Wall clock time and date at job start Mon Mar 30 2020 04:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47124 * 2 1 4 4 N 1.46900 * 109.46839 * 120.00116 * 2 1 3 5 5 C 1.46900 * 111.00439 * 33.03289 * 4 2 1 6 6 C 1.50702 * 109.47064 * 64.99067 * 5 4 2 7 7 H 1.08000 * 119.99752 * 356.37354 * 6 5 4 8 8 C 1.37878 * 120.00141 * 176.37249 * 6 5 4 9 9 N 1.31516 * 119.99874 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99807 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46883 * 90.00267 * 10 8 6 12 12 H 1.48499 * 109.46930 * 209.99853 * 10 8 6 13 13 H 1.48495 * 109.47165 * 330.00048 * 10 8 6 14 14 C 1.46900 * 110.99899 * 269.07975 * 4 2 1 15 15 H 1.09009 * 109.47022 * 311.90465 * 14 4 2 16 16 C 1.52998 * 109.47237 * 71.90661 * 14 4 2 17 17 C 1.53006 * 109.46973 * 180.02562 * 16 14 4 18 18 C 1.52998 * 109.47090 * 299.99682 * 17 16 14 19 19 C 1.53010 * 109.47245 * 59.99893 * 18 17 16 20 20 C 1.53000 * 109.47309 * 300.00337 * 19 18 17 21 21 H 1.09000 * 109.46909 * 299.99684 * 20 19 18 22 22 N 1.46890 * 109.46970 * 179.97438 * 20 19 18 23 23 H 1.08997 * 109.47382 * 290.93953 * 1 2 3 24 24 H 1.08994 * 109.47092 * 50.94512 * 1 2 3 25 25 H 1.09006 * 109.46846 * 170.94455 * 1 2 3 26 26 H 1.08998 * 109.47092 * 239.99765 * 2 1 3 27 27 H 1.08998 * 109.46920 * 173.05674 * 3 2 1 28 28 H 1.08998 * 109.46983 * 293.06582 * 3 2 1 29 29 H 1.09002 * 109.46962 * 53.06057 * 3 2 1 30 30 H 1.09004 * 109.47309 * 184.98892 * 5 4 2 31 31 H 1.08999 * 109.46882 * 304.99392 * 5 4 2 32 32 H 0.96994 * 119.99776 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.46910 * 59.99859 * 16 14 4 34 34 H 1.09002 * 109.47062 * 299.99533 * 16 14 4 35 35 H 1.09000 * 109.47206 * 59.99748 * 17 16 14 36 36 H 1.08998 * 109.46676 * 180.02562 * 17 16 14 37 37 H 1.08991 * 109.47523 * 180.02562 * 18 17 16 38 38 H 1.09007 * 109.47098 * 300.00789 * 18 17 16 39 39 H 1.09007 * 109.46341 * 60.00433 * 19 18 17 40 40 H 1.08991 * 109.46923 * 179.97438 * 19 18 17 41 41 H 1.00907 * 111.00171 * 60.00168 * 22 20 19 42 42 H 1.00901 * 111.00218 * 183.95098 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.1111 -1.7798 1.5874 6 6 1.1052 -2.8368 0.5133 7 1 1.6693 -2.6865 -0.3953 8 6 0.3796 -3.9957 0.6905 9 7 0.3748 -4.9184 -0.2467 10 14 -0.5955 -4.2559 2.2624 11 1 -1.9685 -3.7174 2.0880 12 1 -0.6681 -5.7079 2.5652 13 1 0.0747 -3.5493 3.3834 14 6 2.2158 0.2505 2.3086 15 1 2.7756 1.1163 1.9546 16 6 0.8544 0.7051 2.8384 17 6 1.0589 1.6878 3.9932 18 6 1.8393 1.0007 5.1155 19 6 3.2008 0.5459 4.5857 20 6 2.9964 -0.4367 3.4309 21 1 2.4368 -1.3024 3.7852 22 7 4.3034 -0.8728 2.9219 23 1 -0.3634 0.3673 0.9597 24 1 -0.3633 0.6475 -0.7980 25 1 -0.3633 -1.0149 -0.1618 26 1 1.8933 -0.5139 -0.8899 27 1 3.1229 1.4449 0.1242 28 1 1.7815 1.9192 -0.9455 29 1 1.5788 1.9909 0.8214 30 1 1.4491 -2.2180 2.5265 31 1 0.1034 -1.3838 1.7130 32 1 -0.1354 -5.7338 -0.1219 33 1 0.2948 -0.1607 3.1923 34 1 0.2986 1.1951 2.0389 35 1 1.6184 2.5535 3.6388 36 1 0.0889 2.0113 4.3709 37 1 1.9845 1.7005 5.9383 38 1 1.2797 0.1348 5.4698 39 1 3.7603 1.4117 4.2314 40 1 3.7568 0.0568 5.3853 41 1 4.8388 -1.3300 3.6448 42 1 4.1966 -1.4723 2.1173 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042529967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:48 Heat of formation + Delta-G solvation = 2.728012 kcal Electronic energy + Delta-G solvation = -19332.079392 eV Core-core repulsion = 16732.809524 eV Total energy + Delta-G solvation = -2599.269868 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.79588 -36.34377 -33.23481 -32.65375 -30.86073 -29.61705 -28.14999 -26.45410 -25.93762 -22.17940 -21.85174 -21.48091 -19.59041 -18.13486 -16.72688 -15.76938 -15.17465 -14.84628 -14.47040 -14.31963 -13.97904 -13.67224 -13.50771 -13.24506 -12.56979 -12.39896 -12.18975 -11.76043 -11.43407 -11.32814 -11.27591 -11.13057 -10.97604 -10.75260 -10.69635 -10.44841 -10.34065 -10.16167 -9.88553 -9.70928 -9.48122 -9.07894 -8.58145 -8.11611 -7.17187 -6.05435 -4.00989 3.24991 3.33429 3.34635 4.40392 4.69990 4.78996 4.97301 5.17426 5.28300 5.32938 5.45341 5.57955 5.63936 5.71959 5.73970 5.77565 5.79696 5.91294 5.97281 6.08804 6.14359 6.24494 6.26460 6.33862 6.38326 6.39020 6.41966 6.46976 6.58574 6.76103 6.81815 6.96609 7.09112 7.20972 7.64404 7.72041 8.01728 8.06652 8.17137 8.69906 9.05083 9.57231 11.07799 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.009728 C = 0.008542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.995785 B = 2877.475195 C = 3277.156757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.094 3.906 3 C -0.157 4.157 4 N -0.515 5.515 5 C 0.153 3.847 6 C -0.501 4.501 7 H 0.079 0.921 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.869 3.131 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.084 3.916 15 H 0.088 0.912 16 C -0.164 4.164 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.110 4.110 20 C 0.101 3.899 21 H 0.033 0.967 22 N -0.842 5.842 23 H 0.054 0.946 24 H 0.039 0.961 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.023 0.977 31 H -0.004 1.004 32 H 0.262 0.738 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.326 0.674 42 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 12.267 7.830 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.014 4.014 3 C -0.214 4.214 4 N -0.237 5.237 5 C 0.027 3.973 6 C -0.539 4.539 7 H 0.097 0.903 8 C -0.133 4.133 9 N -0.540 5.540 10 Si 0.697 3.303 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.025 4.025 15 H 0.106 0.894 16 C -0.203 4.203 17 C -0.153 4.153 18 C -0.157 4.157 19 C -0.148 4.148 20 C -0.011 4.011 21 H 0.051 0.949 22 N -0.373 5.373 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.014 0.986 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.136 0.864 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.842 12.623 7.500 14.956 hybrid contribution -1.835 -1.009 1.282 2.455 sum 1.008 11.614 8.782 14.595 Atomic orbital electron populations 1.22743 0.97800 1.03835 1.00384 1.21417 0.92876 0.92252 0.94891 1.22205 1.01424 0.96991 1.00776 1.62387 1.48962 1.09631 1.02731 1.20357 0.90163 0.89800 0.96999 1.21036 1.29100 1.00152 1.03604 0.90258 1.24886 0.96479 0.95957 0.95981 1.69892 1.42226 1.08438 1.33448 0.86955 0.80965 0.77429 0.84958 1.20376 1.21293 1.19349 1.21887 0.93663 0.95808 0.91156 0.89373 1.22626 0.99947 0.99531 0.98245 1.21498 0.99469 0.98338 0.95968 1.21523 0.96425 1.00064 0.97647 1.21546 0.96567 0.99550 0.97183 1.21275 0.90190 0.96048 0.93605 0.94905 1.58730 1.17043 1.49754 1.11749 0.92766 0.94206 0.89654 0.90269 0.92108 0.93251 0.92894 0.95914 0.98648 0.92783 0.91679 0.90657 0.92238 0.92671 0.92353 0.92332 0.91482 0.92632 0.86356 0.82387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.52 7.57 37.16 0.28 -3.24 16 2 C 0.09 1.74 2.82 -67.71 -0.19 1.55 16 3 C -0.16 -2.36 7.75 37.16 0.29 -2.07 16 4 N -0.51 -10.14 3.93 -220.14 -0.87 -11.01 16 5 C 0.15 3.52 2.26 -4.98 -0.01 3.51 16 6 C -0.50 -13.66 8.05 -34.44 -0.28 -13.93 16 7 H 0.08 2.38 7.47 -52.49 -0.39 1.99 16 8 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 9 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 10 Si 0.87 21.35 27.54 -169.99 -4.68 16.67 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.39 6.44 56.52 0.36 -6.02 16 14 C 0.08 1.41 1.34 -67.71 -0.09 1.32 16 15 H 0.09 1.45 5.40 -51.92 -0.28 1.17 16 16 C -0.16 -2.57 3.41 -26.73 -0.09 -2.66 16 17 C -0.11 -1.47 5.92 -26.73 -0.16 -1.62 16 18 C -0.12 -1.48 5.92 -26.73 -0.16 -1.63 16 19 C -0.11 -1.47 5.50 -26.73 -0.15 -1.61 16 20 C 0.10 1.63 2.61 -67.71 -0.18 1.45 16 21 H 0.03 0.62 6.45 -51.93 -0.34 0.28 16 22 N -0.84 -13.37 9.25 -4.67 -0.04 -13.41 16 23 H 0.05 0.96 4.18 -51.93 -0.22 0.74 16 24 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 25 H 0.08 1.88 6.06 -51.93 -0.31 1.57 16 26 H 0.08 1.63 7.69 -51.93 -0.40 1.23 16 27 H 0.06 0.92 7.50 -51.93 -0.39 0.53 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.75 5.48 -51.93 -0.28 0.47 16 30 H 0.02 0.55 5.01 -51.93 -0.26 0.29 16 31 H 0.00 -0.09 4.27 -51.93 -0.22 -0.31 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.06 1.15 6.52 -51.93 -0.34 0.82 16 34 H 0.08 1.17 4.14 -51.93 -0.22 0.96 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.33 4.52 9.04 -39.29 -0.36 4.17 16 42 H 0.36 6.48 8.30 -39.29 -0.33 6.15 16 LS Contribution 294.89 15.07 4.44 4.44 Total: -1.00 -28.33 294.89 -8.09 -36.42 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -6.88 Total: 10.45 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -0.83 Total: -17.11 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.14 Total: -50.88 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.68 Total: 16.67 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.33 -8.09 -36.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042529967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.149 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds