Wall clock time and date at job start Mon Mar 30 2020 04:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47011 * 2 1 4 4 C 1.52997 * 109.47085 * 120.00578 * 2 1 3 5 5 C 1.52996 * 109.47396 * 179.97438 * 4 2 1 6 6 C 1.52992 * 109.47198 * 300.00068 * 5 4 2 7 7 C 1.53002 * 109.47495 * 59.99689 * 6 5 4 8 8 C 1.52999 * 109.47359 * 180.02562 * 7 6 5 9 9 N 1.46497 * 109.47222 * 60.94071 * 8 7 6 10 10 C 1.36942 * 119.99958 * 175.65130 * 9 8 7 11 11 H 1.08002 * 119.99664 * 359.97438 * 10 9 8 12 12 C 1.38809 * 119.99889 * 179.97438 * 10 9 8 13 13 N 1.31618 * 119.99865 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99834 * 179.72055 * 12 10 9 15 15 H 1.48500 * 109.47163 * 270.28221 * 14 12 10 16 16 H 1.48504 * 109.46829 * 30.28110 * 14 12 10 17 17 H 1.48497 * 109.47217 * 150.27655 * 14 12 10 18 18 N 1.46896 * 109.46861 * 60.00168 * 7 6 5 19 19 C 1.46901 * 111.00174 * 57.39597 * 18 7 6 20 20 C 1.46907 * 110.99793 * 181.35201 * 18 7 6 21 21 C 1.52999 * 109.46865 * 240.00086 * 2 1 3 22 22 H 1.09004 * 109.47659 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47456 * 300.00123 * 1 2 3 24 24 H 1.09008 * 109.46957 * 59.99674 * 1 2 3 25 25 H 1.09005 * 109.47058 * 299.99954 * 4 2 1 26 26 H 1.08999 * 109.47591 * 59.99273 * 4 2 1 27 27 H 1.09003 * 109.46836 * 59.99892 * 5 4 2 28 28 H 1.09000 * 109.47458 * 179.97438 * 5 4 2 29 29 H 1.09003 * 109.47083 * 299.99673 * 6 5 4 30 30 H 1.08999 * 109.47495 * 179.97438 * 6 5 4 31 31 H 1.09001 * 109.46951 * 300.94518 * 8 7 6 32 32 H 1.08995 * 109.47054 * 180.94631 * 8 7 6 33 33 H 0.96999 * 120.00350 * 355.65142 * 9 8 7 34 34 H 0.96994 * 120.00163 * 359.71363 * 13 12 10 35 35 H 1.09002 * 109.46983 * 57.43695 * 19 18 7 36 36 H 1.08997 * 109.47035 * 177.43524 * 19 18 7 37 37 H 1.08994 * 109.47255 * 297.43438 * 19 18 7 38 38 H 1.08999 * 109.46870 * 60.00059 * 20 18 7 39 39 H 1.08997 * 109.46809 * 180.02562 * 20 18 7 40 40 H 1.09003 * 109.46640 * 299.99758 * 20 18 7 41 41 H 1.08993 * 109.47457 * 60.00659 * 21 2 1 42 42 H 1.09003 * 109.47529 * 300.00151 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 3.5699 -0.7220 1.2489 6 6 4.0794 -1.4434 -0.0003 7 6 3.5695 -0.7221 -1.2496 8 6 4.0785 -1.4440 -2.4989 9 7 3.5708 -2.8181 -2.5098 10 6 3.8230 -3.6328 -3.5813 11 1 4.3958 -3.2620 -4.4184 12 6 3.3423 -4.9350 -3.5914 13 7 2.6438 -5.3865 -2.5713 14 14 3.6797 -6.0437 -5.0564 15 1 2.5901 -5.8913 -6.0539 16 1 4.9748 -5.6645 -5.6763 17 1 3.7425 -7.4566 -4.6039 18 7 4.0597 0.6626 -1.2498 19 6 5.5268 0.7018 -1.1877 20 6 3.5625 1.3969 -2.4210 21 6 2.0399 -0.7212 -1.2493 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.6766 -0.2076 2.1392 26 1 1.6766 -1.7490 1.2492 27 1 3.9336 0.3056 1.2488 28 1 3.9332 -1.2355 2.1391 29 1 3.7157 -2.4710 -0.0002 30 1 5.1694 -1.4435 -0.0008 31 1 5.1684 -1.4595 -2.4908 32 1 3.7291 -0.9204 -3.3887 33 1 3.0560 -3.1510 -1.7581 34 1 2.4684 -4.8107 -1.8107 35 1 5.9410 0.1454 -2.0285 36 1 5.8650 1.7369 -1.2351 37 1 5.8631 0.2521 -0.2535 38 1 2.4727 1.4119 -2.4047 39 1 3.9407 2.4189 -2.3965 40 1 3.9056 0.9045 -3.3310 41 1 1.6767 -0.2074 -2.1392 42 1 1.6766 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040669725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:41 Heat of formation + Delta-G solvation = -15.087661 kcal Electronic energy + Delta-G solvation = -19077.006712 eV Core-core repulsion = 16476.964299 eV Total energy + Delta-G solvation = -2600.042414 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.32963 -37.01373 -36.47412 -33.52747 -33.04304 -30.61188 -28.81468 -26.96796 -26.75223 -25.29482 -24.43806 -22.70139 -21.21017 -19.53391 -19.33436 -17.14455 -16.86535 -16.27077 -15.98860 -15.62666 -15.23424 -15.14858 -14.81372 -14.69518 -14.33618 -13.72463 -13.30536 -13.15941 -13.10476 -12.98716 -12.87272 -12.74954 -12.61178 -12.20439 -12.09469 -12.01717 -11.91429 -11.73003 -11.41288 -11.29785 -11.02907 -10.93053 -10.75229 -9.22031 -9.12689 -8.44313 -5.37931 1.53613 1.64649 1.79231 2.66041 2.97199 3.34059 3.65171 3.75100 3.84989 3.88328 4.20991 4.23392 4.29111 4.37327 4.43515 4.46043 4.62762 4.65651 4.65766 4.70671 4.79066 4.83748 4.92368 4.97020 4.98191 4.98952 5.04662 5.10713 5.19006 5.20050 5.31351 5.39592 5.46343 5.48512 5.51063 5.70585 6.09811 6.16025 6.44500 7.04934 7.95343 8.07107 9.06579 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024683 B = 0.007497 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.110053 B = 3733.975245 C = 4148.081386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 H 0.088 0.912 4 C -0.109 4.109 5 C -0.101 4.101 6 C -0.100 4.100 7 C 0.117 3.883 8 C 0.137 3.863 9 N -0.745 5.745 10 C -0.338 4.338 11 H 0.059 0.941 12 C -0.101 4.101 13 N -0.970 5.970 14 Si 1.130 2.870 15 H -0.283 1.283 16 H -0.276 1.276 17 H -0.289 1.289 18 N -0.515 5.515 19 C 0.015 3.985 20 C 0.016 3.984 21 C -0.090 4.090 22 H 0.038 0.962 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.007 0.993 32 H 0.012 0.988 33 H 0.364 0.636 34 H 0.243 0.757 35 H 0.012 0.988 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.012 0.988 41 H 0.052 0.948 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.820 15.319 6.433 16.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.093 4.093 3 H 0.107 0.893 4 C -0.147 4.147 5 C -0.138 4.138 6 C -0.138 4.138 7 C 0.027 3.973 8 C 0.009 3.991 9 N -0.391 5.391 10 C -0.470 4.470 11 H 0.077 0.923 12 C -0.292 4.292 13 N -0.618 5.618 14 Si 0.955 3.045 15 H -0.210 1.210 16 H -0.201 1.201 17 H -0.215 1.215 18 N -0.238 5.238 19 C -0.133 4.133 20 C -0.132 4.132 21 C -0.128 4.128 22 H 0.057 0.943 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.024 0.976 32 H 0.030 0.970 33 H 0.198 0.802 34 H 0.053 0.947 35 H 0.031 0.969 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.541 14.168 6.038 15.411 hybrid contribution 0.478 0.522 -0.260 0.754 sum 1.019 14.691 5.779 15.819 Atomic orbital electron populations 1.21837 0.95176 1.01119 1.02154 1.20979 0.94940 1.00196 0.93179 0.89338 1.21550 0.95545 0.99616 0.97984 1.21375 0.95665 1.01318 0.95447 1.21507 0.99833 0.97715 0.94791 1.21016 0.95295 0.87915 0.93063 1.21338 0.95325 0.85297 0.97173 1.42488 1.65408 1.10118 1.21071 1.20385 1.31655 0.96506 0.98442 0.92318 1.27226 0.98547 0.97621 1.05831 1.70958 1.43659 1.38620 1.08516 0.82594 0.76303 0.74093 0.71531 1.21013 1.20102 1.21538 1.62383 1.09802 1.11320 1.40253 1.22539 0.87294 1.02567 1.00858 1.22537 1.01375 0.98771 0.90546 1.21509 0.93160 0.99361 0.98774 0.94255 0.90990 0.92816 0.90232 0.94165 0.89924 0.91965 0.94551 0.92488 0.97556 0.97036 0.80231 0.94658 0.96924 0.89303 0.90844 0.91101 0.89210 0.96926 0.92885 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.19 71.98 0.66 -2.82 16 2 C -0.07 -1.97 2.56 -10.80 -0.03 -2.00 16 3 H 0.09 2.20 7.61 -2.39 -0.02 2.18 16 4 C -0.11 -2.81 5.20 30.59 0.16 -2.65 16 5 C -0.10 -2.63 5.77 30.59 0.18 -2.46 16 6 C -0.10 -3.36 4.11 30.59 0.13 -3.23 16 7 C 0.12 3.98 0.06 3.51 0.00 3.98 16 8 C 0.14 5.97 4.47 86.38 0.39 6.35 16 9 N -0.74 -39.69 4.99 -343.46 -1.71 -41.40 16 10 C -0.34 -20.02 9.99 84.03 0.84 -19.18 16 11 H 0.06 3.44 7.83 -2.91 -0.02 3.41 16 12 C -0.10 -6.04 5.50 84.86 0.47 -5.57 16 13 N -0.97 -62.12 13.70 21.65 0.30 -61.82 16 14 Si 1.13 53.53 29.92 68.60 2.05 55.58 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 16 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 17 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 18 N -0.51 -14.07 3.31 -898.76 -2.97 -17.04 16 19 C 0.02 0.39 8.81 127.69 1.12 1.51 16 20 C 0.02 0.40 8.82 127.69 1.13 1.53 16 21 C -0.09 -3.05 3.41 30.58 0.10 -2.95 16 22 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 24 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 1.99 7.60 -2.39 -0.02 1.97 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.45 6.83 -2.39 -0.02 1.43 16 30 H 0.06 1.89 6.42 -2.39 -0.02 1.87 16 31 H 0.01 0.30 6.46 -2.39 -0.02 0.29 16 32 H 0.01 0.53 6.38 -2.39 -0.02 0.52 16 33 H 0.36 19.96 4.20 -92.71 -0.39 19.58 16 34 H 0.24 15.60 6.77 -92.71 -0.63 14.98 16 35 H 0.01 0.36 6.26 -2.39 -0.01 0.34 16 36 H 0.09 1.74 8.08 -2.39 -0.02 1.72 16 37 H 0.07 1.78 6.40 -2.39 -0.02 1.77 16 38 H 0.07 1.79 6.28 -2.39 -0.01 1.77 16 39 H 0.09 1.78 8.09 -2.39 -0.02 1.76 16 40 H 0.01 0.36 6.31 -2.39 -0.02 0.35 16 41 H 0.05 1.82 6.38 -2.39 -0.02 1.80 16 42 H 0.03 1.44 6.89 -2.39 -0.02 1.42 16 Total: -1.00 -67.03 304.77 3.54 -63.49 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.73 Total: 28.68 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 5.14 Total: -27.49 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -4.39 Total: -120.26 kcal Atomic # 14 Polarization: 53.53 SS G_CDS: 2.05 Total: 55.58 kcal Total: -67.03 3.54 -63.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040669725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.402 kcal (2) G-P(sol) polarization free energy of solvation -67.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds