Wall clock time and date at job start Mon Mar 30 2020 04:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46478 * 2 1 4 4 C 1.53000 * 109.46989 * 119.99682 * 2 1 3 5 5 C 1.53005 * 109.46989 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47024 * 300.00268 * 5 4 2 7 7 C 1.53002 * 109.47031 * 60.00334 * 6 5 4 8 8 C 1.52992 * 109.47324 * 59.99619 * 7 6 5 9 9 N 1.46505 * 109.46945 * 174.73030 * 8 7 6 10 10 C 1.36940 * 119.99858 * 184.75059 * 9 8 7 11 11 H 1.07995 * 120.00366 * 359.97438 * 10 9 8 12 12 C 1.38812 * 119.99559 * 179.97438 * 10 9 8 13 13 N 1.31623 * 119.99661 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00518 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46981 * 89.99998 * 14 12 10 16 16 H 1.48496 * 109.47328 * 210.00384 * 14 12 10 17 17 H 1.48503 * 109.47118 * 330.00288 * 14 12 10 18 18 N 1.46900 * 109.47033 * 179.97438 * 7 6 5 19 19 C 1.46903 * 110.99883 * 297.62423 * 18 7 6 20 20 C 1.46901 * 111.00212 * 61.57481 * 18 7 6 21 21 C 1.53001 * 109.47024 * 239.99950 * 2 1 3 22 22 H 1.08999 * 109.46975 * 299.99973 * 1 2 3 23 23 H 1.09004 * 109.46941 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47075 * 60.00030 * 1 2 3 25 25 H 1.08999 * 109.47135 * 300.00347 * 4 2 1 26 26 H 1.09004 * 109.46815 * 60.00491 * 4 2 1 27 27 H 1.09003 * 109.46478 * 60.00318 * 5 4 2 28 28 H 1.09002 * 109.47075 * 180.02562 * 5 4 2 29 29 H 1.08998 * 109.46578 * 179.97438 * 6 5 4 30 30 H 1.08991 * 109.47199 * 300.00043 * 6 5 4 31 31 H 1.09005 * 109.47161 * 294.72158 * 8 7 6 32 32 H 1.08997 * 109.47517 * 54.72928 * 8 7 6 33 33 H 0.97001 * 120.00096 * 4.73793 * 9 8 7 34 34 H 0.97000 * 119.99864 * 180.02562 * 13 12 10 35 35 H 1.09000 * 109.46968 * 59.04925 * 19 18 7 36 36 H 1.08998 * 109.47243 * 179.04627 * 19 18 7 37 37 H 1.09001 * 109.46851 * 299.04735 * 19 18 7 38 38 H 1.09008 * 109.46964 * 59.99830 * 20 18 7 39 39 H 1.08995 * 109.47136 * 180.02562 * 20 18 7 40 40 H 1.09003 * 109.47109 * 300.00592 * 20 18 7 41 41 H 1.08990 * 109.47227 * 299.99492 * 21 2 1 42 42 H 1.09002 * 109.47178 * 60.00083 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5701 -0.7206 1.2496 6 6 4.0806 -1.4415 0.0004 7 6 3.5706 -0.7202 -1.2489 8 6 4.0800 0.7224 -1.2485 9 7 3.6980 1.3755 -2.5031 10 6 4.1300 2.6468 -2.7724 11 1 4.7519 3.1681 -2.0598 12 6 3.7685 3.2653 -3.9614 13 7 4.1832 4.4874 -4.2200 14 14 2.6934 2.3633 -5.1943 15 1 1.2644 2.6434 -4.9030 16 1 3.0189 2.8266 -6.5670 17 1 2.9422 0.9028 -5.0928 18 7 4.0613 -1.4120 -2.4483 19 6 5.5287 -1.3815 -2.5104 20 6 3.5607 -2.7920 -2.5019 21 6 2.0400 -0.7213 -1.2493 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 1.6766 -0.2073 2.1392 26 1 1.6767 -1.7489 1.2492 27 1 3.9329 0.3072 1.2498 28 1 3.9334 -1.2348 2.1394 29 1 5.1706 -1.4407 0.0004 30 1 3.7176 -2.4692 0.0001 31 1 3.6411 1.2625 -0.4096 32 1 5.1659 0.7243 -1.1539 33 1 3.1393 0.9073 -3.1431 34 1 3.9303 4.9198 -5.0506 35 1 5.9399 -1.8598 -1.6214 36 1 5.8659 -1.9152 -3.3989 37 1 5.8689 -0.3470 -2.5567 38 1 2.4709 -2.7826 -2.5251 39 1 3.9393 -3.2813 -3.3993 40 1 3.9006 -3.3363 -1.6208 41 1 1.6768 -1.7489 -1.2492 42 1 1.6767 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040669721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:35 Heat of formation + Delta-G solvation = -11.316056 kcal Electronic energy + Delta-G solvation = -19191.196101 eV Core-core repulsion = 16591.317237 eV Total energy + Delta-G solvation = -2599.878865 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33210 -37.08668 -36.14652 -33.42119 -33.08880 -30.86821 -29.06490 -27.26632 -26.72961 -24.95378 -23.93717 -22.78621 -21.26893 -20.03208 -18.73955 -17.14022 -16.61509 -16.24805 -15.95431 -15.57027 -15.42238 -14.90385 -14.70398 -14.42632 -14.22972 -13.85736 -13.64399 -13.38944 -13.16413 -12.96802 -12.87674 -12.65876 -12.51616 -12.43427 -12.14257 -12.05692 -11.81868 -11.68575 -11.63804 -11.14552 -11.09166 -10.91955 -10.81950 -9.16331 -9.00864 -7.98891 -5.27322 1.39023 1.41309 1.51840 2.52138 3.02001 3.33542 3.68865 3.74884 3.95508 4.00639 4.18347 4.23262 4.29214 4.43775 4.46924 4.50722 4.58441 4.66093 4.70937 4.73757 4.83728 4.86675 4.98834 5.00693 5.03446 5.06499 5.10161 5.16801 5.18054 5.20272 5.34676 5.36764 5.45696 5.55022 5.67462 5.78885 6.22706 6.28334 6.33328 7.15560 7.95790 8.17486 9.23385 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.009212 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.265421 B = 3038.706985 C = 3422.898261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.050 0.950 4 C -0.103 4.103 5 C -0.117 4.117 6 C -0.135 4.135 7 C 0.110 3.890 8 C 0.168 3.832 9 N -0.742 5.742 10 C -0.221 4.221 11 H 0.052 0.948 12 C -0.064 4.064 13 N -0.987 5.987 14 Si 0.948 3.052 15 H -0.281 1.281 16 H -0.298 1.298 17 H -0.252 1.252 18 N -0.554 5.554 19 C 0.028 3.972 20 C 0.021 3.979 21 C -0.092 4.092 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.029 0.971 32 H 0.012 0.988 33 H 0.370 0.630 34 H 0.255 0.745 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 -18.479 10.394 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.069 0.931 4 C -0.141 4.141 5 C -0.156 4.156 6 C -0.174 4.174 7 C 0.021 3.979 8 C 0.042 3.958 9 N -0.387 5.387 10 C -0.353 4.353 11 H 0.070 0.930 12 C -0.255 4.255 13 N -0.639 5.639 14 Si 0.776 3.224 15 H -0.207 1.207 16 H -0.225 1.225 17 H -0.177 1.177 18 N -0.277 5.277 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.130 4.130 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.030 0.970 33 H 0.205 0.795 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.820 -18.070 10.012 21.213 hybrid contribution 0.107 0.035 -0.531 0.543 sum -4.713 -18.036 9.481 20.914 Atomic orbital electron populations 1.21766 0.94332 1.02254 1.01440 1.21180 0.96191 0.99206 0.94989 0.93135 1.21535 0.94832 1.00956 0.96748 1.21531 0.96287 1.00330 0.97406 1.22074 1.00515 1.00168 0.94670 1.21219 0.95517 0.92685 0.88508 1.20891 0.95950 0.91210 0.87785 1.42550 1.62003 1.13777 1.20373 1.19045 1.23925 0.90741 1.01548 0.92991 1.25371 1.02894 0.97107 1.00082 1.69884 1.52416 1.15052 1.26513 0.85478 0.78954 0.79599 0.78342 1.20693 1.22506 1.17701 1.62023 1.09973 1.16653 1.39053 1.22322 0.87448 1.01447 1.00741 1.22493 1.01172 0.87769 1.01191 1.21562 0.92968 1.00849 0.97603 0.91945 0.91336 0.94119 0.91230 0.90640 0.93225 0.90240 0.92168 0.90065 0.95309 0.97043 0.79536 0.93585 0.94203 0.91234 0.93425 0.90965 0.91274 0.94105 0.90218 0.94011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.19 71.98 0.66 -2.53 16 2 C -0.10 -2.54 2.45 -10.79 -0.03 -2.57 16 3 H 0.05 1.67 6.31 -2.39 -0.02 1.65 16 4 C -0.10 -2.12 5.20 30.60 0.16 -1.96 16 5 C -0.12 -2.57 5.65 30.60 0.17 -2.40 16 6 C -0.13 -3.18 4.05 30.60 0.12 -3.06 16 7 C 0.11 3.34 0.11 3.55 0.00 3.34 16 8 C 0.17 6.73 3.82 86.38 0.33 7.06 16 9 N -0.74 -36.44 4.99 -343.45 -1.71 -38.15 16 10 C -0.22 -13.17 10.47 84.03 0.88 -12.29 16 11 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 12 C -0.06 -3.91 5.50 84.86 0.47 -3.44 16 13 N -0.99 -65.47 13.97 21.65 0.30 -65.17 16 14 Si 0.95 48.30 27.73 68.60 1.90 50.20 16 15 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 16 H -0.30 -15.27 7.11 99.48 0.71 -14.57 16 17 H -0.25 -12.07 6.52 99.48 0.65 -11.42 16 18 N -0.55 -17.02 4.33 -898.57 -3.89 -20.91 16 19 C 0.03 0.85 8.81 127.69 1.13 1.98 16 20 C 0.02 0.49 8.82 127.69 1.13 1.61 16 21 C -0.09 -2.63 3.61 30.61 0.11 -2.52 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.05 1.29 6.55 -2.39 -0.02 1.28 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.46 6.43 -2.39 -0.02 1.45 16 30 H 0.08 1.63 6.44 -2.39 -0.02 1.61 16 31 H 0.03 1.19 4.83 -2.38 -0.01 1.18 16 32 H 0.01 0.49 6.69 -2.39 -0.02 0.48 16 33 H 0.37 18.00 4.33 -92.71 -0.40 17.60 16 34 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 35 H 0.04 1.02 6.31 -2.39 -0.02 1.00 16 36 H 0.07 1.90 8.10 -2.39 -0.02 1.88 16 37 H 0.05 1.76 6.43 -2.39 -0.02 1.75 16 38 H 0.07 1.57 6.27 -2.38 -0.01 1.56 16 39 H 0.07 1.47 8.11 -2.39 -0.02 1.45 16 40 H 0.04 0.79 6.34 -2.39 -0.02 0.78 16 41 H 0.08 1.88 6.38 -2.39 -0.02 1.87 16 42 H 0.04 1.44 7.10 -2.39 -0.02 1.43 16 Total: -1.00 -69.09 301.29 2.26 -66.83 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.53 Total: 23.98 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 5.13 Total: -16.77 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -5.30 Total: -124.23 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 1.90 Total: 50.20 kcal Total: -69.09 2.26 -66.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040669721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.512 kcal (2) G-P(sol) polarization free energy of solvation -69.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds