Wall clock time and date at job start Mon Mar 30 2020 03:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46784 * 2 1 4 4 N 1.46894 * 109.47409 * 120.00152 * 2 1 3 5 5 C 1.46904 * 111.00048 * 84.99633 * 4 2 1 6 6 C 1.53003 * 109.46963 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.46748 * 180.02562 * 6 5 4 8 8 N 1.46906 * 109.46842 * 180.02562 * 7 6 5 9 9 C 1.46905 * 110.99724 * 189.99798 * 8 7 6 10 10 C 1.50701 * 109.46668 * 159.74538 * 9 8 7 11 11 H 1.08000 * 120.00178 * 354.08731 * 10 9 8 12 12 C 1.37878 * 119.99547 * 174.08201 * 10 9 8 13 13 N 1.31515 * 119.99765 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00176 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47122 * 89.99845 * 14 12 10 16 16 H 1.48500 * 109.47151 * 209.99652 * 14 12 10 17 17 H 1.48502 * 109.47161 * 329.99610 * 14 12 10 18 18 C 1.46895 * 110.99870 * 66.04808 * 8 7 6 19 19 C 1.53001 * 117.49620 * 262.86612 * 18 8 7 20 20 C 1.53006 * 117.49879 * 194.20952 * 18 8 7 21 21 H 1.08991 * 109.47064 * 299.99613 * 1 2 3 22 22 H 1.09003 * 109.47254 * 60.00199 * 1 2 3 23 23 H 1.09000 * 109.46657 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46877 * 240.00374 * 2 1 3 25 25 H 1.09000 * 109.47045 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47063 * 299.99918 * 3 2 1 27 27 H 1.09000 * 109.47551 * 60.00215 * 3 2 1 28 28 H 1.00898 * 111.00188 * 208.95315 * 4 2 1 29 29 H 1.09005 * 109.46309 * 60.00332 * 5 4 2 30 30 H 1.08992 * 109.47438 * 300.00624 * 5 4 2 31 31 H 1.09003 * 109.46780 * 60.00733 * 6 5 4 32 32 H 1.09002 * 109.47193 * 300.00600 * 6 5 4 33 33 H 1.09002 * 109.47342 * 299.99992 * 7 6 5 34 34 H 1.08996 * 109.47409 * 60.00126 * 7 6 5 35 35 H 1.08996 * 109.47129 * 279.74683 * 9 8 7 36 36 H 1.09003 * 109.46943 * 39.74610 * 9 8 7 37 37 H 0.97001 * 119.99919 * 180.02562 * 13 12 10 38 38 H 1.09000 * 115.55517 * 48.53667 * 18 8 7 39 39 H 1.08999 * 117.50031 * 0.02562 * 19 18 8 40 40 H 1.09003 * 117.50001 * 145.01890 * 19 18 8 41 41 H 1.08993 * 117.49791 * 214.97902 * 20 18 8 42 42 H 1.09005 * 117.49336 * 359.97304 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0826 -2.1438 0.9806 6 6 2.5964 -2.8289 2.2485 7 6 2.6623 -4.3403 2.0204 8 7 3.1552 -4.9982 3.2379 9 6 3.4569 -6.4137 2.9861 10 6 4.3952 -6.9241 4.0492 11 1 4.8088 -6.2419 4.7772 12 6 4.7254 -8.2620 4.0926 13 7 5.5446 -8.7074 5.0201 14 14 4.0104 -9.4419 2.8332 15 1 4.9108 -9.5129 1.6544 16 1 3.8794 -10.7918 3.4380 17 1 2.6727 -8.9589 2.4060 18 6 2.1952 -4.8527 4.3402 19 6 2.4396 -3.7256 5.3456 20 6 2.6855 -5.1807 5.7520 21 1 -0.3633 0.5137 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 2.9174 -0.3307 1.4846 29 1 2.7590 -2.3574 0.1529 30 1 1.0873 -2.5187 0.7424 31 1 1.9203 -2.6152 3.0764 32 1 3.5919 -2.4538 2.4862 33 1 1.6670 -4.7157 1.7825 34 1 3.3385 -4.5537 1.1926 35 1 2.5332 -6.9918 3.0087 36 1 3.9261 -6.5167 2.0076 37 1 5.7772 -9.6486 5.0504 38 1 1.1605 -5.0953 4.0978 39 1 3.3124 -3.0918 5.1889 40 1 1.5657 -3.2268 5.7648 41 1 1.9733 -5.6388 6.4383 42 1 3.7203 -5.5050 5.8627 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042548453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:11 Heat of formation + Delta-G solvation = 1.571932 kcal Electronic energy + Delta-G solvation = -17473.292345 eV Core-core repulsion = 14873.972345 eV Total energy + Delta-G solvation = -2599.320000 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.57180 -38.28403 -35.54377 -34.90649 -33.51305 -30.87391 -28.67803 -28.05876 -24.87196 -23.82931 -23.04302 -22.16196 -21.42485 -20.94582 -18.87971 -17.08931 -16.82886 -16.44349 -16.31065 -15.89196 -15.52007 -15.21133 -14.91724 -14.56525 -13.87401 -13.77216 -13.47909 -13.33052 -13.19796 -12.90783 -12.79125 -12.45096 -12.33856 -12.22911 -12.12776 -11.97596 -11.84011 -11.64241 -11.54541 -11.27967 -10.98467 -10.72673 -10.65285 -9.35424 -9.00256 -8.22033 -6.22530 1.34191 1.35705 1.45270 2.36710 2.94769 3.09756 3.14029 3.35035 4.02263 4.08882 4.14634 4.20700 4.24832 4.32081 4.43129 4.48563 4.49770 4.58405 4.73182 4.79890 4.83694 4.85205 4.90416 4.92234 4.98777 5.00626 5.04149 5.10646 5.27863 5.31123 5.34871 5.41662 5.44417 5.53563 5.63112 6.05519 6.16195 6.49881 6.51334 6.70406 6.84354 7.39140 8.93796 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033276 B = 0.004584 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.256118 B = 6106.674260 C = 6552.141562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.073 3.927 3 C -0.149 4.149 4 N -0.692 5.692 5 C 0.070 3.930 6 C -0.095 4.095 7 C 0.059 3.941 8 N -0.517 5.517 9 C 0.170 3.830 10 C -0.498 4.498 11 H 0.050 0.950 12 C 0.008 3.992 13 N -0.949 5.949 14 Si 0.939 3.061 15 H -0.267 1.267 16 H -0.284 1.284 17 H -0.255 1.255 18 C 0.009 3.991 19 C -0.142 4.142 20 C -0.175 4.175 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.043 0.957 24 H 0.039 0.961 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.344 0.656 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.028 0.972 34 H 0.065 0.935 35 H -0.012 1.012 36 H 0.023 0.977 37 H 0.264 0.736 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.451 16.853 -9.996 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.036 4.036 3 C -0.207 4.207 4 N -0.325 5.325 5 C -0.060 4.060 6 C -0.133 4.133 7 C -0.069 4.069 8 N -0.241 5.241 9 C 0.044 3.956 10 C -0.536 4.536 11 H 0.068 0.932 12 C -0.189 4.189 13 N -0.591 5.591 14 Si 0.763 3.237 15 H -0.193 1.193 16 H -0.210 1.210 17 H -0.179 1.179 18 C -0.100 4.100 19 C -0.180 4.180 20 C -0.212 4.212 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.163 0.837 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.006 0.994 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.132 0.868 41 H 0.110 0.890 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.555 16.912 -9.521 22.093 hybrid contribution 0.219 -1.646 -0.997 1.936 sum -10.336 15.267 -10.518 21.226 Atomic orbital electron populations 1.21783 0.94431 1.01383 1.01979 1.21589 0.96288 0.94964 0.90795 1.21934 1.00980 0.94814 1.02967 1.60514 1.33759 1.03311 1.34893 1.21839 1.00230 0.87941 0.95994 1.21356 1.01415 0.92507 0.98059 1.22083 0.97768 0.95193 0.91854 1.61632 1.41978 1.14813 1.05636 1.19970 0.94202 0.85492 0.95977 1.21332 1.25586 0.93382 1.13346 0.93201 1.25749 0.95520 1.00015 0.97621 1.70041 1.37370 1.15521 1.36157 0.85844 0.79962 0.78261 0.79611 1.19258 1.21021 1.17911 1.22194 0.93433 1.05609 0.88749 1.23019 1.03221 0.90626 1.01095 1.23007 1.02452 0.98955 0.96813 0.92504 0.91358 0.93756 0.94307 0.92473 0.90859 0.91922 0.83700 0.95288 0.91389 0.91167 0.92309 0.95388 0.91617 0.99384 0.95883 0.92707 0.90404 0.89262 0.86827 0.89038 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.42 71.99 0.68 -1.55 16 2 C 0.07 1.22 3.22 44.92 0.14 1.37 16 3 C -0.15 -1.97 9.18 71.98 0.66 -1.31 16 4 N -0.69 -13.84 6.31 -491.56 -3.10 -16.94 16 5 C 0.07 1.55 5.48 86.30 0.47 2.03 16 6 C -0.10 -2.56 5.28 30.59 0.16 -2.40 16 7 C 0.06 1.95 4.94 86.30 0.43 2.37 16 8 N -0.52 -21.36 4.56 -875.49 -4.00 -25.36 16 9 C 0.17 8.25 3.87 85.56 0.33 8.59 16 10 C -0.50 -28.62 8.42 25.60 0.22 -28.40 16 11 H 0.05 3.18 6.04 -2.91 -0.02 3.16 16 12 C 0.01 0.44 5.47 84.65 0.46 0.90 16 13 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 14 Si 0.94 44.55 27.59 68.60 1.89 46.44 16 15 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 17 H -0.25 -11.44 6.38 99.48 0.63 -10.81 16 18 C 0.01 0.34 4.19 44.92 0.19 0.53 16 19 C -0.14 -4.58 9.22 30.62 0.28 -4.30 16 20 C -0.17 -7.01 9.48 30.62 0.29 -6.72 16 21 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.04 0.79 7.45 -2.39 -0.02 0.77 16 24 H 0.04 0.67 7.80 -2.39 -0.02 0.66 16 25 H 0.06 0.72 8.12 -2.39 -0.02 0.70 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.34 6.46 8.35 -89.70 -0.75 5.71 16 29 H 0.03 0.64 8.06 -2.38 -0.02 0.62 16 30 H 0.07 1.53 7.44 -2.39 -0.02 1.51 16 31 H 0.07 1.95 6.56 -2.39 -0.02 1.94 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16 34 H 0.07 2.14 7.82 -2.39 -0.02 2.12 16 35 H -0.01 -0.57 6.63 -2.39 -0.02 -0.58 16 36 H 0.02 1.10 7.44 -2.39 -0.02 1.08 16 37 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 42 H 0.08 3.91 5.52 -2.38 -0.01 3.90 16 Total: -1.00 -64.21 328.12 -0.45 -64.65 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.14 Total: 19.32 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 4.31 Total: -28.89 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -6.80 Total: -101.52 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.89 Total: 46.44 kcal Total: -64.21 -0.45 -64.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.226 kcal (2) G-P(sol) polarization free energy of solvation -64.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds