Wall clock time and date at job start Mon Mar 30 2020 03:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46981 * 2 1 4 4 N 1.46905 * 109.46903 * 119.99768 * 2 1 3 5 5 C 1.46897 * 111.00068 * 73.14205 * 4 2 1 6 6 C 1.50703 * 109.47093 * 66.04059 * 5 4 2 7 7 H 1.08002 * 120.00242 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99812 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00253 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99851 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46985 * 90.00312 * 10 8 6 12 12 H 1.48500 * 109.47516 * 210.00102 * 10 8 6 13 13 H 1.48501 * 109.47490 * 330.00777 * 10 8 6 14 14 C 1.46897 * 110.99978 * 309.18861 * 4 2 1 15 15 C 1.53003 * 109.47143 * 199.87388 * 14 4 2 16 16 C 1.52999 * 109.47372 * 174.79589 * 15 14 4 17 17 N 1.46894 * 109.46961 * 180.02562 * 16 15 14 18 18 C 1.46903 * 111.00048 * 180.02562 * 17 16 15 19 19 C 1.52997 * 117.49918 * 223.75122 * 18 17 16 20 20 C 1.52998 * 117.50447 * 155.08639 * 18 17 16 21 21 H 1.08997 * 109.47328 * 300.00173 * 1 2 3 22 22 H 1.09002 * 109.46974 * 60.00064 * 1 2 3 23 23 H 1.09000 * 109.47283 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47328 * 239.99827 * 2 1 3 25 25 H 1.09005 * 109.46795 * 174.42226 * 3 2 1 26 26 H 1.08994 * 109.47393 * 294.42260 * 3 2 1 27 27 H 1.08997 * 109.46835 * 54.42504 * 3 2 1 28 28 H 1.08998 * 109.47527 * 186.04325 * 5 4 2 29 29 H 1.09001 * 109.47052 * 306.04500 * 5 4 2 30 30 H 0.97000 * 120.00310 * 179.97438 * 9 8 6 31 31 H 1.08996 * 109.47505 * 79.87404 * 14 4 2 32 32 H 1.08999 * 109.47453 * 319.87042 * 14 4 2 33 33 H 1.09000 * 109.47096 * 54.79465 * 15 14 4 34 34 H 1.09005 * 109.47212 * 294.80190 * 15 14 4 35 35 H 1.09000 * 109.47111 * 59.99885 * 16 15 14 36 36 H 1.09001 * 109.47001 * 299.99873 * 16 15 14 37 37 H 1.00904 * 111.00627 * 56.04811 * 17 16 15 38 38 H 1.09007 * 115.54854 * 9.41067 * 18 17 16 39 39 H 1.09003 * 117.50214 * 359.97438 * 19 18 17 40 40 H 1.09003 * 117.50016 * 145.02175 * 19 18 17 41 41 H 1.08997 * 117.50189 * 214.98200 * 20 18 17 42 42 H 1.09005 * 117.49291 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.8201 -2.1436 1.0880 6 6 2.6874 -2.6863 -0.0185 7 1 3.3235 -2.0200 -0.5823 8 6 2.6696 -4.0337 -0.3105 9 7 1.8954 -4.8452 0.3762 10 14 3.7451 -4.7065 -1.6816 11 1 5.0663 -5.0973 -1.1278 12 1 3.0909 -5.8946 -2.2863 13 1 3.9333 -3.6625 -2.7208 14 6 1.3781 -0.1645 2.4109 15 6 2.2254 -0.5216 3.6338 16 6 1.6278 0.1374 4.8786 17 7 2.4417 -0.2051 6.0524 18 6 1.8962 0.4113 7.2693 19 6 2.8866 1.0647 8.2352 20 6 2.2163 -0.2606 8.6061 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 3.1254 1.4441 0.0999 26 1 1.7605 1.9267 -0.9356 27 1 1.5974 1.9843 0.8358 28 1 2.0913 -2.6211 2.0295 29 1 0.7736 -2.3503 0.8639 30 1 1.8825 -5.7930 0.1706 31 1 0.3854 -0.6019 2.5165 32 1 1.2911 0.9193 2.3332 33 1 3.2444 -0.1635 3.4869 34 1 2.2361 -1.6037 3.7651 35 1 0.6088 -0.2207 5.0255 36 1 1.6173 1.2194 4.7473 37 1 3.4056 0.0592 5.9138 38 1 0.9165 0.8768 7.1618 39 1 3.9431 1.0369 7.9681 40 1 2.5583 1.9597 8.7636 41 1 1.4473 -0.2369 9.3781 42 1 2.8313 -1.1603 8.5826 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042529978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:23 Heat of formation + Delta-G solvation = 16.595597 kcal Electronic energy + Delta-G solvation = -17504.211635 eV Core-core repulsion = 14905.543111 eV Total energy + Delta-G solvation = -2598.668525 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.20934 -37.63794 -34.43555 -32.74086 -31.35178 -29.38782 -26.62231 -26.41262 -23.72469 -22.47869 -22.13833 -21.39910 -20.76812 -18.53635 -16.26776 -16.05766 -15.73036 -15.05947 -14.85760 -14.37647 -14.11680 -13.46228 -13.33516 -12.85107 -12.75935 -12.35024 -12.02672 -11.86443 -11.62993 -11.42369 -11.22215 -11.10383 -10.96848 -10.77645 -10.71811 -10.63502 -10.51187 -10.30518 -10.08097 -9.92476 -9.54361 -9.08028 -8.37383 -8.21799 -7.12154 -5.97238 -3.97806 3.35156 3.41119 3.44386 3.71846 4.02418 4.47153 4.80112 4.86490 4.94951 5.04639 5.37475 5.42557 5.48251 5.50764 5.54211 5.61599 5.77483 5.79699 5.82429 5.86929 6.01665 6.05461 6.07153 6.17579 6.21085 6.33096 6.34044 6.56137 6.65114 6.81299 6.83614 6.94045 7.11317 7.36519 7.42549 7.49126 7.87383 8.19892 8.31865 8.64328 9.10090 9.65924 11.13576 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.005066 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.306151 B = 5525.602898 C = 6406.072730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.080 3.920 3 C -0.139 4.139 4 N -0.530 5.530 5 C 0.190 3.810 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.058 3.942 15 C -0.111 4.111 16 C 0.064 3.936 17 N -0.659 5.659 18 C 0.025 3.975 19 C -0.210 4.210 20 C -0.174 4.174 21 H 0.045 0.955 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.032 0.968 29 H -0.007 1.007 30 H 0.260 0.740 31 H 0.025 0.975 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.027 0.973 37 H 0.343 0.657 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 12.311 9.517 15.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.029 4.029 3 C -0.197 4.197 4 N -0.254 5.254 5 C 0.065 3.935 6 C -0.544 4.544 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.071 4.071 15 C -0.150 4.150 16 C -0.065 4.065 17 N -0.288 5.288 18 C -0.086 4.086 19 C -0.249 4.249 20 C -0.212 4.212 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.110 0.890 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.011 0.989 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.163 0.837 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.041 11.592 9.634 15.109 hybrid contribution -0.120 0.209 -0.818 0.852 sum -1.161 11.801 8.816 14.776 Atomic orbital electron populations 1.22437 0.98906 1.02031 1.00447 1.21591 0.91618 0.93936 0.95784 1.21850 1.01557 0.96322 0.99949 1.62295 1.56034 1.07320 0.99715 1.19770 0.95246 0.80812 0.97640 1.21180 1.23989 0.92570 1.16649 0.92007 1.24970 0.95826 0.97026 0.96736 1.69960 1.39071 1.04024 1.40764 0.86551 0.80554 0.78426 0.82183 1.20683 1.21410 1.19928 1.21938 0.95304 0.98529 0.91358 1.21521 0.99626 1.02039 0.91766 1.22005 0.97565 0.97261 0.89667 1.60180 1.06212 1.60900 1.01557 1.22423 0.98195 1.00324 0.87631 1.23433 0.98810 0.97060 1.05624 1.23121 1.03446 0.96359 0.98292 0.93559 0.93442 0.92122 0.89019 0.92283 0.93461 0.93771 0.95012 0.98927 0.93023 0.95676 0.92429 0.91627 0.90668 0.91209 0.95469 0.83741 0.87558 0.88760 0.89029 0.88947 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.49 37.16 0.32 -2.84 16 2 C 0.08 1.53 2.76 -67.71 -0.19 1.34 16 3 C -0.14 -2.18 9.11 37.16 0.34 -1.84 16 4 N -0.53 -11.22 4.35 -228.08 -0.99 -12.21 16 5 C 0.19 4.93 4.45 -4.98 -0.02 4.90 16 6 C -0.51 -14.18 8.32 -34.44 -0.29 -14.47 16 7 H 0.06 1.72 7.22 -52.49 -0.38 1.34 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 10 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.06 1.03 3.51 -3.82 -0.01 1.02 16 15 C -0.11 -1.85 5.51 -26.73 -0.15 -1.99 16 16 C 0.06 0.87 5.54 -3.83 -0.02 0.85 16 17 N -0.66 -8.55 6.78 -106.73 -0.72 -9.28 16 18 C 0.03 0.28 6.31 -67.71 -0.43 -0.15 16 19 C -0.21 -1.95 10.23 -26.69 -0.27 -2.23 16 20 C -0.17 -1.75 10.46 -26.69 -0.28 -2.03 16 21 H 0.05 0.74 6.66 -51.93 -0.35 0.40 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 1.21 6.71 -51.93 -0.35 0.86 16 24 H 0.09 1.99 6.61 -51.93 -0.34 1.64 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.64 6.59 -51.93 -0.34 0.29 16 28 H 0.03 0.89 6.73 -51.93 -0.35 0.54 16 29 H -0.01 -0.19 6.57 -51.93 -0.34 -0.53 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.03 0.47 7.34 -51.93 -0.38 0.08 16 32 H 0.06 0.92 6.02 -51.93 -0.31 0.60 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.46 6.97 -51.93 -0.36 1.10 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.34 4.18 8.52 -39.29 -0.33 3.84 16 38 H 0.11 1.10 7.90 -51.92 -0.41 0.69 16 39 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 328.93 15.07 4.96 4.96 Total: -1.00 -29.30 328.93 -9.75 -39.06 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.61 Total: 2.80 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -1.10 Total: -15.95 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.98 Total: -47.64 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.30 -9.75 -39.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042529978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.654 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds