Wall clock time and date at job start Mon Mar 30 2020 03:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47398 * 2 1 4 4 N 1.46907 * 109.47179 * 119.99861 * 2 1 3 5 5 C 1.48533 * 111.00194 * 179.71770 * 4 2 1 6 6 C 1.54931 * 103.22524 * 200.27578 * 5 4 2 7 7 C 1.54595 * 102.92149 * 37.41708 * 6 5 4 8 8 H 1.08999 * 110.39645 * 96.99652 * 7 6 5 9 9 C 1.53001 * 110.30826 * 219.12078 * 7 6 5 10 10 N 1.46896 * 109.47380 * 290.71499 * 9 7 6 11 11 C 1.46900 * 110.99969 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47157 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47253 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99700 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99876 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99751 * 180.02562 * 15 13 12 17 17 Si 1.86791 * 119.99940 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47708 * 269.99870 * 17 15 13 19 19 H 1.48497 * 109.47222 * 30.00168 * 17 15 13 20 20 H 1.48500 * 109.47000 * 149.99997 * 17 15 13 21 21 C 1.47896 * 111.00053 * 62.31684 * 4 2 1 22 22 H 1.08999 * 109.47448 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47163 * 300.00625 * 1 2 3 24 24 H 1.08997 * 109.47051 * 59.99989 * 1 2 3 25 25 H 1.09000 * 109.47526 * 239.99601 * 2 1 3 26 26 H 1.08993 * 109.47218 * 185.67737 * 3 2 1 27 27 H 1.09001 * 109.46766 * 305.67712 * 3 2 1 28 28 H 1.09003 * 109.46832 * 65.67069 * 3 2 1 29 29 H 1.08998 * 110.66766 * 318.71754 * 5 4 2 30 30 H 1.09004 * 110.66344 * 81.67812 * 5 4 2 31 31 H 1.09002 * 110.72702 * 279.05757 * 6 5 4 32 32 H 1.09003 * 110.71882 * 155.77213 * 6 5 4 33 33 H 1.08999 * 109.47145 * 170.71031 * 9 7 6 34 34 H 1.09000 * 109.46855 * 50.71778 * 9 7 6 35 35 H 1.00901 * 110.99704 * 303.95359 * 10 9 7 36 36 H 1.08996 * 109.47478 * 59.99740 * 11 10 9 37 37 H 1.09001 * 109.47119 * 299.99920 * 11 10 9 38 38 H 1.08996 * 109.47410 * 59.99366 * 12 11 10 39 39 H 1.09001 * 109.46769 * 299.99802 * 12 11 10 40 40 H 0.96994 * 119.99691 * 180.02562 * 16 15 13 41 41 H 1.09007 * 109.91497 * 26.49840 * 21 4 2 42 42 H 1.08996 * 110.08568 * 265.29485 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.5044 -0.7182 1.2304 6 6 3.8186 -1.8824 2.2033 7 6 2.7213 -2.9185 1.8683 8 1 3.1051 -3.6679 1.1760 9 6 2.2150 -3.5883 3.1474 10 7 3.2687 -4.4506 3.6987 11 6 2.8173 -5.1112 4.9307 12 6 3.9394 -5.9981 5.4743 13 6 3.4766 -6.6754 6.7385 14 1 2.4815 -6.4919 7.1162 15 6 4.3231 -7.5300 7.4123 16 7 3.9191 -8.1214 8.5153 17 14 6.0433 -7.8488 6.7578 18 1 6.0134 -9.0087 5.8310 19 1 6.5272 -6.6474 6.0316 20 1 6.9571 -8.1439 7.8906 21 6 1.5916 -2.1081 1.2061 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 3.1252 1.4442 -0.1017 27 1 1.5961 1.9848 -0.8348 28 1 1.7620 1.9262 0.9364 29 1 3.9063 -0.9263 0.2389 30 1 3.8976 0.2234 1.6137 31 1 3.7347 -1.5530 3.2390 32 1 4.8092 -2.2925 2.0068 33 1 1.3355 -4.1902 2.9187 34 1 1.9518 -2.8236 3.8782 35 1 3.5756 -5.1277 3.0164 36 1 1.9419 -5.7236 4.7148 37 1 2.5587 -4.3568 5.6737 38 1 4.8146 -5.3854 5.6902 39 1 4.1984 -6.7525 4.7314 40 1 4.5147 -8.7223 8.9895 41 1 1.4364 -2.4539 0.1841 42 1 0.6708 -2.2181 1.7789 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045135235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:58 Heat of formation + Delta-G solvation = -14.471618 kcal Electronic energy + Delta-G solvation = -17253.688331 eV Core-core repulsion = 14653.672631 eV Total energy + Delta-G solvation = -2600.015700 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.56211 -36.42296 -34.48472 -32.75583 -30.80302 -29.42955 -28.77427 -27.13757 -24.82561 -22.73240 -22.18820 -20.63283 -20.31739 -19.64313 -16.76556 -16.49165 -15.86856 -15.15480 -14.74139 -14.30745 -14.16289 -13.79487 -13.38988 -13.25947 -13.04543 -12.72139 -12.47711 -12.39219 -12.28479 -11.78573 -11.43853 -11.36186 -11.10752 -11.08054 -11.06660 -11.01289 -10.76987 -10.52037 -10.02303 -9.83036 -9.65509 -9.20414 -8.55428 -8.51632 -7.88671 -6.02415 -4.00606 3.33510 3.40970 3.47247 3.78189 4.39117 4.48231 4.60327 4.66988 4.78746 4.89161 5.06628 5.13563 5.20366 5.32192 5.35771 5.41736 5.47538 5.53300 5.58189 5.60383 5.64240 5.77629 5.83707 5.91006 5.95755 6.00028 6.05774 6.24127 6.24943 6.31997 6.36176 6.79812 6.80703 6.94906 7.16569 7.40634 7.65012 7.79063 7.94245 8.55668 9.01938 9.60073 11.11047 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.055904 B = 0.003594 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.736360 B = 7788.621867 C = 8065.355937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 C -0.144 4.144 4 N -0.512 5.512 5 C 0.032 3.968 6 C -0.104 4.104 7 C -0.096 4.096 8 H 0.071 0.929 9 C 0.070 3.930 10 N -0.693 5.693 11 C 0.074 3.926 12 C -0.009 4.009 13 C -0.521 4.521 14 H 0.071 0.929 15 C 0.066 3.934 16 N -0.905 5.905 17 Si 0.882 3.118 18 H -0.278 1.278 19 H -0.263 1.263 20 H -0.288 1.288 21 C 0.043 3.957 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.332 0.668 36 H 0.020 0.980 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.008 0.992 40 H 0.263 0.737 41 H 0.041 0.959 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.522 16.202 -19.261 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.042 4.042 3 C -0.202 4.202 4 N -0.237 5.237 5 C -0.095 4.095 6 C -0.142 4.142 7 C -0.116 4.116 8 H 0.089 0.911 9 C -0.060 4.060 10 N -0.324 5.324 11 C -0.054 4.054 12 C -0.047 4.047 13 C -0.560 4.560 14 H 0.089 0.911 15 C -0.135 4.135 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.204 1.204 19 H -0.187 1.187 20 H -0.214 1.214 21 C -0.086 4.086 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.149 0.851 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.026 0.974 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.387 16.890 -18.339 25.161 hybrid contribution 0.526 -1.452 -1.339 2.044 sum -2.861 15.438 -19.677 25.174 Atomic orbital electron populations 1.21844 0.94303 1.02026 1.02069 1.21805 0.95890 0.95366 0.91128 1.21841 1.00813 0.95243 1.02303 1.64829 1.08646 1.13041 1.37173 1.23282 0.88000 0.99844 0.98388 1.22417 0.98132 0.93652 1.00015 1.22013 0.95393 0.97226 0.96923 0.91098 1.21989 0.92530 0.96445 0.95044 1.60576 1.37764 1.25996 1.08027 1.21943 0.97561 0.96174 0.89753 1.19541 0.94853 0.94254 0.96065 1.21092 1.01897 1.25849 1.07118 0.91135 1.25016 0.98469 0.95351 0.94657 1.69919 1.36702 1.30413 1.17343 0.86735 0.84679 0.79071 0.78576 1.20440 1.18740 1.21446 1.22872 0.98942 0.87617 0.99142 0.92686 0.91697 0.92458 0.94416 0.92798 0.92399 0.91622 0.94271 0.90216 0.90134 0.90997 0.95915 0.90845 0.85072 0.96153 0.91752 0.95668 0.97391 0.92748 0.94092 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.13 37.16 0.34 -0.83 16 2 C 0.07 0.60 2.36 -67.71 -0.16 0.44 16 3 C -0.14 -1.12 8.91 37.16 0.33 -0.79 16 4 N -0.51 -5.42 5.11 -222.50 -1.14 -6.55 16 5 C 0.03 0.33 5.45 -1.90 -0.01 0.32 16 6 C -0.10 -1.21 6.48 -24.87 -0.16 -1.37 16 7 C -0.10 -1.12 3.16 -89.26 -0.28 -1.41 16 8 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 9 C 0.07 0.98 4.77 -3.83 -0.02 0.96 16 10 N -0.69 -11.68 6.36 -113.78 -0.72 -12.40 16 11 C 0.07 1.52 5.62 -3.82 -0.02 1.50 16 12 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 13 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 14 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 17 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 C 0.04 0.45 5.12 -2.76 -0.01 0.44 16 22 H 0.05 0.45 7.20 -51.93 -0.37 0.08 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.04 0.34 7.99 -51.93 -0.42 -0.07 16 26 H 0.05 0.41 7.24 -51.93 -0.38 0.03 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.38 7.99 -51.93 -0.42 -0.04 16 30 H 0.08 0.77 7.78 -51.93 -0.40 0.37 16 31 H 0.08 1.06 7.76 -51.93 -0.40 0.66 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 1.09 7.99 -51.93 -0.42 0.67 16 35 H 0.33 5.29 8.73 -39.29 -0.34 4.94 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 39 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.04 0.41 7.60 -51.92 -0.39 0.01 16 42 H 0.08 0.87 7.68 -51.93 -0.40 0.47 16 LS Contribution 326.43 15.07 4.92 4.92 Total: -1.00 -30.47 326.43 -9.48 -39.95 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.10 Total: -1.09 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -0.55 Total: -14.72 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -1.09 Total: -46.50 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.47 -9.48 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045135235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.478 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds