Wall clock time and date at job start Mon Mar 30 2020 03:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46784 * 2 1 4 4 N 1.46894 * 109.47409 * 120.00152 * 2 1 3 5 5 C 1.46904 * 111.00048 * 84.99633 * 4 2 1 6 6 C 1.53003 * 109.46963 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.46748 * 180.02562 * 6 5 4 8 8 N 1.46906 * 109.46842 * 180.02562 * 7 6 5 9 9 C 1.46905 * 110.99724 * 189.99798 * 8 7 6 10 10 C 1.50701 * 109.46668 * 159.74538 * 9 8 7 11 11 H 1.08000 * 120.00178 * 354.08731 * 10 9 8 12 12 C 1.37878 * 119.99547 * 174.08201 * 10 9 8 13 13 N 1.31515 * 119.99765 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00176 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47122 * 89.99845 * 14 12 10 16 16 H 1.48500 * 109.47151 * 209.99652 * 14 12 10 17 17 H 1.48502 * 109.47161 * 329.99610 * 14 12 10 18 18 C 1.46895 * 110.99870 * 66.04808 * 8 7 6 19 19 C 1.53001 * 117.49620 * 262.86612 * 18 8 7 20 20 C 1.53006 * 117.49879 * 194.20952 * 18 8 7 21 21 H 1.08991 * 109.47064 * 299.99613 * 1 2 3 22 22 H 1.09003 * 109.47254 * 60.00199 * 1 2 3 23 23 H 1.09000 * 109.46657 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46877 * 240.00374 * 2 1 3 25 25 H 1.09000 * 109.47045 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47063 * 299.99918 * 3 2 1 27 27 H 1.09000 * 109.47551 * 60.00215 * 3 2 1 28 28 H 1.00898 * 111.00188 * 208.95315 * 4 2 1 29 29 H 1.09005 * 109.46309 * 60.00332 * 5 4 2 30 30 H 1.08992 * 109.47438 * 300.00624 * 5 4 2 31 31 H 1.09003 * 109.46780 * 60.00733 * 6 5 4 32 32 H 1.09002 * 109.47193 * 300.00600 * 6 5 4 33 33 H 1.09002 * 109.47342 * 299.99992 * 7 6 5 34 34 H 1.08996 * 109.47409 * 60.00126 * 7 6 5 35 35 H 1.08996 * 109.47129 * 279.74683 * 9 8 7 36 36 H 1.09003 * 109.46943 * 39.74610 * 9 8 7 37 37 H 0.97001 * 119.99919 * 180.02562 * 13 12 10 38 38 H 1.09000 * 115.55517 * 48.53667 * 18 8 7 39 39 H 1.08999 * 117.50031 * 0.02562 * 19 18 8 40 40 H 1.09003 * 117.50001 * 145.01890 * 19 18 8 41 41 H 1.08993 * 117.49791 * 214.97902 * 20 18 8 42 42 H 1.09005 * 117.49336 * 359.97304 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0826 -2.1438 0.9806 6 6 2.5964 -2.8289 2.2485 7 6 2.6623 -4.3403 2.0204 8 7 3.1552 -4.9982 3.2379 9 6 3.4569 -6.4137 2.9861 10 6 4.3952 -6.9241 4.0492 11 1 4.8088 -6.2419 4.7772 12 6 4.7254 -8.2620 4.0926 13 7 5.5446 -8.7074 5.0201 14 14 4.0104 -9.4419 2.8332 15 1 4.9108 -9.5129 1.6544 16 1 3.8794 -10.7918 3.4380 17 1 2.6727 -8.9589 2.4060 18 6 2.1952 -4.8527 4.3402 19 6 2.4396 -3.7256 5.3456 20 6 2.6855 -5.1807 5.7520 21 1 -0.3633 0.5137 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 2.9174 -0.3307 1.4846 29 1 2.7590 -2.3574 0.1529 30 1 1.0873 -2.5187 0.7424 31 1 1.9203 -2.6152 3.0764 32 1 3.5919 -2.4538 2.4862 33 1 1.6670 -4.7157 1.7825 34 1 3.3385 -4.5537 1.1926 35 1 2.5332 -6.9918 3.0087 36 1 3.9261 -6.5167 2.0076 37 1 5.7772 -9.6486 5.0504 38 1 1.1605 -5.0953 4.0978 39 1 3.3124 -3.0918 5.1889 40 1 1.5657 -3.2268 5.7648 41 1 1.9733 -5.6388 6.4383 42 1 3.7203 -5.5050 5.8627 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042548453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:11 Heat of formation + Delta-G solvation = 21.236021 kcal Electronic energy + Delta-G solvation = -17472.439646 eV Core-core repulsion = 14873.972345 eV Total energy + Delta-G solvation = -2598.467301 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.13475 -37.31290 -34.17319 -33.07245 -31.97350 -29.52724 -27.48160 -26.90883 -23.59348 -22.00824 -21.52173 -20.97698 -20.51621 -19.38374 -16.79500 -16.11980 -15.48780 -15.09032 -14.93139 -14.52975 -14.22216 -13.74352 -13.64054 -12.81870 -12.58445 -12.49690 -12.33280 -12.19230 -12.01921 -11.70854 -11.45277 -11.25810 -11.03726 -10.93644 -10.71549 -10.69011 -10.50467 -10.18174 -9.90154 -9.53604 -9.16498 -9.07043 -8.50917 -8.49990 -7.34993 -6.00626 -3.96184 3.29772 3.37447 3.39319 4.00781 4.45037 4.59405 4.70029 4.75709 4.86005 5.14044 5.25450 5.29351 5.39069 5.44237 5.55430 5.63543 5.65346 5.70286 5.71663 5.75269 5.80484 5.90142 5.94961 6.07682 6.11198 6.20097 6.24594 6.38147 6.52563 6.61663 6.78609 6.83172 6.99441 7.03001 7.20773 7.33245 7.68837 7.94330 8.14492 8.71835 9.09338 9.61478 11.12071 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033276 B = 0.004584 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.256118 B = 6106.674260 C = 6552.141562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.076 3.924 3 C -0.154 4.154 4 N -0.686 5.686 5 C 0.060 3.940 6 C -0.110 4.110 7 C 0.060 3.940 8 N -0.501 5.501 9 C 0.162 3.838 10 C -0.498 4.498 11 H 0.086 0.914 12 C 0.067 3.933 13 N -0.902 5.902 14 Si 0.871 3.129 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.269 1.269 18 C 0.021 3.979 19 C -0.180 4.180 20 C -0.153 4.153 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.040 0.960 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.341 0.659 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.065 0.935 35 H -0.007 1.007 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.751 15.587 -8.343 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 C -0.212 4.212 4 N -0.319 5.319 5 C -0.069 4.069 6 C -0.148 4.148 7 C -0.069 4.069 8 N -0.225 5.225 9 C 0.036 3.964 10 C -0.537 4.537 11 H 0.104 0.896 12 C -0.134 4.134 13 N -0.542 5.542 14 Si 0.698 3.302 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.194 1.194 18 C -0.088 4.088 19 C -0.218 4.218 20 C -0.190 4.190 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.159 0.841 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.010 0.990 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.845 15.614 -7.857 19.590 hybrid contribution -0.336 -1.345 -1.568 2.093 sum -9.181 14.268 -9.425 19.409 Atomic orbital electron populations 1.21791 0.94704 1.01827 1.01427 1.21503 0.96077 0.94170 0.91604 1.21972 1.00792 0.95956 1.02434 1.60520 1.33447 1.03984 1.33913 1.22009 1.00374 0.87242 0.97320 1.21529 1.01817 0.94447 0.97009 1.21997 0.97637 0.93753 0.93539 1.61721 1.40301 1.16861 1.03596 1.20205 0.95458 0.83305 0.97431 1.21113 1.25508 0.93670 1.13377 0.89595 1.24891 0.95040 0.98008 0.95484 1.69887 1.35429 1.14996 1.33879 0.86932 0.80128 0.80877 0.82215 1.20326 1.21291 1.19358 1.22051 0.93405 1.03864 0.89509 1.23011 1.02318 0.92355 1.04132 1.23169 1.04570 0.95809 0.95461 0.92025 0.92908 0.92843 0.94163 0.92776 0.92132 0.91721 0.84072 0.95507 0.91437 0.90801 0.91577 0.96139 0.91623 0.98951 0.96224 0.92786 0.91526 0.88946 0.90277 0.90268 0.85967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.42 37.16 0.35 -0.93 16 2 C 0.08 0.72 3.22 -67.71 -0.22 0.50 16 3 C -0.15 -1.20 9.18 37.16 0.34 -0.86 16 4 N -0.69 -7.58 6.31 -106.72 -0.67 -8.25 16 5 C 0.06 0.73 5.48 -3.82 -0.02 0.71 16 6 C -0.11 -1.58 5.28 -26.73 -0.14 -1.72 16 7 C 0.06 1.03 4.94 -3.82 -0.02 1.01 16 8 N -0.50 -10.50 4.56 -228.07 -1.04 -11.54 16 9 C 0.16 3.95 3.87 -4.97 -0.02 3.93 16 10 C -0.50 -13.96 8.42 -34.44 -0.29 -14.25 16 11 H 0.09 2.59 6.04 -52.49 -0.32 2.28 16 12 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 13 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 14 Si 0.87 21.57 27.59 -169.99 -4.69 16.88 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.27 -6.47 6.38 56.52 0.36 -6.11 16 18 C 0.02 0.41 4.19 -67.71 -0.28 0.12 16 19 C -0.18 -3.07 9.22 -26.69 -0.25 -3.31 16 20 C -0.15 -3.04 9.48 -26.69 -0.25 -3.30 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.52 7.45 -51.93 -0.39 0.14 16 24 H 0.04 0.40 7.80 -51.93 -0.40 -0.01 16 25 H 0.05 0.40 8.12 -51.93 -0.42 -0.02 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.34 3.54 8.35 -39.29 -0.33 3.21 16 29 H 0.03 0.32 8.06 -51.93 -0.42 -0.10 16 30 H 0.07 0.84 7.44 -51.93 -0.39 0.45 16 31 H 0.07 1.12 6.56 -51.93 -0.34 0.78 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.02 0.35 8.12 -51.93 -0.42 -0.08 16 34 H 0.07 1.12 7.82 -51.93 -0.41 0.71 16 35 H -0.01 -0.18 6.63 -51.93 -0.34 -0.53 16 36 H 0.02 0.48 7.44 -51.93 -0.39 0.09 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.12 2.85 5.52 -51.93 -0.29 2.56 16 LS Contribution 328.12 15.07 4.94 4.94 Total: -1.00 -29.42 328.12 -9.41 -38.83 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.83 Total: 2.10 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -0.90 Total: -16.26 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.94 Total: -46.50 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.69 Total: 16.88 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.42 -9.41 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.069 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds