Wall clock time and date at job start Mon Mar 30 2020 04:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47174 * 2 1 4 4 C 1.53001 * 109.47057 * 240.00635 * 2 1 3 5 5 C 1.52994 * 109.47424 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47319 * 59.99463 * 5 4 2 7 7 C 1.52997 * 109.46992 * 300.00473 * 6 5 4 8 8 C 1.52998 * 109.47140 * 299.99429 * 7 6 5 9 9 N 1.46500 * 109.47219 * 185.33357 * 8 7 6 10 10 C 1.36938 * 120.00051 * 176.27525 * 9 8 7 11 11 H 1.07999 * 120.00029 * 0.02562 * 10 9 8 12 12 C 1.38819 * 119.99894 * 180.02562 * 10 9 8 13 13 N 1.31614 * 120.00102 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99595 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47529 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47216 * 120.00243 * 14 12 10 17 17 H 1.48502 * 109.47015 * 240.00009 * 14 12 10 18 18 N 1.46907 * 109.47035 * 179.97438 * 7 6 5 19 19 C 1.46897 * 111.00207 * 297.63506 * 18 7 6 20 20 C 1.46907 * 110.99571 * 61.58862 * 18 7 6 21 21 C 1.52992 * 109.47132 * 120.00302 * 2 1 3 22 22 H 1.09001 * 109.46624 * 299.99862 * 1 2 3 23 23 H 1.09003 * 109.47232 * 59.99558 * 1 2 3 24 24 H 1.08994 * 109.47269 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.46745 * 300.00156 * 4 2 1 26 26 H 1.08993 * 109.47204 * 59.99636 * 4 2 1 27 27 H 1.08995 * 109.47615 * 179.97438 * 5 4 2 28 28 H 1.09001 * 109.46752 * 300.00161 * 5 4 2 29 29 H 1.08994 * 109.47298 * 180.02562 * 6 5 4 30 30 H 1.09003 * 109.46959 * 59.99731 * 6 5 4 31 31 H 1.08995 * 109.47450 * 305.34205 * 8 7 6 32 32 H 1.09007 * 109.47081 * 65.34049 * 8 7 6 33 33 H 0.96999 * 120.00340 * 356.28725 * 9 8 7 34 34 H 0.96994 * 119.99920 * 180.02562 * 13 12 10 35 35 H 1.08994 * 109.47055 * 178.32107 * 19 18 7 36 36 H 1.09001 * 109.46659 * 298.32646 * 19 18 7 37 37 H 1.09001 * 109.47111 * 58.32338 * 19 18 7 38 38 H 1.08993 * 109.47089 * 300.00043 * 20 18 7 39 39 H 1.08999 * 109.47060 * 60.00089 * 20 18 7 40 40 H 1.09004 * 109.46750 * 179.97438 * 20 18 7 41 41 H 1.09006 * 109.47173 * 60.00127 * 21 2 1 42 42 H 1.08997 * 109.47816 * 299.99876 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7217 -1.2491 6 6 4.0795 -1.4434 0.0001 7 6 3.5696 -0.7222 1.2494 8 6 4.0801 0.7201 1.2498 9 7 3.6994 1.3725 2.5050 10 6 4.1151 2.6510 2.7657 11 1 4.7232 3.1784 2.0457 12 6 3.7548 3.2690 3.9553 13 7 3.0141 2.6260 4.8329 14 14 4.3212 5.0132 4.3105 15 1 5.1355 5.5107 3.1726 16 1 3.1372 5.8909 4.4922 17 1 5.1408 5.0250 5.5488 18 7 4.0583 -1.4155 2.4488 19 6 3.5407 -2.7888 2.5108 20 6 5.5264 -1.4032 2.5024 21 6 2.0400 -0.7213 1.2491 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6766 -1.7489 -1.2494 26 1 1.6767 -0.2073 -2.1392 27 1 3.9333 -1.2358 -2.1389 28 1 3.9336 0.3058 -1.2487 29 1 5.1695 -1.4434 0.0005 30 1 3.7158 -2.4709 -0.0001 31 1 5.1659 0.7212 1.1544 32 1 3.6412 1.2611 0.4115 33 1 3.1531 0.8989 3.1516 34 1 2.7620 3.0580 5.6640 35 1 3.9417 -3.2888 3.3924 36 1 2.4526 -2.7646 2.5701 37 1 3.8438 -3.3321 1.6157 38 1 5.9263 -1.9049 1.6213 39 1 5.8805 -0.3726 2.5257 40 1 5.8615 -1.9225 3.4003 41 1 1.6767 -1.7490 1.2491 42 1 1.6768 -0.2076 2.1392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040669723.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:39 Heat of formation + Delta-G solvation = 6.541715 kcal Electronic energy + Delta-G solvation = -19092.460331 eV Core-core repulsion = 16493.355838 eV Total energy + Delta-G solvation = -2599.104494 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.97102 -35.82807 -33.99596 -31.98788 -31.06862 -29.16528 -27.55764 -26.04346 -24.92344 -23.59587 -22.37053 -21.61183 -20.04241 -17.76303 -16.84336 -15.80081 -14.93306 -14.62480 -14.43917 -14.19284 -14.06579 -13.46651 -13.15984 -12.84000 -12.52293 -12.40891 -12.26670 -12.02293 -11.76049 -11.45703 -11.27690 -11.18703 -10.99862 -10.80328 -10.75405 -10.48450 -10.37898 -10.02047 -9.92119 -9.78072 -9.54452 -9.51710 -8.70898 -7.66161 -6.69258 -5.60700 -2.86399 3.50537 3.56071 3.58207 4.35340 4.71593 4.95505 5.00570 5.16865 5.37570 5.40587 5.53550 5.59596 5.64908 5.67128 5.74820 5.78815 5.82984 5.92505 5.93580 5.96877 6.00078 6.13758 6.19652 6.22382 6.27167 6.35330 6.38444 6.46442 6.49833 6.53254 6.58189 6.72816 6.84063 6.90649 7.01859 7.62413 7.66148 7.82765 8.58826 9.70783 10.34879 10.72828 11.61919 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022679 B = 0.008100 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.317353 B = 3455.795377 C = 3934.509494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.083 0.917 4 C -0.110 4.110 5 C -0.116 4.116 6 C -0.144 4.144 7 C 0.108 3.892 8 C 0.165 3.835 9 N -0.718 5.718 10 C -0.232 4.232 11 H 0.065 0.935 12 C -0.015 4.015 13 N -0.928 5.928 14 Si 0.900 3.100 15 H -0.282 1.282 16 H -0.294 1.294 17 H -0.294 1.294 18 N -0.519 5.519 19 C 0.020 3.980 20 C 0.026 3.974 21 C -0.094 4.094 22 H 0.057 0.943 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.013 0.987 32 H 0.023 0.977 33 H 0.392 0.608 34 H 0.251 0.749 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.020 0.980 38 H 0.016 0.984 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 -10.594 -10.621 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.101 0.899 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.184 4.184 7 C 0.019 3.981 8 C 0.037 3.963 9 N -0.362 5.362 10 C -0.364 4.364 11 H 0.083 0.917 12 C -0.210 4.210 13 N -0.578 5.578 14 Si 0.732 3.268 15 H -0.208 1.208 16 H -0.221 1.221 17 H -0.221 1.221 18 N -0.241 5.241 19 C -0.128 4.128 20 C -0.122 4.122 21 C -0.132 4.132 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.041 0.959 33 H 0.228 0.772 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.948 -10.184 -10.195 14.442 hybrid contribution 0.532 0.328 -0.186 0.652 sum -0.416 -9.856 -10.381 14.321 Atomic orbital electron populations 1.21786 0.95700 1.00972 1.01590 1.21178 0.94992 1.00847 0.94225 0.89912 1.21581 0.95357 1.00079 0.97786 1.21504 0.95863 1.01202 0.96845 1.22170 1.00515 0.99519 0.96178 1.21271 0.95174 0.95138 0.86560 1.20765 0.95964 0.88748 0.90792 1.42267 1.62586 1.13777 1.17610 1.19261 1.25640 0.90538 1.00973 0.91670 1.24673 1.01115 0.98071 0.97188 1.69690 1.41725 1.36618 1.09735 0.86212 0.77716 0.85233 0.77629 1.20786 1.22117 1.22106 1.62043 1.08943 1.14576 1.38500 1.22448 1.00989 0.89755 0.99618 1.22397 0.87679 1.03102 0.99008 1.21552 0.93561 0.99545 0.98570 0.92348 0.93245 0.93414 0.92708 0.92514 0.92809 0.91299 0.92113 0.92293 0.96926 0.95914 0.77217 0.93861 0.92132 0.91434 0.96210 0.96540 0.90036 0.92351 0.93014 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.19 37.16 0.34 -1.58 16 2 C -0.09 -1.40 2.45 -90.62 -0.22 -1.62 16 3 H 0.08 1.44 6.32 -51.93 -0.33 1.12 16 4 C -0.11 -1.40 5.20 -26.73 -0.14 -1.54 16 5 C -0.12 -1.51 5.65 -26.73 -0.15 -1.67 16 6 C -0.14 -2.05 4.05 -26.73 -0.11 -2.16 16 7 C 0.11 1.84 0.11 -131.62 -0.01 1.82 16 8 C 0.17 3.41 3.85 -4.04 -0.02 3.40 16 9 N -0.72 -18.36 5.18 -59.91 -0.31 -18.68 16 10 C -0.23 -6.60 9.99 -15.06 -0.15 -6.75 16 11 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 12 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 13 N -0.93 -28.66 13.06 55.49 0.72 -27.93 16 14 Si 0.90 22.90 29.55 -169.99 -5.02 17.87 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 17 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 18 N -0.52 -9.07 4.32 -235.43 -1.02 -10.09 16 19 C 0.02 0.29 8.81 60.06 0.53 0.82 16 20 C 0.03 0.44 8.82 60.07 0.53 0.97 16 21 C -0.09 -1.56 3.57 -26.76 -0.10 -1.65 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.97 6.55 -51.93 -0.34 0.63 16 29 H 0.06 0.87 6.44 -51.93 -0.33 0.54 16 30 H 0.06 0.79 6.42 -51.93 -0.33 0.46 16 31 H 0.01 0.28 6.69 -51.93 -0.35 -0.07 16 32 H 0.02 0.48 4.83 -51.92 -0.25 0.23 16 33 H 0.39 10.79 6.47 -40.82 -0.26 10.52 16 34 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 36 H 0.07 0.96 6.35 -51.93 -0.33 0.63 16 37 H 0.02 0.26 6.28 -51.93 -0.33 -0.07 16 38 H 0.02 0.24 6.34 -51.93 -0.33 -0.09 16 39 H 0.08 1.57 6.40 -51.93 -0.33 1.24 16 40 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 41 H 0.05 0.77 6.40 -51.93 -0.33 0.44 16 42 H 0.08 1.59 7.12 -51.93 -0.37 1.22 16 LS Contribution 304.40 15.07 4.59 4.59 Total: -1.00 -30.08 304.40 -7.77 -37.85 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.14 Total: 6.87 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 0.41 Total: -10.48 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.60 Total: -56.70 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.08 -7.77 -37.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040669723.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.395 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds