Wall clock time and date at job start Mon Mar 30 2020 03:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47398 * 2 1 4 4 N 1.46907 * 109.47179 * 119.99861 * 2 1 3 5 5 C 1.48533 * 111.00194 * 179.71770 * 4 2 1 6 6 C 1.54931 * 103.22524 * 200.27578 * 5 4 2 7 7 C 1.54595 * 102.92149 * 37.41708 * 6 5 4 8 8 H 1.08999 * 110.39645 * 96.99652 * 7 6 5 9 9 C 1.53001 * 110.30826 * 219.12078 * 7 6 5 10 10 N 1.46896 * 109.47380 * 290.71499 * 9 7 6 11 11 C 1.46900 * 110.99969 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47157 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47253 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99700 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99876 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99751 * 180.02562 * 15 13 12 17 17 Si 1.86791 * 119.99940 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47708 * 269.99870 * 17 15 13 19 19 H 1.48497 * 109.47222 * 30.00168 * 17 15 13 20 20 H 1.48500 * 109.47000 * 149.99997 * 17 15 13 21 21 C 1.47896 * 111.00053 * 62.31684 * 4 2 1 22 22 H 1.08999 * 109.47448 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47163 * 300.00625 * 1 2 3 24 24 H 1.08997 * 109.47051 * 59.99989 * 1 2 3 25 25 H 1.09000 * 109.47526 * 239.99601 * 2 1 3 26 26 H 1.08993 * 109.47218 * 185.67737 * 3 2 1 27 27 H 1.09001 * 109.46766 * 305.67712 * 3 2 1 28 28 H 1.09003 * 109.46832 * 65.67069 * 3 2 1 29 29 H 1.08998 * 110.66766 * 318.71754 * 5 4 2 30 30 H 1.09004 * 110.66344 * 81.67812 * 5 4 2 31 31 H 1.09002 * 110.72702 * 279.05757 * 6 5 4 32 32 H 1.09003 * 110.71882 * 155.77213 * 6 5 4 33 33 H 1.08999 * 109.47145 * 170.71031 * 9 7 6 34 34 H 1.09000 * 109.46855 * 50.71778 * 9 7 6 35 35 H 1.00901 * 110.99704 * 303.95359 * 10 9 7 36 36 H 1.08996 * 109.47478 * 59.99740 * 11 10 9 37 37 H 1.09001 * 109.47119 * 299.99920 * 11 10 9 38 38 H 1.08996 * 109.47410 * 59.99366 * 12 11 10 39 39 H 1.09001 * 109.46769 * 299.99802 * 12 11 10 40 40 H 0.96994 * 119.99691 * 180.02562 * 16 15 13 41 41 H 1.09007 * 109.91497 * 26.49840 * 21 4 2 42 42 H 1.08996 * 110.08568 * 265.29485 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.5044 -0.7182 1.2304 6 6 3.8186 -1.8824 2.2033 7 6 2.7213 -2.9185 1.8683 8 1 3.1051 -3.6679 1.1760 9 6 2.2150 -3.5883 3.1474 10 7 3.2687 -4.4506 3.6987 11 6 2.8173 -5.1112 4.9307 12 6 3.9394 -5.9981 5.4743 13 6 3.4766 -6.6754 6.7385 14 1 2.4815 -6.4919 7.1162 15 6 4.3231 -7.5300 7.4123 16 7 3.9191 -8.1214 8.5153 17 14 6.0433 -7.8488 6.7578 18 1 6.0134 -9.0087 5.8310 19 1 6.5272 -6.6474 6.0316 20 1 6.9571 -8.1439 7.8906 21 6 1.5916 -2.1081 1.2061 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 3.1252 1.4442 -0.1017 27 1 1.5961 1.9848 -0.8348 28 1 1.7620 1.9262 0.9364 29 1 3.9063 -0.9263 0.2389 30 1 3.8976 0.2234 1.6137 31 1 3.7347 -1.5530 3.2390 32 1 4.8092 -2.2925 2.0068 33 1 1.3355 -4.1902 2.9187 34 1 1.9518 -2.8236 3.8782 35 1 3.5756 -5.1277 3.0164 36 1 1.9419 -5.7236 4.7148 37 1 2.5587 -4.3568 5.6737 38 1 4.8146 -5.3854 5.6902 39 1 4.1984 -6.7525 4.7314 40 1 4.5147 -8.7223 8.9895 41 1 1.4364 -2.4539 0.1841 42 1 0.6708 -2.2181 1.7789 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045135235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:58 Heat of formation + Delta-G solvation = -35.570535 kcal Electronic energy + Delta-G solvation = -17254.603249 eV Core-core repulsion = 14653.672631 eV Total energy + Delta-G solvation = -2600.930618 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40990 -37.71506 -35.71007 -34.63585 -32.33802 -30.32393 -30.03935 -27.86574 -26.42471 -24.16709 -23.02899 -22.30154 -21.21434 -20.63491 -18.96296 -17.33805 -16.89364 -16.46093 -16.27196 -15.56887 -15.25754 -15.00582 -14.76722 -14.62411 -14.24502 -13.92105 -13.67530 -13.36941 -13.09667 -12.94697 -12.90871 -12.69232 -12.32021 -12.08913 -12.03165 -11.83916 -11.82110 -11.70409 -11.68332 -11.47926 -11.42155 -11.30392 -10.77076 -9.33262 -9.28907 -8.30269 -6.35168 1.36850 1.39771 1.53058 2.37180 3.02582 3.05316 3.23736 3.74311 3.79688 3.97430 4.08882 4.18094 4.38337 4.42647 4.44323 4.45948 4.53790 4.63525 4.64121 4.78371 4.82432 4.85984 4.95569 4.95974 4.96297 5.01433 5.02918 5.12208 5.22839 5.29460 5.32185 5.40653 5.42703 5.48836 5.63796 5.99741 6.14156 6.20987 6.25519 6.55984 6.73998 7.29856 8.86635 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.055904 B = 0.003594 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.736360 B = 7788.621867 C = 8065.355937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.064 3.936 3 C -0.141 4.141 4 N -0.526 5.526 5 C 0.039 3.961 6 C -0.104 4.104 7 C -0.090 4.090 8 H 0.080 0.920 9 C 0.074 3.926 10 N -0.690 5.690 11 C 0.087 3.913 12 C -0.003 4.003 13 C -0.536 4.536 14 H 0.030 0.970 15 C 0.004 3.996 16 N -0.952 5.952 17 Si 0.957 3.043 18 H -0.265 1.265 19 H -0.247 1.247 20 H -0.284 1.284 21 C 0.047 3.953 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.062 0.938 35 H 0.342 0.658 36 H 0.015 0.985 37 H 0.052 0.948 38 H 0.023 0.977 39 H 0.019 0.981 40 H 0.267 0.733 41 H 0.051 0.949 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.349 16.908 -21.729 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.044 4.044 3 C -0.199 4.199 4 N -0.251 5.251 5 C -0.089 4.089 6 C -0.142 4.142 7 C -0.109 4.109 8 H 0.098 0.902 9 C -0.056 4.056 10 N -0.321 5.321 11 C -0.042 4.042 12 C -0.040 4.040 13 C -0.575 4.575 14 H 0.048 0.952 15 C -0.193 4.193 16 N -0.593 5.593 17 Si 0.780 3.220 18 H -0.190 1.190 19 H -0.170 1.170 20 H -0.210 1.210 21 C -0.081 4.081 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.160 0.840 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.228 17.614 -20.831 27.370 hybrid contribution 0.057 -1.637 -0.535 1.723 sum -2.170 15.977 -21.366 26.767 Atomic orbital electron populations 1.21830 0.93806 1.01931 1.02420 1.21893 0.96324 0.95770 0.90451 1.21818 1.00992 0.94587 1.02459 1.64836 1.08883 1.12978 1.38415 1.23228 0.87907 0.99363 0.98378 1.22371 0.98225 0.94294 0.99317 1.21951 0.95820 0.97386 0.95739 0.90166 1.21994 0.92033 0.95728 0.95825 1.60466 1.38628 1.25844 1.07199 1.21608 0.96018 0.95341 0.91234 1.19420 0.95760 0.94636 0.94225 1.21438 1.00491 1.26448 1.09091 0.95173 1.26042 1.03523 0.94964 0.94785 1.70072 1.38725 1.31445 1.19023 0.85560 0.78432 0.79791 0.78252 1.18988 1.17022 1.20974 1.22798 0.98172 0.87700 0.99452 0.93005 0.92533 0.90924 0.94145 0.92637 0.90949 0.92490 0.93322 0.89852 0.92065 0.90794 0.95451 0.91969 0.84029 0.96676 0.92975 0.95875 0.96228 0.92411 0.93028 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.13 71.98 0.66 -1.39 16 2 C 0.06 1.01 2.36 44.91 0.11 1.12 16 3 C -0.14 -1.91 8.91 71.98 0.64 -1.27 16 4 N -0.53 -10.24 5.11 -857.86 -4.38 -14.62 16 5 C 0.04 0.72 5.45 86.65 0.47 1.19 16 6 C -0.10 -2.26 6.48 31.80 0.21 -2.06 16 7 C -0.09 -1.93 3.16 -9.91 -0.03 -1.96 16 8 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 9 C 0.07 1.98 4.77 86.30 0.41 2.39 16 10 N -0.69 -22.29 6.36 -513.89 -3.27 -25.56 16 11 C 0.09 3.56 5.62 86.31 0.49 4.04 16 12 C 0.00 -0.13 4.30 29.85 0.13 0.00 16 13 C -0.54 -31.77 9.66 25.60 0.25 -31.53 16 14 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 15 C 0.00 0.21 5.47 84.65 0.46 0.68 16 16 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 17 Si 0.96 45.04 27.47 68.60 1.88 46.93 16 18 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 C 0.05 0.92 5.12 86.45 0.44 1.36 16 22 H 0.05 0.77 7.20 -2.39 -0.02 0.75 16 23 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.04 0.63 7.99 -2.39 -0.02 0.61 16 26 H 0.05 0.73 7.24 -2.39 -0.02 0.71 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.82 7.99 -2.39 -0.02 0.80 16 30 H 0.08 1.48 7.78 -2.38 -0.02 1.46 16 31 H 0.06 1.57 7.76 -2.39 -0.02 1.55 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 1.82 7.99 -2.39 -0.02 1.80 16 35 H 0.34 10.10 8.73 -89.69 -0.78 9.31 16 36 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 37 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 39 H 0.02 0.89 7.57 -2.39 -0.02 0.88 16 40 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 41 H 0.05 0.91 7.60 -2.38 -0.02 0.89 16 42 H 0.07 1.53 7.68 -2.39 -0.02 1.51 16 Total: -1.00 -65.50 326.43 -1.13 -66.62 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.11 Total: 14.51 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 4.23 Total: -27.42 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -7.35 Total: -100.64 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.93 kcal Total: -65.50 -1.13 -66.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045135235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.051 kcal (2) G-P(sol) polarization free energy of solvation -65.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds