Wall clock time and date at job start Mon Mar 30 2020 03:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46898 * 109.47006 * 180.02562 * 3 2 1 5 5 C 1.46954 * 111.00053 * 293.79820 * 4 3 2 6 6 C 1.53047 * 109.36866 * 176.81192 * 5 4 3 7 7 N 1.46963 * 109.36148 * 58.40296 * 6 5 4 8 8 C 1.46898 * 110.99883 * 176.81520 * 7 6 5 9 9 C 1.53001 * 109.47210 * 293.79735 * 8 7 6 10 10 C 1.52997 * 109.47371 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47282 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99816 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00136 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99879 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00237 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46838 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47390 * 119.99928 * 15 13 11 18 18 H 1.48507 * 109.46773 * 240.00136 * 15 13 11 19 19 C 1.46954 * 110.87838 * 300.68140 * 7 6 5 20 20 C 1.46961 * 110.99713 * 170.00543 * 4 3 2 21 21 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 23 23 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 25 25 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 26 26 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 27 27 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 28 28 H 1.09003 * 109.49417 * 296.78345 * 5 4 3 29 29 H 1.09006 * 109.48599 * 56.84799 * 5 4 3 30 30 H 1.09001 * 109.48810 * 298.44375 * 6 5 4 31 31 H 1.08998 * 109.49435 * 178.36811 * 6 5 4 32 32 H 1.08998 * 109.47257 * 53.79687 * 8 7 6 33 33 H 1.09006 * 109.46878 * 173.79945 * 8 7 6 34 34 H 1.08993 * 109.47126 * 300.00566 * 9 8 7 35 35 H 1.09004 * 109.46610 * 59.99971 * 9 8 7 36 36 H 1.09007 * 109.47142 * 300.00207 * 10 9 8 37 37 H 1.08996 * 109.46938 * 59.99921 * 10 9 8 38 38 H 0.97007 * 119.99836 * 180.02562 * 14 13 11 39 39 H 1.09003 * 109.49417 * 299.35132 * 19 7 6 40 40 H 1.09006 * 109.48599 * 179.28678 * 19 7 6 41 41 H 1.09003 * 109.48406 * 303.14781 * 20 4 3 42 42 H 1.08993 * 109.49093 * 63.21631 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0361 0.8887 1.2544 6 6 5.5639 0.8325 1.1822 7 7 6.0904 2.1837 0.9439 8 6 7.5594 2.1837 0.9433 9 6 8.0700 1.8394 2.3439 10 6 9.6000 1.8400 2.3435 11 6 10.1029 1.5003 3.7228 12 1 9.4014 1.3040 4.5201 13 6 11.4585 1.4410 3.9671 14 7 12.3128 1.6805 2.9962 15 14 12.0819 1.0192 5.6768 16 1 10.9273 0.7950 6.5833 17 1 12.9080 -0.2131 5.6125 18 1 12.9060 2.1412 6.1939 19 6 5.5633 2.7375 -0.3110 20 6 4.0355 2.7938 -0.2388 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.7346 1.5239 2.0873 29 1 3.6419 -0.1167 1.4021 30 1 5.8654 0.1757 0.3662 31 1 5.9586 0.4491 2.1230 32 1 7.9225 1.4421 0.2318 33 1 7.9226 3.1707 0.6566 34 1 7.7070 2.5809 3.0554 35 1 7.7067 0.8525 2.6306 36 1 9.9634 1.0986 1.6318 37 1 9.9628 2.8270 2.0569 38 1 13.2666 1.6385 3.1681 39 1 5.8648 2.1023 -1.1440 40 1 5.9576 3.7430 -0.4588 41 1 3.6408 3.1771 -1.1797 42 1 3.7339 3.4506 0.5771 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042224165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:58 Heat of formation + Delta-G solvation = -13.969665 kcal Electronic energy + Delta-G solvation = -17373.546808 eV Core-core repulsion = 14773.552874 eV Total energy + Delta-G solvation = -2599.993934 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.34271 -36.46329 -34.03013 -32.91312 -31.17838 -30.81605 -28.01133 -25.86677 -24.09064 -23.73065 -22.16195 -21.07650 -19.90288 -19.63453 -16.52150 -16.00965 -15.67532 -14.95247 -14.76520 -14.56639 -14.51544 -14.20120 -13.97435 -13.48343 -13.03720 -12.44529 -12.33471 -12.09997 -11.85297 -11.68925 -11.49570 -11.23085 -11.17311 -11.02952 -10.80501 -10.77991 -10.61295 -10.38892 -10.33030 -9.56179 -9.29092 -9.00683 -8.43246 -8.31506 -8.00678 -5.96718 -3.98537 3.33230 3.40472 3.45116 3.77973 4.17413 4.49770 4.66837 4.82671 4.90623 5.12051 5.15662 5.20682 5.34366 5.37635 5.39200 5.46262 5.48972 5.56543 5.61291 5.75311 5.79013 5.81588 5.93934 5.96706 6.01763 6.05198 6.11404 6.18387 6.36615 6.74462 6.79048 6.97091 6.98921 7.16803 7.41036 7.45574 7.72599 7.87747 8.04242 8.47768 9.09019 9.65351 11.14821 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046204 B = 0.003708 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.867615 B = 7549.730119 C = 7976.756313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.056 3.944 4 N -0.542 5.542 5 C 0.056 3.944 6 C 0.055 3.945 7 N -0.541 5.541 8 C 0.057 3.943 9 C -0.104 4.104 10 C 0.021 3.979 11 C -0.517 4.517 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.056 3.944 20 C 0.059 3.941 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.032 0.968 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.013 0.987 37 H 0.015 0.985 38 H 0.259 0.741 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.821 -0.675 -7.412 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.072 4.072 4 N -0.267 5.267 5 C -0.072 4.072 6 C -0.074 4.074 7 N -0.266 5.266 8 C -0.070 4.070 9 C -0.142 4.142 10 C -0.016 4.016 11 C -0.555 4.555 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.073 4.073 20 C -0.069 4.069 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -20.632 -0.656 -7.451 21.946 hybrid contribution 0.509 -0.192 0.873 1.029 sum -20.124 -0.848 -6.578 21.189 Atomic orbital electron populations 1.21738 0.95751 1.01700 1.01667 1.21545 0.95208 0.96513 1.02751 1.22126 0.87377 0.97152 1.00580 1.62182 1.07119 1.22292 1.35130 1.22227 0.95101 0.99776 0.90061 1.22188 0.93413 0.89998 1.01759 1.62236 1.09220 1.21789 1.33358 1.22278 0.84639 1.00713 0.99386 1.21645 0.99122 0.99998 0.93434 1.19078 0.88468 0.97102 0.96978 1.21295 0.91541 1.46797 0.95877 0.92647 1.25035 0.97108 0.95530 0.96904 1.69984 1.01929 1.50023 1.31717 0.86547 0.78846 0.77968 0.84715 1.19726 1.21058 1.21039 1.22127 0.93762 1.00052 0.91323 1.22141 0.95045 0.89129 1.00565 0.92892 0.92773 0.92582 0.91207 0.91876 0.91060 0.94985 0.94105 0.90386 0.94349 0.89549 0.95274 0.91268 0.92704 0.93505 0.96822 0.96629 0.93119 0.94364 0.90468 0.90737 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -1.04 5.87 -26.73 -0.16 -1.20 16 3 C 0.06 0.53 4.96 -3.82 -0.02 0.51 16 4 N -0.54 -6.39 4.71 -234.46 -1.10 -7.49 16 5 C 0.06 0.70 5.41 -3.77 -0.02 0.68 16 6 C 0.05 0.80 5.41 -3.77 -0.02 0.78 16 7 N -0.54 -8.57 4.71 -234.46 -1.10 -9.67 16 8 C 0.06 1.03 4.96 -3.82 -0.02 1.01 16 9 C -0.10 -2.22 5.09 -26.73 -0.14 -2.36 16 10 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 11 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 15 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 19 C 0.06 0.75 5.61 -3.77 -0.02 0.73 16 20 C 0.06 0.69 5.61 -3.76 -0.02 0.67 16 21 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 22 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.56 6.49 -51.93 -0.34 0.22 16 26 H 0.07 0.63 8.03 -51.93 -0.42 0.21 16 27 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.87 6.34 -51.93 -0.33 0.54 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.33 6.34 -51.93 -0.33 1.00 16 32 H 0.03 0.54 8.12 -51.93 -0.42 0.11 16 33 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.98 6.49 -51.93 -0.34 0.64 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 41 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -30.37 325.64 -10.22 -40.59 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -8.04 Total: -5.46 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -0.60 Total: -13.17 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -1.47 Total: -43.83 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.37 -10.22 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.619 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds