Wall clock time and date at job start Mon Mar 30 2020 03:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46898 * 109.47006 * 180.02562 * 3 2 1 5 5 C 1.46954 * 111.00053 * 293.79820 * 4 3 2 6 6 C 1.53047 * 109.36866 * 176.81192 * 5 4 3 7 7 N 1.46963 * 109.36148 * 58.40296 * 6 5 4 8 8 C 1.46898 * 110.99883 * 176.81520 * 7 6 5 9 9 C 1.53001 * 109.47210 * 293.79735 * 8 7 6 10 10 C 1.52997 * 109.47371 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47282 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99816 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00136 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99879 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00237 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46838 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47390 * 119.99928 * 15 13 11 18 18 H 1.48507 * 109.46773 * 240.00136 * 15 13 11 19 19 C 1.46954 * 110.87838 * 300.68140 * 7 6 5 20 20 C 1.46961 * 110.99713 * 170.00543 * 4 3 2 21 21 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 23 23 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 25 25 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 26 26 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 27 27 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 28 28 H 1.09003 * 109.49417 * 296.78345 * 5 4 3 29 29 H 1.09006 * 109.48599 * 56.84799 * 5 4 3 30 30 H 1.09001 * 109.48810 * 298.44375 * 6 5 4 31 31 H 1.08998 * 109.49435 * 178.36811 * 6 5 4 32 32 H 1.08998 * 109.47257 * 53.79687 * 8 7 6 33 33 H 1.09006 * 109.46878 * 173.79945 * 8 7 6 34 34 H 1.08993 * 109.47126 * 300.00566 * 9 8 7 35 35 H 1.09004 * 109.46610 * 59.99971 * 9 8 7 36 36 H 1.09007 * 109.47142 * 300.00207 * 10 9 8 37 37 H 1.08996 * 109.46938 * 59.99921 * 10 9 8 38 38 H 0.97007 * 119.99836 * 180.02562 * 14 13 11 39 39 H 1.09003 * 109.49417 * 299.35132 * 19 7 6 40 40 H 1.09006 * 109.48599 * 179.28678 * 19 7 6 41 41 H 1.09003 * 109.48406 * 303.14781 * 20 4 3 42 42 H 1.08993 * 109.49093 * 63.21631 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0361 0.8887 1.2544 6 6 5.5639 0.8325 1.1822 7 7 6.0904 2.1837 0.9439 8 6 7.5594 2.1837 0.9433 9 6 8.0700 1.8394 2.3439 10 6 9.6000 1.8400 2.3435 11 6 10.1029 1.5003 3.7228 12 1 9.4014 1.3040 4.5201 13 6 11.4585 1.4410 3.9671 14 7 12.3128 1.6805 2.9962 15 14 12.0819 1.0192 5.6768 16 1 10.9273 0.7950 6.5833 17 1 12.9080 -0.2131 5.6125 18 1 12.9060 2.1412 6.1939 19 6 5.5633 2.7375 -0.3110 20 6 4.0355 2.7938 -0.2388 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.7346 1.5239 2.0873 29 1 3.6419 -0.1167 1.4021 30 1 5.8654 0.1757 0.3662 31 1 5.9586 0.4491 2.1230 32 1 7.9225 1.4421 0.2318 33 1 7.9226 3.1707 0.6566 34 1 7.7070 2.5809 3.0554 35 1 7.7067 0.8525 2.6306 36 1 9.9634 1.0986 1.6318 37 1 9.9628 2.8270 2.0569 38 1 13.2666 1.6385 3.1681 39 1 5.8648 2.1023 -1.1440 40 1 5.9576 3.7430 -0.4588 41 1 3.6408 3.1771 -1.1797 42 1 3.7339 3.4506 0.5771 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042224165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:57 Heat of formation + Delta-G solvation = -33.546685 kcal Electronic energy + Delta-G solvation = -17374.395731 eV Core-core repulsion = 14773.552874 eV Total energy + Delta-G solvation = -2600.842857 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.41017 -37.62432 -35.71638 -34.24944 -32.81391 -31.90531 -29.39782 -27.36551 -25.29524 -24.79179 -23.79439 -21.83200 -21.63636 -20.74154 -18.51467 -17.30511 -16.63105 -16.49685 -16.13504 -15.65364 -15.59127 -15.57228 -15.19477 -14.69709 -14.29562 -13.94466 -13.61701 -13.25114 -13.20106 -12.86030 -12.73723 -12.61103 -12.46125 -12.40520 -12.23240 -12.10669 -11.87637 -11.67376 -11.43971 -11.37690 -11.23935 -11.01873 -10.55803 -9.40827 -9.23271 -8.20571 -6.31634 1.39809 1.40165 1.53912 2.40731 2.88525 2.95352 3.12518 3.89088 3.91209 4.03463 4.13708 4.20152 4.27726 4.37790 4.45391 4.48061 4.53616 4.57716 4.68378 4.71262 4.78275 4.83484 4.88487 4.90202 4.96562 4.99524 5.06632 5.11163 5.22540 5.26533 5.31530 5.43286 5.51546 5.73408 5.85306 5.98803 6.00805 6.19045 6.19934 6.28046 6.85308 7.37662 8.91684 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046204 B = 0.003708 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.867615 B = 7549.730119 C = 7976.756313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.057 3.943 4 N -0.551 5.551 5 C 0.064 3.936 6 C 0.054 3.946 7 N -0.547 5.547 8 C 0.069 3.931 9 C -0.088 4.088 10 C 0.026 3.974 11 C -0.542 4.542 12 H 0.059 0.941 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.054 3.946 20 C 0.064 3.936 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.032 0.968 28 H 0.035 0.965 29 H 0.092 0.908 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.023 0.977 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.049 0.951 36 H -0.011 1.011 37 H -0.008 1.008 38 H 0.264 0.736 39 H 0.034 0.966 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.388 -0.820 -6.961 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.070 4.070 4 N -0.276 5.276 5 C -0.064 4.064 6 C -0.074 4.074 7 N -0.272 5.272 8 C -0.059 4.059 9 C -0.126 4.126 10 C -0.012 4.012 11 C -0.580 4.580 12 H 0.077 0.923 13 C -0.199 4.199 14 N -0.575 5.575 15 Si 0.791 3.209 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.074 4.074 20 C -0.064 4.064 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.110 0.890 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.008 0.992 37 H 0.011 0.989 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.228 -0.800 -7.008 23.320 hybrid contribution 0.986 -0.141 0.679 1.206 sum -21.242 -0.941 -6.329 22.184 Atomic orbital electron populations 1.21707 0.94447 1.02243 1.02096 1.21517 0.96305 0.95707 1.02201 1.22188 0.85798 0.97941 1.01120 1.62208 1.08605 1.22305 1.34500 1.22127 0.93287 1.00607 0.90350 1.22204 0.95128 0.89231 1.00863 1.62202 1.07380 1.22562 1.35023 1.22002 0.86548 1.00418 0.96924 1.21379 0.95541 1.00098 0.95539 1.18969 0.91866 0.94807 0.95517 1.21713 0.92219 1.47123 0.96914 0.92311 1.26004 0.97327 0.95125 1.01492 1.70111 1.02435 1.50749 1.34178 0.85378 0.78418 0.77926 0.79202 1.18597 1.20266 1.20275 1.22223 0.95180 1.00132 0.89823 1.22131 0.93537 0.89163 1.01586 0.92671 0.92130 0.92029 0.91789 0.92379 0.89915 0.94951 0.94694 0.89005 0.95015 0.90644 0.95922 0.91208 0.93063 0.93237 0.99213 0.98942 0.92746 0.94778 0.89665 0.88504 0.94501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.12 -1.80 5.87 30.60 0.18 -1.63 16 3 C 0.06 0.96 4.96 86.31 0.43 1.39 16 4 N -0.55 -11.95 4.71 -895.70 -4.22 -16.17 16 5 C 0.06 1.52 5.41 86.31 0.47 1.99 16 6 C 0.05 1.56 5.41 86.31 0.47 2.03 16 7 N -0.55 -17.00 4.71 -895.70 -4.22 -21.22 16 8 C 0.07 2.51 4.96 86.30 0.43 2.94 16 9 C -0.09 -3.80 5.09 30.59 0.16 -3.64 16 10 C 0.03 1.42 4.97 29.85 0.15 1.57 16 11 C -0.54 -31.73 9.11 25.60 0.23 -31.50 16 12 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 13 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 14 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 15 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 C 0.05 1.39 5.61 86.31 0.48 1.88 16 20 C 0.06 1.36 5.61 86.31 0.48 1.85 16 21 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 22 H 0.06 0.63 8.14 -2.38 -0.02 0.62 16 23 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 0.93 6.49 -2.39 -0.02 0.91 16 26 H 0.08 1.22 8.03 -2.39 -0.02 1.20 16 27 H 0.03 0.56 8.12 -2.39 -0.02 0.54 16 28 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 1.91 6.34 -2.38 -0.02 1.89 16 30 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 2.32 6.34 -2.39 -0.02 2.30 16 32 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 33 H 0.07 2.52 8.03 -2.38 -0.02 2.50 16 34 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.05 2.10 6.49 -2.38 -0.02 2.08 16 36 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 37 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 38 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 39 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 2.03 8.07 -2.38 -0.02 2.01 16 41 H 0.10 1.65 8.07 -2.39 -0.02 1.63 16 42 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -64.65 325.64 -0.54 -65.19 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 0.94 Total: 6.56 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 4.65 Total: -23.80 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -8.15 Total: -95.02 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.65 -0.54 -65.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.644 kcal (2) G-P(sol) polarization free energy of solvation -64.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds