Wall clock time and date at job start Mon Mar 30 2020 04:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47124 * 2 1 4 4 N 1.46900 * 109.46839 * 120.00116 * 2 1 3 5 5 C 1.46900 * 111.00439 * 33.03289 * 4 2 1 6 6 C 1.50702 * 109.47064 * 64.99067 * 5 4 2 7 7 H 1.08000 * 119.99752 * 356.37354 * 6 5 4 8 8 C 1.37878 * 120.00141 * 176.37249 * 6 5 4 9 9 N 1.31516 * 119.99874 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99807 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46883 * 90.00267 * 10 8 6 12 12 H 1.48499 * 109.46930 * 209.99853 * 10 8 6 13 13 H 1.48495 * 109.47165 * 330.00048 * 10 8 6 14 14 C 1.46900 * 110.99899 * 269.07975 * 4 2 1 15 15 H 1.09009 * 109.47022 * 311.90465 * 14 4 2 16 16 C 1.52998 * 109.47237 * 71.90661 * 14 4 2 17 17 C 1.53006 * 109.46973 * 180.02562 * 16 14 4 18 18 C 1.52998 * 109.47090 * 299.99682 * 17 16 14 19 19 C 1.53010 * 109.47245 * 59.99893 * 18 17 16 20 20 C 1.53000 * 109.47309 * 300.00337 * 19 18 17 21 21 H 1.09000 * 109.46909 * 299.99684 * 20 19 18 22 22 N 1.46890 * 109.46970 * 179.97438 * 20 19 18 23 23 H 1.08997 * 109.47382 * 290.93953 * 1 2 3 24 24 H 1.08994 * 109.47092 * 50.94512 * 1 2 3 25 25 H 1.09006 * 109.46846 * 170.94455 * 1 2 3 26 26 H 1.08998 * 109.47092 * 239.99765 * 2 1 3 27 27 H 1.08998 * 109.46920 * 173.05674 * 3 2 1 28 28 H 1.08998 * 109.46983 * 293.06582 * 3 2 1 29 29 H 1.09002 * 109.46962 * 53.06057 * 3 2 1 30 30 H 1.09004 * 109.47309 * 184.98892 * 5 4 2 31 31 H 1.08999 * 109.46882 * 304.99392 * 5 4 2 32 32 H 0.96994 * 119.99776 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.46910 * 59.99859 * 16 14 4 34 34 H 1.09002 * 109.47062 * 299.99533 * 16 14 4 35 35 H 1.09000 * 109.47206 * 59.99748 * 17 16 14 36 36 H 1.08998 * 109.46676 * 180.02562 * 17 16 14 37 37 H 1.08991 * 109.47523 * 180.02562 * 18 17 16 38 38 H 1.09007 * 109.47098 * 300.00789 * 18 17 16 39 39 H 1.09007 * 109.46341 * 60.00433 * 19 18 17 40 40 H 1.08991 * 109.46923 * 179.97438 * 19 18 17 41 41 H 1.00907 * 111.00171 * 60.00168 * 22 20 19 42 42 H 1.00901 * 111.00218 * 183.95098 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.1111 -1.7798 1.5874 6 6 1.1052 -2.8368 0.5133 7 1 1.6693 -2.6865 -0.3953 8 6 0.3796 -3.9957 0.6905 9 7 0.3748 -4.9184 -0.2467 10 14 -0.5955 -4.2559 2.2624 11 1 -1.9685 -3.7174 2.0880 12 1 -0.6681 -5.7079 2.5652 13 1 0.0747 -3.5493 3.3834 14 6 2.2158 0.2505 2.3086 15 1 2.7756 1.1163 1.9546 16 6 0.8544 0.7051 2.8384 17 6 1.0589 1.6878 3.9932 18 6 1.8393 1.0007 5.1155 19 6 3.2008 0.5459 4.5857 20 6 2.9964 -0.4367 3.4309 21 1 2.4368 -1.3024 3.7852 22 7 4.3034 -0.8728 2.9219 23 1 -0.3634 0.3673 0.9597 24 1 -0.3633 0.6475 -0.7980 25 1 -0.3633 -1.0149 -0.1618 26 1 1.8933 -0.5139 -0.8899 27 1 3.1229 1.4449 0.1242 28 1 1.7815 1.9192 -0.9455 29 1 1.5788 1.9909 0.8214 30 1 1.4491 -2.2180 2.5265 31 1 0.1034 -1.3838 1.7130 32 1 -0.1354 -5.7338 -0.1219 33 1 0.2948 -0.1607 3.1923 34 1 0.2986 1.1951 2.0389 35 1 1.6184 2.5535 3.6388 36 1 0.0889 2.0113 4.3709 37 1 1.9845 1.7005 5.9383 38 1 1.2797 0.1348 5.4698 39 1 3.7603 1.4117 4.2314 40 1 3.7568 0.0568 5.3853 41 1 4.8388 -1.3300 3.6448 42 1 4.1966 -1.4723 2.1173 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042529967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:48 Heat of formation + Delta-G solvation = -17.535291 kcal Electronic energy + Delta-G solvation = -19332.958075 eV Core-core repulsion = 16732.809524 eV Total energy + Delta-G solvation = -2600.148551 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.18407 -37.67380 -34.82589 -34.37211 -32.37494 -31.12307 -29.52366 -27.80368 -27.59579 -23.93980 -23.17485 -22.70239 -20.82061 -19.73178 -18.74498 -17.20800 -16.51317 -16.32766 -16.18625 -15.57363 -15.44946 -15.09110 -14.89247 -14.67183 -14.46011 -13.74322 -13.49604 -13.12083 -13.01053 -12.87064 -12.66380 -12.59849 -12.44727 -12.11481 -11.99897 -11.86951 -11.81346 -11.60555 -11.49619 -11.37477 -11.13350 -10.77580 -10.57784 -9.44921 -8.75298 -8.27194 -6.26604 1.28142 1.30078 1.39438 2.31299 3.05204 3.27124 3.59965 3.84528 4.04706 4.18042 4.23027 4.24837 4.34332 4.45110 4.52935 4.57003 4.60072 4.65992 4.77834 4.81328 4.89032 4.94372 4.96484 5.01314 5.11866 5.17598 5.22283 5.25412 5.29476 5.30564 5.40123 5.50226 5.56712 5.59603 5.65976 6.09705 6.40104 6.53136 6.74491 6.78660 6.82853 7.35588 8.89668 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.009728 C = 0.008542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.995785 B = 2877.475195 C = 3277.156757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.090 3.910 3 C -0.144 4.144 4 N -0.528 5.528 5 C 0.174 3.826 6 C -0.496 4.496 7 H 0.036 0.964 8 C 0.010 3.990 9 N -0.949 5.949 10 Si 0.935 3.065 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.256 1.256 14 C 0.086 3.914 15 H 0.100 0.900 16 C -0.162 4.162 17 C -0.110 4.110 18 C -0.117 4.117 19 C -0.103 4.103 20 C 0.098 3.902 21 H 0.004 0.996 22 N -0.840 5.840 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.014 0.986 31 H -0.002 1.002 32 H 0.264 0.736 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.337 0.663 42 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 14.898 10.065 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.018 4.018 3 C -0.201 4.201 4 N -0.250 5.250 5 C 0.047 3.953 6 C -0.534 4.534 7 H 0.055 0.945 8 C -0.187 4.187 9 N -0.590 5.590 10 Si 0.760 3.240 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.180 1.180 14 C -0.022 4.022 15 H 0.118 0.882 16 C -0.201 4.201 17 C -0.148 4.148 18 C -0.155 4.155 19 C -0.141 4.141 20 C -0.014 4.014 21 H 0.022 0.978 22 N -0.369 5.369 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.032 0.968 31 H 0.015 0.985 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.149 0.851 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.688 15.285 9.756 18.332 hybrid contribution -1.701 -1.811 0.490 2.532 sum 0.987 13.474 10.247 16.956 Atomic orbital electron populations 1.22624 0.97709 1.01705 1.01924 1.21413 0.92979 0.94226 0.93209 1.22080 1.01352 0.94169 1.02492 1.62211 1.48104 1.10356 1.04340 1.19975 0.90865 0.89797 0.94704 1.21227 1.27636 1.01375 1.03174 0.94521 1.25713 0.97834 0.95747 0.99416 1.70046 1.43879 1.09256 1.35850 0.85896 0.79695 0.77474 0.80981 1.19359 1.20990 1.17964 1.21971 0.94739 0.95297 0.90237 0.88235 1.22555 0.98527 0.99447 0.99550 1.21486 1.00692 0.97829 0.94760 1.21539 0.95436 1.00254 0.98295 1.21503 0.97572 0.98922 0.96116 1.21351 0.89729 0.95838 0.94460 0.97836 1.58772 1.17086 1.49422 1.11631 0.91529 0.91924 0.93915 0.93575 0.92045 0.91399 0.91322 0.96776 0.98475 0.92731 0.94116 0.90486 0.90606 0.91196 0.89673 0.93457 0.90645 0.91600 0.85117 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.70 7.57 71.98 0.54 -6.15 16 2 C 0.09 3.35 2.82 44.91 0.13 3.47 16 3 C -0.14 -3.99 7.75 71.98 0.56 -3.44 16 4 N -0.53 -20.89 3.93 -850.38 -3.34 -24.24 16 5 C 0.17 8.13 2.26 85.56 0.19 8.32 16 6 C -0.50 -28.24 8.05 25.60 0.21 -28.04 16 7 H 0.04 2.35 7.47 -2.91 -0.02 2.33 16 8 C 0.01 0.56 5.47 84.65 0.46 1.03 16 9 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 10 Si 0.93 44.76 27.54 68.60 1.89 46.65 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 13 H -0.26 -11.59 6.44 99.48 0.64 -10.95 16 14 C 0.09 2.74 1.34 44.92 0.06 2.80 16 15 H 0.10 2.98 5.40 -2.38 -0.01 2.97 16 16 C -0.16 -4.67 3.41 30.60 0.10 -4.57 16 17 C -0.11 -2.37 5.92 30.60 0.18 -2.19 16 18 C -0.12 -2.49 5.92 30.60 0.18 -2.31 16 19 C -0.10 -2.42 5.50 30.60 0.17 -2.25 16 20 C 0.10 3.04 2.61 44.92 0.12 3.16 16 21 H 0.00 0.14 6.45 -2.39 -0.02 0.12 16 22 N -0.84 -25.88 9.25 -168.69 -1.56 -27.44 16 23 H 0.07 2.27 4.18 -2.39 -0.01 2.26 16 24 H 0.06 1.98 8.12 -2.39 -0.02 1.96 16 25 H 0.04 1.93 6.06 -2.38 -0.01 1.91 16 26 H 0.05 1.99 7.69 -2.39 -0.02 1.97 16 27 H 0.06 1.71 7.50 -2.39 -0.02 1.70 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.70 5.48 -2.39 -0.01 1.69 16 30 H 0.01 0.70 5.01 -2.39 -0.01 0.69 16 31 H 0.00 -0.10 4.27 -2.39 -0.01 -0.11 16 32 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.04 1.38 6.52 -2.39 -0.02 1.36 16 34 H 0.08 2.18 4.14 -2.39 -0.01 2.17 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.34 8.98 9.04 -89.69 -0.81 8.16 16 42 H 0.35 12.52 8.30 -89.69 -0.74 11.77 16 Total: -1.00 -63.76 294.89 -0.41 -64.16 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: -0.60 Total: 30.35 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 2.90 Total: -30.16 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -4.60 Total: -111.00 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.89 Total: 46.65 kcal Total: -63.76 -0.41 -64.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042529967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.629 kcal (2) G-P(sol) polarization free energy of solvation -63.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds