 39 39 H 1.08995 * 109.47136 * 180.02562 * 20 18 7 40 40 H 1.09003 * 109.47109 * 300.00592 * 20 18 7 41 41 H 1.08990 * 109.47227 * 299.99492 * 21 2 1 42 42 H 1.09002 * 109.47178 * 60.00083 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5701 -0.7206 1.2496 6 6 4.0806 -1.4415 0.0004 7 6 3.5706 -0.7202 -1.2489 8 6 4.0800 0.7224 -1.2485 9 7 3.6980 1.3755 -2.5031 10 6 4.1300 2.6468 -2.7724 11 1 4.7519 3.1681 -2.0598 12 6 3.7685 3.2653 -3.9614 13 7 4.1832 4.4874 -4.2200 14 14 2.6934 2.3633 -5.1943 15 1 1.2644 2.6434 -4.9030 16 1 3.0189 2.8266 -6.5670 17 1 2.9422 0.9028 -5.0928 18 7 4.0613 -1.4120 -2.4483 19 6 5.5287 -1.3815 -2.5104 20 6 3.5607 -2.7920 -2.5019 21 6 2.0400 -0.7213 -1.2493 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 1.6766 -0.2073 2.1392 26 1 1.6767 -1.7489 1.2492 27 1 3.9329 0.3072 1.2498 28 1 3.9334 -1.2348 2.1394 29 1 5.1706 -1.4407 0.0004 30 1 3.7176 -2.4692 0.0001 31 1 3.6411 1.2625 -0.4096 32 1 5.1659 0.7243 -1.1539 33 1 3.1393 0.9073 -3.1431 34 1 3.9303 4.9198 -5.0506 35 1 5.9399 -1.8598 -1.6214 36 1 5.8659 -1.9152 -3.3989 37 1 5.8689 -0.3470 -2.5567 38 1 2.4709 -2.7826 -2.5251 39 1 3.9393 -3.2813 -3.3993 40 1 3.9006 -3.3363 -1.6208 41 1 1.6768 -1.7489 -1.2492 42 1 1.6767 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040669721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:35 Heat of formation + Delta-G solvation = 9.564854 kcal Electronic energy + Delta-G solvation = -19190.290637 eV Core-core repulsion = 16591.317237 eV Total energy + Delta-G solvation = -2598.973400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.11513 -35.96124 -34.17708 -32.09417 -31.28272 -29.47670 -27.78776 -26.17214 -25.15742 -23.71971 -22.17096 -21.53059 -20.15847 -18.18452 -17.10516 -15.93806 -15.01950 -14.71126 -14.64287 -14.31344 -14.04411 -13.54451 -13.30996 -12.93037 -12.73901 -12.40359 -12.38094 -12.18170 -11.87899 -11.61084 -11.49376 -11.33377 -11.17660 -10.94081 -10.80128 -10.55193 -10.42033 -10.12447 -10.02461 -9.89306 -9.64628 -9.45525 -8.73049 -7.84140 -7.02618 -5.64577 -2.96373 3.49272 3.56238 3.59604 4.20749 4.73623 4.84736 4.87885 5.06243 5.24872 5.29337 5.38848 5.46741 5.50944 5.57674 5.65862 5.68166 5.72469 5.80855 5.82384 5.84796 5.89802 5.99674 6.02704 6.06050 6.12237 6.18300 6.26407 6.35756 6.36153 6.38905 6.46037 6.60600 6.66249 6.77345 6.86063 7.46083 7.49256 8.14303 8.55881 9.39130 10.12075 10.35487 11.54313 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.009212 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.265421 B = 3038.706985 C = 3422.898261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.085 0.915 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.143 4.143 7 C 0.104 3.896 8 C 0.170 3.830 9 N -0.743 5.743 10 C -0.235 4.235 11 H 0.086 0.914 12 C 0.003 3.997 13 N -0.939 5.939 14 Si 0.878 3.122 15 H -0.287 1.287 16 H -0.295 1.295 17 H -0.268 1.268 18 N -0.526 5.526 19 C 0.023 3.977 20 C 0.019 3.981 21 C -0.095 4.095 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.023 0.977 33 H 0.369 0.631 34 H 0.257 0.743 35 H 0.020 0.980 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.022 0.978 41 H 0.055 0.945 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.498 -15.178 9.488 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.103 0.897 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.182 4.182 7 C 0.014 3.986 8 C 0.042 3.958 9 N -0.389 5.389 10 C -0.365 4.365 11 H 0.103 0.897 12 C -0.193 4.193 13 N -0.588 5.588 14 Si 0.708 3.292 15 H -0.214 1.214 16 H -0.222 1.222 17 H -0.193 1.193 18 N -0.248 5.248 19 C -0.125 4.125 20 C -0.129 4.129 21 C -0.133 4.133 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.203 0.797 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.041 0.959 41 H 0.073 0.927 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.557 -14.724 9.070 17.655 hybrid contribution -0.352 -1.016 -0.337 1.127 sum -3.909 -15.739 8.733 18.419 Atomic orbital electron populations 1.21795 0.95622 1.01040 1.01664 1.21208 0.95059 1.00978 0.94213 0.89689 1.21575 0.95401 1.00077 0.97717 1.21519 0.95799 1.01345 0.96858 1.22146 1.00666 0.99488 0.95937 1.21349 0.95084 0.95267 0.86889 1.20752 0.96646 0.88388 0.90034 1.42591 1.62277 1.15238 1.18800 1.19062 1.25658 0.89239 1.02588 0.89654 1.24610 1.00668 0.96179 0.97800 1.69713 1.50213 1.13110 1.25788 0.86598 0.80859 0.80247 0.81477 1.21393 1.22157 1.19309 1.62078 1.09758 1.14389 1.38600 1.22435 0.87311 1.03474 0.99256 1.22458 1.00923 0.89608 0.99931 1.21581 0.93652 0.99743 0.98348 0.92991 0.93343 0.92525 0.92328 0.92658 0.91127 0.92626 0.91912 0.92197 0.95084 0.95915 0.79686 0.93322 0.96148 0.92288 0.89758 0.91487 0.92060 0.95910 0.92684 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 2 C -0.10 -1.34 2.45 -90.62 -0.22 -1.56 16 3 H 0.08 1.39 6.31 -51.93 -0.33 1.07 16 4 C -0.11 -1.31 5.20 -26.73 -0.14 -1.45 16 5 C -0.12 -1.44 5.65 -26.73 -0.15 -1.59 16 6 C -0.14 -1.90 4.05 -26.73 -0.11 -2.01 16 7 C 0.10 1.65 0.11 -131.57 -0.01 1.64 16 8 C 0.17 3.34 3.82 -4.04 -0.02 3.32 16 9 N -0.74 -17.96 4.99 -59.91 -0.30 -18.25 16 10 C -0.24 -6.77 10.47 -15.06 -0.16 -6.92 16 11 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 12 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 13 N -0.94 -30.17 13.97 55.49 0.78 -29.40 16 14 Si 0.88 22.94 27.73 -169.99 -4.71 18.22 16 15 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 16 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 17 H -0.27 -6.74 6.52 56.52 0.37 -6.37 16 18 N -0.53 -8.61 4.33 -235.37 -1.02 -9.63 16 19 C 0.02 0.36 8.81 60.07 0.53 0.89 16 20 C 0.02 0.25 8.82 60.07 0.53 0.78 16 21 C -0.10 -1.46 3.61 -26.70 -0.10 -1.55 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 30 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 31 H 0.03 0.62 4.83 -51.93 -0.25 0.37 16 32 H 0.02 0.47 6.69 -51.93 -0.35 0.12 16 33 H 0.37 9.00 4.33 -40.82 -0.18 8.82 16 34 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 35 H 0.02 0.28 6.31 -51.93 -0.33 -0.05 16 36 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 37 H 0.08 1.55 6.43 -51.93 -0.33 1.21 16 38 H 0.07 0.86 6.27 -51.92 -0.33 0.53 16 39 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 40 H 0.02 0.27 6.34 -51.93 -0.33 -0.06 16 41 H 0.05 0.75 6.38 -51.93 -0.33 0.42 16 42 H 0.07 1.29 7.10 -51.93 -0.37 0.92 16 LS Contribution 301.29 15.07 4.54 4.54 Total: -1.00 -31.21 301.29 -7.41 -38.63 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.10 Total: 5.82 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 0.40 Total: -9.92 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.54 Total: -57.29 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.22 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.21 -7.41 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040669721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.190 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds