Wall clock time and date at job start Mon Mar 30 2020 03:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46981 * 2 1 4 4 N 1.46905 * 109.46903 * 119.99768 * 2 1 3 5 5 C 1.46897 * 111.00068 * 73.14205 * 4 2 1 6 6 C 1.50703 * 109.47093 * 66.04059 * 5 4 2 7 7 H 1.08002 * 120.00242 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99812 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00253 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99851 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46985 * 90.00312 * 10 8 6 12 12 H 1.48500 * 109.47516 * 210.00102 * 10 8 6 13 13 H 1.48501 * 109.47490 * 330.00777 * 10 8 6 14 14 C 1.46897 * 110.99978 * 309.18861 * 4 2 1 15 15 C 1.53003 * 109.47143 * 199.87388 * 14 4 2 16 16 C 1.52999 * 109.47372 * 174.79589 * 15 14 4 17 17 N 1.46894 * 109.46961 * 180.02562 * 16 15 14 18 18 C 1.46903 * 111.00048 * 180.02562 * 17 16 15 19 19 C 1.52997 * 117.49918 * 223.75122 * 18 17 16 20 20 C 1.52998 * 117.50447 * 155.08639 * 18 17 16 21 21 H 1.08997 * 109.47328 * 300.00173 * 1 2 3 22 22 H 1.09002 * 109.46974 * 60.00064 * 1 2 3 23 23 H 1.09000 * 109.47283 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47328 * 239.99827 * 2 1 3 25 25 H 1.09005 * 109.46795 * 174.42226 * 3 2 1 26 26 H 1.08994 * 109.47393 * 294.42260 * 3 2 1 27 27 H 1.08997 * 109.46835 * 54.42504 * 3 2 1 28 28 H 1.08998 * 109.47527 * 186.04325 * 5 4 2 29 29 H 1.09001 * 109.47052 * 306.04500 * 5 4 2 30 30 H 0.97000 * 120.00310 * 179.97438 * 9 8 6 31 31 H 1.08996 * 109.47505 * 79.87404 * 14 4 2 32 32 H 1.08999 * 109.47453 * 319.87042 * 14 4 2 33 33 H 1.09000 * 109.47096 * 54.79465 * 15 14 4 34 34 H 1.09005 * 109.47212 * 294.80190 * 15 14 4 35 35 H 1.09000 * 109.47111 * 59.99885 * 16 15 14 36 36 H 1.09001 * 109.47001 * 299.99873 * 16 15 14 37 37 H 1.00904 * 111.00627 * 56.04811 * 17 16 15 38 38 H 1.09007 * 115.54854 * 9.41067 * 18 17 16 39 39 H 1.09003 * 117.50214 * 359.97438 * 19 18 17 40 40 H 1.09003 * 117.50016 * 145.02175 * 19 18 17 41 41 H 1.08997 * 117.50189 * 214.98200 * 20 18 17 42 42 H 1.09005 * 117.49291 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.8201 -2.1436 1.0880 6 6 2.6874 -2.6863 -0.0185 7 1 3.3235 -2.0200 -0.5823 8 6 2.6696 -4.0337 -0.3105 9 7 1.8954 -4.8452 0.3762 10 14 3.7451 -4.7065 -1.6816 11 1 5.0663 -5.0973 -1.1278 12 1 3.0909 -5.8946 -2.2863 13 1 3.9333 -3.6625 -2.7208 14 6 1.3781 -0.1645 2.4109 15 6 2.2254 -0.5216 3.6338 16 6 1.6278 0.1374 4.8786 17 7 2.4417 -0.2051 6.0524 18 6 1.8962 0.4113 7.2693 19 6 2.8866 1.0647 8.2352 20 6 2.2163 -0.2606 8.6061 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 3.1254 1.4441 0.0999 26 1 1.7605 1.9267 -0.9356 27 1 1.5974 1.9843 0.8358 28 1 2.0913 -2.6211 2.0295 29 1 0.7736 -2.3503 0.8639 30 1 1.8825 -5.7930 0.1706 31 1 0.3854 -0.6019 2.5165 32 1 1.2911 0.9193 2.3332 33 1 3.2444 -0.1635 3.4869 34 1 2.2361 -1.6037 3.7651 35 1 0.6088 -0.2207 5.0255 36 1 1.6173 1.2194 4.7473 37 1 3.4056 0.0592 5.9138 38 1 0.9165 0.8768 7.1618 39 1 3.9431 1.0369 7.9681 40 1 2.5583 1.9597 8.7636 41 1 1.4473 -0.2369 9.3781 42 1 2.8313 -1.1603 8.5826 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042529978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:23 Heat of formation + Delta-G solvation = -2.734865 kcal Electronic energy + Delta-G solvation = -17505.049867 eV Core-core repulsion = 14905.543111 eV Total energy + Delta-G solvation = -2599.506756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.60943 -38.73920 -35.58457 -34.85967 -32.75492 -30.99891 -28.28041 -27.96435 -25.24061 -24.01338 -23.22444 -22.46879 -21.90400 -20.15274 -18.35875 -17.12627 -16.95573 -16.62086 -16.24819 -15.91786 -15.64900 -14.89543 -14.66089 -14.35205 -13.99423 -13.95086 -13.43847 -13.27371 -12.98318 -12.79240 -12.60220 -12.47843 -12.43489 -12.38853 -12.33041 -12.08634 -11.85782 -11.66372 -11.54122 -11.28622 -11.17962 -11.02679 -10.56922 -9.15743 -8.87704 -8.17423 -6.26585 1.40506 1.42164 1.52865 2.41511 2.88206 3.06061 3.15189 3.45818 4.02296 4.03826 4.08278 4.14330 4.26450 4.28816 4.36950 4.45925 4.55307 4.61596 4.70317 4.78011 4.80212 4.83880 4.88826 4.91246 5.02532 5.05823 5.08907 5.23792 5.28904 5.29504 5.32698 5.42520 5.48658 5.58328 5.70889 6.12300 6.14158 6.40791 6.48212 6.76611 6.91329 7.42740 8.93577 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.005066 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.306151 B = 5525.602898 C = 6406.072730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 C -0.127 4.127 4 N -0.537 5.537 5 C 0.209 3.791 6 C -0.519 4.519 7 H 0.061 0.939 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.965 3.035 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.264 1.264 14 C 0.061 3.939 15 C -0.101 4.101 16 C 0.077 3.923 17 N -0.676 5.676 18 C 0.009 3.991 19 C -0.193 4.193 20 C -0.179 4.179 21 H 0.063 0.937 22 H 0.072 0.928 23 H 0.024 0.976 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.001 0.999 29 H -0.036 1.036 30 H 0.263 0.737 31 H 0.015 0.985 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.035 0.965 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.346 0.654 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 14.553 9.509 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.036 4.036 3 C -0.185 4.185 4 N -0.260 5.260 5 C 0.083 3.917 6 C -0.558 4.558 7 H 0.079 0.921 8 C -0.196 4.196 9 N -0.577 5.577 10 Si 0.790 3.210 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.188 1.188 14 C -0.068 4.068 15 C -0.140 4.140 16 C -0.052 4.052 17 N -0.306 5.306 18 C -0.102 4.102 19 C -0.232 4.232 20 C -0.217 4.217 21 H 0.082 0.918 22 H 0.091 0.909 23 H 0.043 0.957 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.019 0.981 29 H -0.019 1.019 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.165 0.835 38 H 0.132 0.868 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.658 13.862 9.634 16.894 hybrid contribution -0.257 -0.466 -0.776 0.941 sum -0.915 13.396 8.857 16.085 Atomic orbital electron populations 1.22334 0.97660 1.00360 1.02573 1.21685 0.92732 0.95691 0.93541 1.21744 1.01138 0.93525 1.02079 1.62236 1.57105 1.04711 1.01966 1.19345 0.92983 0.83984 0.95400 1.21492 1.24127 0.93019 1.17144 0.92127 1.25883 0.97145 0.97350 0.99270 1.70096 1.40673 1.04373 1.42512 0.85441 0.78598 0.77847 0.79090 1.19984 1.20862 1.18785 1.22014 0.94612 0.99954 0.90215 1.21390 0.99710 0.99792 0.93104 1.21800 0.96999 0.97958 0.88440 1.60129 1.06451 1.61966 1.02082 1.22513 0.99137 1.01499 0.87024 1.23475 0.98491 0.97159 1.04071 1.23179 1.03910 0.96498 0.98154 0.91757 0.90910 0.95663 0.92168 0.92856 0.91087 0.91883 0.98119 1.01879 0.92863 0.96701 0.89289 0.91795 0.94577 0.91588 0.93302 0.83455 0.86778 0.88629 0.87234 0.87530 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.86 8.49 71.98 0.61 -5.24 16 2 C 0.07 2.73 2.76 44.91 0.12 2.85 16 3 C -0.13 -3.63 9.11 71.98 0.66 -2.98 16 4 N -0.54 -23.07 4.35 -875.52 -3.81 -26.88 16 5 C 0.21 11.38 4.45 85.56 0.38 11.76 16 6 C -0.52 -30.07 8.32 25.60 0.21 -29.85 16 7 H 0.06 3.45 7.22 -2.91 -0.02 3.43 16 8 C 0.00 0.07 5.46 84.66 0.46 0.53 16 9 N -0.94 -57.81 13.29 21.45 0.28 -57.52 16 10 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 14 C 0.06 2.13 3.51 86.30 0.30 2.44 16 15 C -0.10 -3.41 5.51 30.59 0.17 -3.24 16 16 C 0.08 2.02 5.54 86.30 0.48 2.50 16 17 N -0.68 -17.11 6.78 -491.57 -3.33 -20.44 16 18 C 0.01 0.18 6.31 44.91 0.28 0.46 16 19 C -0.19 -3.16 10.23 30.62 0.31 -2.85 16 20 C -0.18 -3.37 10.46 30.62 0.32 -3.05 16 21 H 0.06 1.95 6.66 -2.39 -0.02 1.93 16 22 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.02 1.02 6.71 -2.39 -0.02 1.00 16 24 H 0.06 2.64 6.61 -2.39 -0.02 2.62 16 25 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 1.56 6.59 -2.39 -0.02 1.55 16 28 H 0.00 0.04 6.73 -2.39 -0.02 0.03 16 29 H -0.04 -2.15 6.57 -2.39 -0.02 -2.17 16 30 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.01 0.55 7.34 -2.39 -0.02 0.54 16 32 H 0.09 2.58 6.02 -2.39 -0.01 2.57 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.04 1.48 6.97 -2.38 -0.02 1.46 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.35 8.18 8.52 -89.69 -0.76 7.42 16 38 H 0.11 2.14 7.90 -2.38 -0.02 2.12 16 39 H 0.10 1.55 8.09 -2.39 -0.02 1.53 16 40 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -65.40 328.93 -0.31 -65.71 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.21 Total: 18.52 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 4.31 Total: -26.67 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -6.86 Total: -104.84 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -65.40 -0.31 -65.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042529978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.978 kcal (2) G-P(sol) polarization free energy of solvation -65.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds