Wall clock time and date at job start Mon Mar 30 2020 04:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47174 * 2 1 4 4 C 1.53001 * 109.47057 * 240.00635 * 2 1 3 5 5 C 1.52994 * 109.47424 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47319 * 59.99463 * 5 4 2 7 7 C 1.52997 * 109.46992 * 300.00473 * 6 5 4 8 8 C 1.52998 * 109.47140 * 299.99429 * 7 6 5 9 9 N 1.46500 * 109.47219 * 185.33357 * 8 7 6 10 10 C 1.36938 * 120.00051 * 176.27525 * 9 8 7 11 11 H 1.07999 * 120.00029 * 0.02562 * 10 9 8 12 12 C 1.38819 * 119.99894 * 180.02562 * 10 9 8 13 13 N 1.31614 * 120.00102 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99595 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47529 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47216 * 120.00243 * 14 12 10 17 17 H 1.48502 * 109.47015 * 240.00009 * 14 12 10 18 18 N 1.46907 * 109.47035 * 179.97438 * 7 6 5 19 19 C 1.46897 * 111.00207 * 297.63506 * 18 7 6 20 20 C 1.46907 * 110.99571 * 61.58862 * 18 7 6 21 21 C 1.52992 * 109.47132 * 120.00302 * 2 1 3 22 22 H 1.09001 * 109.46624 * 299.99862 * 1 2 3 23 23 H 1.09003 * 109.47232 * 59.99558 * 1 2 3 24 24 H 1.08994 * 109.47269 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.46745 * 300.00156 * 4 2 1 26 26 H 1.08993 * 109.47204 * 59.99636 * 4 2 1 27 27 H 1.08995 * 109.47615 * 179.97438 * 5 4 2 28 28 H 1.09001 * 109.46752 * 300.00161 * 5 4 2 29 29 H 1.08994 * 109.47298 * 180.02562 * 6 5 4 30 30 H 1.09003 * 109.46959 * 59.99731 * 6 5 4 31 31 H 1.08995 * 109.47450 * 305.34205 * 8 7 6 32 32 H 1.09007 * 109.47081 * 65.34049 * 8 7 6 33 33 H 0.96999 * 120.00340 * 356.28725 * 9 8 7 34 34 H 0.96994 * 119.99920 * 180.02562 * 13 12 10 35 35 H 1.08994 * 109.47055 * 178.32107 * 19 18 7 36 36 H 1.09001 * 109.46659 * 298.32646 * 19 18 7 37 37 H 1.09001 * 109.47111 * 58.32338 * 19 18 7 38 38 H 1.08993 * 109.47089 * 300.00043 * 20 18 7 39 39 H 1.08999 * 109.47060 * 60.00089 * 20 18 7 40 40 H 1.09004 * 109.46750 * 179.97438 * 20 18 7 41 41 H 1.09006 * 109.47173 * 60.00127 * 21 2 1 42 42 H 1.08997 * 109.47816 * 299.99876 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7217 -1.2491 6 6 4.0795 -1.4434 0.0001 7 6 3.5696 -0.7222 1.2494 8 6 4.0801 0.7201 1.2498 9 7 3.6994 1.3725 2.5050 10 6 4.1151 2.6510 2.7657 11 1 4.7232 3.1784 2.0457 12 6 3.7548 3.2690 3.9553 13 7 3.0141 2.6260 4.8329 14 14 4.3212 5.0132 4.3105 15 1 5.1355 5.5107 3.1726 16 1 3.1372 5.8909 4.4922 17 1 5.1408 5.0250 5.5488 18 7 4.0583 -1.4155 2.4488 19 6 3.5407 -2.7888 2.5108 20 6 5.5264 -1.4032 2.5024 21 6 2.0400 -0.7213 1.2491 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6766 -1.7489 -1.2494 26 1 1.6767 -0.2073 -2.1392 27 1 3.9333 -1.2358 -2.1389 28 1 3.9336 0.3058 -1.2487 29 1 5.1695 -1.4434 0.0005 30 1 3.7158 -2.4709 -0.0001 31 1 5.1659 0.7212 1.1544 32 1 3.6412 1.2611 0.4115 33 1 3.1531 0.8989 3.1516 34 1 2.7620 3.0580 5.6640 35 1 3.9417 -3.2888 3.3924 36 1 2.4526 -2.7646 2.5701 37 1 3.8438 -3.3321 1.6157 38 1 5.9263 -1.9049 1.6213 39 1 5.8805 -0.3726 2.5257 40 1 5.8615 -1.9225 3.4003 41 1 1.6767 -1.7490 1.2491 42 1 1.6768 -0.2076 2.1392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040669723.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:38 Heat of formation + Delta-G solvation = -12.923875 kcal Electronic energy + Delta-G solvation = -19093.304422 eV Core-core repulsion = 16493.355838 eV Total energy + Delta-G solvation = -2599.948585 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.27228 -37.04540 -35.98533 -33.22542 -32.91886 -30.64609 -28.92635 -27.22491 -26.63860 -24.97109 -24.19104 -22.79674 -21.24284 -19.42086 -18.69601 -17.09747 -16.61402 -16.08058 -15.94642 -15.59671 -15.36646 -14.89814 -14.56536 -14.39618 -14.06546 -13.80694 -13.53328 -13.28554 -12.98590 -12.91848 -12.82623 -12.64241 -12.51545 -12.39364 -12.12549 -12.06258 -11.79502 -11.66025 -11.58233 -11.10707 -11.05419 -10.88597 -10.76997 -8.92341 -8.82400 -7.85759 -5.10974 1.46785 1.47630 1.57347 2.59896 3.08850 3.46209 3.76417 3.81237 4.03377 4.15552 4.24603 4.26875 4.36220 4.46001 4.49623 4.59668 4.59804 4.67289 4.72596 4.75941 4.85998 4.87982 5.01168 5.02705 5.06677 5.09239 5.13699 5.19069 5.19647 5.22386 5.35971 5.38088 5.47861 5.52845 5.60596 5.70745 6.31687 6.36938 6.40003 7.43434 8.26757 8.52475 9.37828 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022679 B = 0.008100 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.317353 B = 3455.795377 C = 3934.509494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.049 0.951 4 C -0.103 4.103 5 C -0.116 4.116 6 C -0.136 4.136 7 C 0.114 3.886 8 C 0.167 3.833 9 N -0.726 5.726 10 C -0.236 4.236 11 H 0.067 0.933 12 C -0.076 4.076 13 N -0.965 5.965 14 Si 0.967 3.033 15 H -0.269 1.269 16 H -0.295 1.295 17 H -0.295 1.295 18 N -0.551 5.551 19 C 0.024 3.976 20 C 0.033 3.967 21 C -0.088 4.088 22 H 0.036 0.964 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.006 0.994 32 H 0.023 0.977 33 H 0.381 0.619 34 H 0.247 0.753 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 -11.962 -12.565 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 H 0.067 0.933 4 C -0.140 4.140 5 C -0.154 4.154 6 C -0.175 4.175 7 C 0.024 3.976 8 C 0.040 3.960 9 N -0.368 5.368 10 C -0.368 4.368 11 H 0.085 0.915 12 C -0.268 4.268 13 N -0.617 5.617 14 Si 0.797 3.203 15 H -0.193 1.193 16 H -0.222 1.222 17 H -0.223 1.223 18 N -0.274 5.274 19 C -0.124 4.124 20 C -0.115 4.115 21 C -0.126 4.126 22 H 0.055 0.945 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.024 0.976 32 H 0.041 0.959 33 H 0.214 0.786 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.786 -11.561 -12.185 16.815 hybrid contribution 0.499 0.726 0.391 0.964 sum -0.287 -10.835 -11.794 16.018 Atomic orbital electron populations 1.21752 0.94516 1.02120 1.01292 1.21139 0.96051 0.99078 0.94944 0.93294 1.21536 0.94962 1.00865 0.96682 1.21517 0.96169 1.00368 0.97310 1.22090 1.00476 1.00087 0.94888 1.21151 0.95276 0.92961 0.88177 1.20882 0.95383 0.91284 0.88470 1.42390 1.62276 1.13182 1.18985 1.19632 1.24652 0.91683 1.00824 0.91457 1.25452 1.01979 1.02063 0.97317 1.69855 1.43472 1.38259 1.10094 0.85161 0.77118 0.80560 0.77486 1.19318 1.22220 1.22273 1.61964 1.09375 1.16739 1.39303 1.22454 1.00886 0.88120 1.00946 1.22272 0.87592 1.01192 1.00451 1.21475 0.93298 1.00272 0.97526 0.94503 0.91737 0.91489 0.90828 0.91022 0.90112 0.93074 0.92136 0.90396 0.97641 0.95909 0.78593 0.94379 0.91457 0.91446 0.94121 0.94253 0.93531 0.91652 0.90914 0.94513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.19 71.98 0.66 -2.90 16 2 C -0.09 -2.70 2.45 -10.79 -0.03 -2.73 16 3 H 0.05 1.74 6.32 -2.39 -0.02 1.72 16 4 C -0.10 -2.29 5.20 30.59 0.16 -2.13 16 5 C -0.12 -2.68 5.65 30.59 0.17 -2.51 16 6 C -0.14 -3.49 4.05 30.59 0.12 -3.37 16 7 C 0.11 3.79 0.11 3.51 0.00 3.79 16 8 C 0.17 7.02 3.85 86.38 0.33 7.35 16 9 N -0.73 -38.45 5.18 -343.45 -1.78 -40.23 16 10 C -0.24 -13.69 9.99 84.04 0.84 -12.85 16 11 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 12 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 13 N -0.97 -61.38 13.06 21.65 0.28 -61.10 16 14 Si 0.97 47.97 29.55 68.60 2.03 50.00 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 17 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 18 N -0.55 -18.97 4.32 -898.77 -3.88 -22.84 16 19 C 0.02 0.63 8.81 127.69 1.13 1.75 16 20 C 0.03 1.08 8.82 127.69 1.13 2.21 16 21 C -0.09 -2.86 3.57 30.58 0.11 -2.75 16 22 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.37 6.55 -2.39 -0.02 1.35 16 29 H 0.06 1.57 6.44 -2.39 -0.02 1.55 16 30 H 0.08 1.75 6.42 -2.39 -0.02 1.74 16 31 H 0.01 0.25 6.69 -2.39 -0.02 0.23 16 32 H 0.02 0.98 4.83 -2.38 -0.01 0.97 16 33 H 0.38 21.87 6.47 -92.71 -0.60 21.27 16 34 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.07 1.69 8.09 -2.39 -0.02 1.67 16 36 H 0.07 1.78 6.35 -2.39 -0.02 1.77 16 37 H 0.04 0.91 6.28 -2.39 -0.01 0.90 16 38 H 0.04 1.08 6.34 -2.39 -0.02 1.07 16 39 H 0.05 1.83 6.40 -2.39 -0.02 1.81 16 40 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 41 H 0.07 2.04 6.40 -2.38 -0.02 2.02 16 42 H 0.04 1.51 7.12 -2.39 -0.02 1.49 16 Total: -1.00 -66.22 304.40 2.13 -64.09 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.39 Total: 28.29 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 5.09 Total: -18.20 kcal Atomic # 7 Polarization: -118.79 SS G_CDS: -5.38 Total: -124.17 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -66.22 2.13 -64.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040669723.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.163 kcal (2) G-P(sol) polarization free energy of solvation -66.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds