Wall clock time and date at job start Mon Mar 30 2020 04:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47011 * 2 1 4 4 C 1.52997 * 109.47085 * 120.00578 * 2 1 3 5 5 C 1.52996 * 109.47396 * 179.97438 * 4 2 1 6 6 C 1.52992 * 109.47198 * 300.00068 * 5 4 2 7 7 C 1.53002 * 109.47495 * 59.99689 * 6 5 4 8 8 C 1.52999 * 109.47359 * 180.02562 * 7 6 5 9 9 N 1.46497 * 109.47222 * 60.94071 * 8 7 6 10 10 C 1.36942 * 119.99958 * 175.65130 * 9 8 7 11 11 H 1.08002 * 119.99664 * 359.97438 * 10 9 8 12 12 C 1.38809 * 119.99889 * 179.97438 * 10 9 8 13 13 N 1.31618 * 119.99865 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99834 * 179.72055 * 12 10 9 15 15 H 1.48500 * 109.47163 * 270.28221 * 14 12 10 16 16 H 1.48504 * 109.46829 * 30.28110 * 14 12 10 17 17 H 1.48497 * 109.47217 * 150.27655 * 14 12 10 18 18 N 1.46896 * 109.46861 * 60.00168 * 7 6 5 19 19 C 1.46901 * 111.00174 * 57.39597 * 18 7 6 20 20 C 1.46907 * 110.99793 * 181.35201 * 18 7 6 21 21 C 1.52999 * 109.46865 * 240.00086 * 2 1 3 22 22 H 1.09004 * 109.47659 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47456 * 300.00123 * 1 2 3 24 24 H 1.09008 * 109.46957 * 59.99674 * 1 2 3 25 25 H 1.09005 * 109.47058 * 299.99954 * 4 2 1 26 26 H 1.08999 * 109.47591 * 59.99273 * 4 2 1 27 27 H 1.09003 * 109.46836 * 59.99892 * 5 4 2 28 28 H 1.09000 * 109.47458 * 179.97438 * 5 4 2 29 29 H 1.09003 * 109.47083 * 299.99673 * 6 5 4 30 30 H 1.08999 * 109.47495 * 179.97438 * 6 5 4 31 31 H 1.09001 * 109.46951 * 300.94518 * 8 7 6 32 32 H 1.08995 * 109.47054 * 180.94631 * 8 7 6 33 33 H 0.96999 * 120.00350 * 355.65142 * 9 8 7 34 34 H 0.96994 * 120.00163 * 359.71363 * 13 12 10 35 35 H 1.09002 * 109.46983 * 57.43695 * 19 18 7 36 36 H 1.08997 * 109.47035 * 177.43524 * 19 18 7 37 37 H 1.08994 * 109.47255 * 297.43438 * 19 18 7 38 38 H 1.08999 * 109.46870 * 60.00059 * 20 18 7 39 39 H 1.08997 * 109.46809 * 180.02562 * 20 18 7 40 40 H 1.09003 * 109.46640 * 299.99758 * 20 18 7 41 41 H 1.08993 * 109.47457 * 60.00659 * 21 2 1 42 42 H 1.09003 * 109.47529 * 300.00151 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 3.5699 -0.7220 1.2489 6 6 4.0794 -1.4434 -0.0003 7 6 3.5695 -0.7221 -1.2496 8 6 4.0785 -1.4440 -2.4989 9 7 3.5708 -2.8181 -2.5098 10 6 3.8230 -3.6328 -3.5813 11 1 4.3958 -3.2620 -4.4184 12 6 3.3423 -4.9350 -3.5914 13 7 2.6438 -5.3865 -2.5713 14 14 3.6797 -6.0437 -5.0564 15 1 2.5901 -5.8913 -6.0539 16 1 4.9748 -5.6645 -5.6763 17 1 3.7425 -7.4566 -4.6039 18 7 4.0597 0.6626 -1.2498 19 6 5.5268 0.7018 -1.1877 20 6 3.5625 1.3969 -2.4210 21 6 2.0399 -0.7212 -1.2493 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.6766 -0.2076 2.1392 26 1 1.6766 -1.7490 1.2492 27 1 3.9336 0.3056 1.2488 28 1 3.9332 -1.2355 2.1391 29 1 3.7157 -2.4710 -0.0002 30 1 5.1694 -1.4435 -0.0008 31 1 5.1684 -1.4595 -2.4908 32 1 3.7291 -0.9204 -3.3887 33 1 3.0560 -3.1510 -1.7581 34 1 2.4684 -4.8107 -1.8107 35 1 5.9410 0.1454 -2.0285 36 1 5.8650 1.7369 -1.2351 37 1 5.8631 0.2521 -0.2535 38 1 2.4727 1.4119 -2.4047 39 1 3.9407 2.4189 -2.3965 40 1 3.9056 0.9045 -3.3310 41 1 1.6767 -0.2074 -2.1392 42 1 1.6766 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040669725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:42 Heat of formation + Delta-G solvation = 3.652769 kcal Electronic energy + Delta-G solvation = -19076.194066 eV Core-core repulsion = 16476.964299 eV Total energy + Delta-G solvation = -2599.229768 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.98433 -35.73140 -34.57027 -32.14739 -31.30967 -28.99326 -27.67432 -25.65199 -25.07915 -23.78895 -22.61952 -21.47963 -19.94722 -18.08796 -17.30703 -15.57286 -15.26385 -15.02403 -14.67185 -13.83415 -13.73219 -13.63523 -13.43741 -13.28051 -12.70803 -12.56583 -12.02178 -11.92903 -11.84307 -11.73387 -11.53241 -11.07229 -10.97484 -10.88056 -10.64247 -10.55832 -10.45079 -10.09817 -10.00681 -9.70131 -9.54774 -9.20522 -8.83614 -7.89775 -6.95791 -6.08327 -3.07187 3.51878 3.56876 3.70865 4.22064 4.69566 4.94441 5.05131 5.10646 5.34336 5.45448 5.49594 5.57171 5.59987 5.62384 5.67857 5.76924 5.82015 5.89958 5.91258 5.96066 5.98964 6.08172 6.09737 6.12087 6.13649 6.27761 6.30685 6.44465 6.50152 6.51899 6.59079 6.64351 6.74720 6.77743 6.88843 7.36823 7.41456 7.83113 8.77939 9.25956 10.12035 10.27849 11.40072 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024683 B = 0.007497 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.110053 B = 3733.975245 C = 4148.081386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.077 0.923 4 C -0.109 4.109 5 C -0.110 4.110 6 C -0.103 4.103 7 C 0.106 3.894 8 C 0.135 3.865 9 N -0.735 5.735 10 C -0.330 4.330 11 H 0.062 0.938 12 C -0.045 4.045 13 N -0.944 5.944 14 Si 1.082 2.918 15 H -0.296 1.296 16 H -0.296 1.296 17 H -0.288 1.288 18 N -0.526 5.526 19 C 0.016 3.984 20 C 0.016 3.984 21 C -0.095 4.095 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.015 0.985 32 H 0.021 0.979 33 H 0.368 0.632 34 H 0.254 0.746 35 H 0.031 0.969 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.031 0.969 41 H 0.058 0.942 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.553 13.430 5.925 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.096 0.904 4 C -0.147 4.147 5 C -0.147 4.147 6 C -0.141 4.141 7 C 0.016 3.984 8 C 0.006 3.994 9 N -0.382 5.382 10 C -0.461 4.461 11 H 0.080 0.920 12 C -0.243 4.243 13 N -0.590 5.590 14 Si 0.913 3.087 15 H -0.224 1.224 16 H -0.223 1.223 17 H -0.214 1.214 18 N -0.249 5.249 19 C -0.132 4.132 20 C -0.132 4.132 21 C -0.132 4.132 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.203 0.797 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.077 0.923 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.261 12.226 5.525 13.419 hybrid contribution 0.519 1.044 -0.082 1.168 sum 0.780 13.270 5.443 14.364 Atomic orbital electron populations 1.21857 0.96231 1.01601 1.00835 1.21031 0.94076 1.00326 0.94761 0.90446 1.21530 0.95790 1.00271 0.97112 1.21423 0.95507 1.01056 0.96752 1.21560 1.00003 0.99180 0.93310 1.21211 0.95185 0.86818 0.95149 1.21203 0.96064 0.87047 0.95062 1.42338 1.65369 1.08609 1.21924 1.20057 1.32389 0.95839 0.97834 0.92039 1.25738 0.98839 0.95734 1.03964 1.70847 1.41774 1.38464 1.07877 0.83204 0.75230 0.76074 0.74181 1.22358 1.22265 1.21356 1.62334 1.08999 1.13589 1.39983 1.22457 0.88323 1.00967 1.01443 1.22462 1.01165 0.97656 0.91897 1.21585 0.93335 1.01182 0.97147 0.92848 0.93271 0.93164 0.92857 0.92446 0.91219 0.93166 0.91198 0.92332 0.96702 0.96096 0.79699 0.93442 0.95023 0.92176 0.91279 0.91220 0.92154 0.95078 0.92342 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.19 37.16 0.34 -1.55 16 2 C -0.08 -1.17 2.56 -90.62 -0.23 -1.40 16 3 H 0.08 1.09 7.61 -51.93 -0.39 0.69 16 4 C -0.11 -1.50 5.20 -26.73 -0.14 -1.64 16 5 C -0.11 -1.54 5.77 -26.74 -0.15 -1.69 16 6 C -0.10 -1.71 4.11 -26.73 -0.11 -1.82 16 7 C 0.11 1.79 0.06 -131.62 -0.01 1.79 16 8 C 0.14 2.86 4.47 -4.04 -0.02 2.85 16 9 N -0.74 -18.85 4.99 -59.91 -0.30 -19.14 16 10 C -0.33 -9.54 9.99 -15.06 -0.15 -9.69 16 11 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 12 C -0.05 -1.34 5.50 -17.43 -0.10 -1.43 16 13 N -0.94 -29.46 13.70 55.49 0.76 -28.70 16 14 Si 1.08 26.46 29.92 -169.99 -5.09 21.38 16 15 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 18 N -0.53 -7.64 3.31 -235.43 -0.78 -8.42 16 19 C 0.02 0.22 8.81 60.07 0.53 0.75 16 20 C 0.02 0.22 8.82 60.07 0.53 0.75 16 21 C -0.09 -1.59 3.41 -26.75 -0.09 -1.68 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.96 7.60 -51.93 -0.39 0.56 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.34 6.83 -51.93 -0.35 0.98 16 30 H 0.06 0.97 6.42 -51.93 -0.33 0.64 16 31 H 0.02 0.34 6.46 -51.93 -0.34 0.00 16 32 H 0.02 0.47 6.38 -51.93 -0.33 0.14 16 33 H 0.37 9.58 4.20 -40.82 -0.17 9.40 16 34 H 0.25 7.82 6.77 -40.82 -0.28 7.54 16 35 H 0.03 0.47 6.26 -51.93 -0.33 0.15 16 36 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.07 0.91 6.40 -51.93 -0.33 0.58 16 38 H 0.07 0.94 6.28 -51.93 -0.33 0.61 16 39 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 40 H 0.03 0.46 6.31 -51.93 -0.33 0.14 16 41 H 0.06 0.99 6.38 -51.93 -0.33 0.66 16 42 H 0.07 1.39 6.89 -51.93 -0.36 1.03 16 LS Contribution 304.77 15.07 4.59 4.59 Total: -1.00 -30.68 304.77 -7.58 -38.27 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.18 Total: 6.78 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 0.40 Total: -14.76 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.32 Total: -56.26 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -5.09 Total: 21.38 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.68 -7.58 -38.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040669725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.922 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds