Wall clock time and date at job start Mon Mar 30 2020 04:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47203 * 2 1 4 4 N 1.46898 * 109.46819 * 120.00289 * 2 1 3 5 5 C 1.46904 * 110.99931 * 93.47933 * 4 2 1 6 6 C 1.50699 * 109.47613 * 70.77376 * 5 4 2 7 7 H 1.07994 * 119.99651 * 355.02212 * 6 5 4 8 8 C 1.37874 * 119.99947 * 175.02227 * 6 5 4 9 9 N 1.31510 * 120.00355 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99792 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47246 * 179.97438 * 10 8 6 12 12 H 1.48496 * 109.47229 * 59.99699 * 10 8 6 13 13 H 1.48497 * 109.47014 * 299.99767 * 10 8 6 14 14 C 1.46892 * 111.00339 * 329.52009 * 4 2 1 15 15 H 1.09000 * 109.47265 * 55.04070 * 14 4 2 16 16 C 1.53001 * 109.47087 * 295.04557 * 14 4 2 17 17 C 1.53001 * 109.47223 * 179.97438 * 16 14 4 18 18 C 1.52995 * 109.47199 * 59.99711 * 17 16 14 19 19 C 1.53001 * 109.47270 * 300.00261 * 18 17 16 20 20 C 1.52992 * 109.47325 * 59.99881 * 19 18 17 21 21 H 1.08991 * 109.47462 * 179.97438 * 20 19 18 22 22 N 1.46905 * 109.47147 * 59.99674 * 20 19 18 23 23 H 1.09003 * 109.47292 * 305.12067 * 1 2 3 24 24 H 1.09000 * 109.47245 * 65.11920 * 1 2 3 25 25 H 1.09002 * 109.47509 * 185.11770 * 1 2 3 26 26 H 1.09006 * 109.47056 * 240.00181 * 2 1 3 27 27 H 1.08998 * 109.47151 * 185.25003 * 3 2 1 28 28 H 1.09002 * 109.47650 * 305.25213 * 3 2 1 29 29 H 1.09004 * 109.46825 * 65.25322 * 3 2 1 30 30 H 1.09004 * 109.46705 * 310.77027 * 5 4 2 31 31 H 1.09004 * 109.46955 * 190.77482 * 5 4 2 32 32 H 0.97005 * 119.99830 * 0.02562 * 9 8 6 33 33 H 1.09001 * 109.47189 * 299.99925 * 16 14 4 34 34 H 1.08999 * 109.47355 * 59.99797 * 16 14 4 35 35 H 1.09000 * 109.47200 * 299.99556 * 17 16 14 36 36 H 1.09000 * 109.47375 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.46994 * 179.97438 * 18 17 16 38 38 H 1.09001 * 109.46871 * 60.00280 * 18 17 16 39 39 H 1.09000 * 109.46670 * 299.99873 * 19 18 17 40 40 H 1.09001 * 109.46750 * 180.02562 * 19 18 17 41 41 H 1.00907 * 110.99695 * 59.99963 * 22 20 19 42 42 H 1.00899 * 110.99870 * 183.95033 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0195 -0.6926 1.1994 5 6 2.2735 -2.1124 0.9207 6 6 3.4868 -2.2416 0.0363 7 1 3.9686 -1.3566 -0.3521 8 6 3.9818 -3.4898 -0.2768 9 7 3.3954 -4.5675 0.1966 10 14 5.4862 -3.6499 -1.3724 11 1 5.8147 -5.0865 -1.5554 12 1 6.6363 -2.9566 -0.7386 13 1 5.2041 -3.0340 -2.6939 14 6 1.0808 -0.5354 2.3182 15 1 0.0911 -0.8747 2.0125 16 6 1.0120 0.9385 2.7230 17 6 0.0337 1.1024 3.8879 18 6 0.5131 0.2686 5.0777 19 6 0.5819 -1.2053 4.6729 20 6 1.5602 -1.3692 3.5081 21 1 1.6096 -2.4192 3.2200 22 7 2.8939 -0.9119 3.9207 23 1 -0.3634 0.5912 0.8406 24 1 -0.3634 0.4324 -0.9323 25 1 -0.3634 -1.0236 0.0917 26 1 1.8933 -0.5138 -0.8900 27 1 3.1259 1.4439 -0.0940 28 1 1.6019 1.9828 -0.8392 29 1 1.7555 1.9284 0.9333 30 1 1.4087 -2.5439 0.4165 31 1 2.4489 -2.6409 1.8578 32 1 2.6144 -4.4843 0.7658 33 1 2.0016 1.2779 3.0287 34 1 0.6699 1.5325 1.8755 35 1 -0.9559 0.7632 3.5818 36 1 -0.0157 2.1525 4.1760 37 1 -0.1836 0.3857 5.9077 38 1 1.5027 0.6079 5.3838 39 1 -0.4077 -1.5445 4.3668 40 1 0.9231 -1.7993 5.5208 41 1 3.2329 -1.4475 4.7058 42 1 3.5436 -0.9496 3.1496 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042529966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:45 Heat of formation + Delta-G solvation = -22.092114 kcal Electronic energy + Delta-G solvation = -19202.476193 eV Core-core repulsion = 16602.130043 eV Total energy + Delta-G solvation = -2600.346150 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06232 -37.66245 -35.43121 -34.09312 -32.11934 -30.97104 -29.16513 -28.05929 -27.17131 -24.55698 -23.20499 -22.76266 -20.79195 -19.71851 -18.69428 -17.42067 -17.01217 -16.07121 -15.87751 -15.59927 -15.32687 -15.10483 -14.65229 -14.57252 -14.31891 -13.69000 -13.39073 -13.32823 -13.11255 -12.87093 -12.62063 -12.56221 -12.43140 -12.22449 -12.09127 -11.96324 -11.89202 -11.68437 -11.40819 -11.05225 -10.74508 -10.60866 -10.49641 -9.42033 -8.95427 -8.64515 -6.35768 1.51091 1.59097 1.78356 2.54324 3.10270 3.19727 3.66340 3.80056 4.00004 4.10007 4.16579 4.23679 4.38033 4.42932 4.47657 4.58337 4.60285 4.62723 4.73936 4.78486 4.85940 4.91264 4.93599 4.98773 5.00449 5.09616 5.11578 5.26374 5.33932 5.39564 5.40387 5.50314 5.60042 5.72673 5.88846 6.07100 6.29886 6.47737 6.51963 6.67160 6.75497 7.43523 8.71278 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026385 B = 0.008136 C = 0.006979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.971816 B = 3440.492289 C = 4011.056972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.075 3.925 3 C -0.137 4.137 4 N -0.517 5.517 5 C 0.193 3.807 6 C -0.587 4.587 7 H 0.051 0.949 8 C -0.039 4.039 9 N -0.940 5.940 10 Si 1.118 2.882 11 H -0.286 1.286 12 H -0.269 1.269 13 H -0.272 1.272 14 C 0.088 3.912 15 H 0.026 0.974 16 C -0.101 4.101 17 C -0.113 4.113 18 C -0.102 4.102 19 C -0.107 4.107 20 C 0.094 3.906 21 H -0.004 1.004 22 N -0.822 5.822 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.024 0.976 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.080 0.920 30 H -0.062 1.062 31 H 0.012 0.988 32 H 0.250 0.750 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.334 0.666 42 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 11.923 6.544 14.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.034 4.034 3 C -0.195 4.195 4 N -0.240 5.240 5 C 0.066 3.934 6 C -0.625 4.625 7 H 0.070 0.930 8 C -0.235 4.235 9 N -0.578 5.578 10 Si 0.940 3.060 11 H -0.211 1.211 12 H -0.195 1.195 13 H -0.198 1.198 14 C -0.021 4.021 15 H 0.044 0.956 16 C -0.138 4.138 17 C -0.151 4.151 18 C -0.139 4.139 19 C -0.145 4.145 20 C -0.019 4.019 21 H 0.014 0.986 22 N -0.352 5.352 23 H 0.099 0.901 24 H 0.089 0.911 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.099 0.901 30 H -0.044 1.044 31 H 0.030 0.970 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.145 0.855 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.055 11.755 6.123 14.186 hybrid contribution -1.531 -1.126 0.008 1.900 sum -6.586 10.630 6.130 13.926 Atomic orbital electron populations 1.22433 0.96814 1.00328 1.03291 1.21622 0.93021 0.96153 0.92617 1.22037 1.00599 0.93961 1.02854 1.62203 1.44222 1.12140 1.05481 1.19613 0.93301 0.86024 0.94433 1.22262 1.13741 0.94577 1.31949 0.93044 1.27305 1.04880 0.91966 0.99389 1.70945 1.21770 1.31339 1.33739 0.82907 0.72329 0.75981 0.74804 1.21147 1.19461 1.19775 1.21772 0.92745 0.97554 0.90025 0.95621 1.21762 1.00625 0.93386 0.98053 1.21521 0.97985 1.00532 0.95051 1.21349 1.01908 0.93222 0.97468 1.21544 0.97657 0.98765 0.96549 1.21376 0.91395 0.94001 0.95078 0.98584 1.58817 1.03671 1.60629 1.12083 0.90135 0.91099 0.95689 0.93650 0.93953 0.91473 0.90147 1.04424 0.97014 0.94098 0.91260 0.90728 0.92537 0.90369 0.91154 0.91310 0.92228 0.91731 0.85481 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.56 7.81 71.98 0.56 -5.00 16 2 C 0.07 2.86 2.59 44.91 0.12 2.98 16 3 C -0.14 -4.28 9.15 71.98 0.66 -3.62 16 4 N -0.52 -21.74 3.52 -850.41 -3.00 -24.74 16 5 C 0.19 10.15 3.50 85.56 0.30 10.45 16 6 C -0.59 -33.54 8.33 25.60 0.21 -33.32 16 7 H 0.05 2.94 7.66 -2.91 -0.02 2.91 16 8 C -0.04 -2.24 5.46 84.65 0.46 -1.78 16 9 N -0.94 -58.71 13.65 21.45 0.29 -58.41 16 10 Si 1.12 51.16 29.90 68.60 2.05 53.21 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 14 C 0.09 3.10 1.20 44.92 0.05 3.15 16 15 H 0.03 0.96 5.90 -2.39 -0.01 0.95 16 16 C -0.10 -2.87 3.40 30.59 0.10 -2.76 16 17 C -0.11 -2.58 5.92 30.59 0.18 -2.40 16 18 C -0.10 -2.36 5.77 30.59 0.18 -2.18 16 19 C -0.11 -2.92 5.61 30.59 0.17 -2.74 16 20 C 0.09 3.27 2.48 44.91 0.11 3.39 16 21 H 0.00 -0.15 6.01 -2.39 -0.01 -0.17 16 22 N -0.82 -27.63 7.72 -168.69 -1.30 -28.93 16 23 H 0.08 2.29 4.98 -2.39 -0.01 2.28 16 24 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.02 0.91 7.47 -2.39 -0.02 0.89 16 26 H 0.05 2.07 6.94 -2.38 -0.02 2.05 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 2.26 4.51 -2.38 -0.01 2.25 16 30 H -0.06 -3.62 7.90 -2.38 -0.02 -3.63 16 31 H 0.01 0.67 5.01 -2.39 -0.01 0.65 16 32 H 0.25 15.93 7.19 -92.70 -0.67 15.27 16 33 H 0.07 2.17 7.60 -2.39 -0.02 2.15 16 34 H 0.07 1.99 3.76 -2.39 -0.01 1.98 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.71 7.60 -2.39 -0.02 1.69 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.33 10.09 9.04 -89.69 -0.81 9.28 16 42 H 0.34 13.66 8.06 -89.69 -0.72 12.94 16 Total: -1.00 -63.74 302.10 0.74 -63.00 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -0.42 Total: 29.70 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 3.11 Total: -33.84 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -4.01 Total: -112.08 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 2.05 Total: 53.21 kcal Total: -63.74 0.74 -63.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042529966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.912 kcal (2) G-P(sol) polarization free energy of solvation -63.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds