Wall clock time and date at job start Mon Mar 30 2020 03:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47541 * 2 1 4 4 N 1.46903 * 109.47331 * 184.53363 * 3 2 1 5 5 C 1.46894 * 111.00081 * 193.20509 * 4 3 2 6 6 H 1.08996 * 109.47261 * 186.34474 * 5 4 3 7 7 C 1.53007 * 109.47379 * 306.34400 * 5 4 3 8 8 C 1.50699 * 109.47071 * 66.34403 * 5 4 3 9 9 H 1.08006 * 120.00210 * 355.16014 * 8 5 4 10 10 C 1.37878 * 120.00138 * 175.16086 * 8 5 4 11 11 N 1.31518 * 120.00105 * 353.45320 * 10 8 5 12 12 Si 1.86796 * 120.00135 * 173.45040 * 10 8 5 13 13 H 1.48498 * 109.47316 * 179.97438 * 12 10 8 14 14 H 1.48496 * 109.47370 * 300.00272 * 12 10 8 15 15 H 1.48505 * 109.47021 * 60.00338 * 12 10 8 16 16 C 1.46900 * 110.99446 * 69.25436 * 4 3 2 17 17 C 1.53117 * 109.52063 * 163.66668 * 16 4 3 18 18 C 1.53046 * 109.27344 * 182.50031 * 17 16 4 19 19 N 1.46847 * 109.57353 * 59.08718 * 18 17 16 20 20 C 1.46838 * 111.19655 * 298.28748 * 19 18 17 21 21 C 1.53041 * 109.52607 * 61.74415 * 20 19 18 22 22 H 1.09002 * 109.47261 * 300.00500 * 1 2 3 23 23 H 1.09003 * 109.46795 * 59.99598 * 1 2 3 24 24 H 1.08994 * 109.47656 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47261 * 239.99500 * 2 1 3 26 26 H 1.09000 * 109.46932 * 119.99887 * 2 1 3 27 27 H 1.09002 * 109.46842 * 64.53583 * 3 2 1 28 28 H 1.08998 * 109.46893 * 304.54197 * 3 2 1 29 29 H 1.08997 * 109.47183 * 156.95399 * 7 5 4 30 30 H 1.08994 * 109.46765 * 276.95689 * 7 5 4 31 31 H 1.08999 * 109.46786 * 36.95393 * 7 5 4 32 32 H 0.97002 * 119.99596 * 4.10863 * 11 10 8 33 33 H 1.08999 * 109.52225 * 283.79063 * 16 4 3 34 34 H 1.08997 * 109.50268 * 302.38115 * 17 16 4 35 35 H 1.09008 * 109.50118 * 62.49912 * 17 16 4 36 36 H 1.08997 * 109.41236 * 299.06833 * 18 17 16 37 37 H 1.09007 * 109.44753 * 179.12616 * 18 17 16 38 38 H 1.00900 * 110.99988 * 62.38930 * 19 18 17 39 39 H 1.08999 * 109.46435 * 301.72328 * 20 19 18 40 40 H 1.09005 * 109.45378 * 181.75705 * 20 19 18 41 41 H 1.09000 * 109.50419 * 180.88318 * 21 20 19 42 42 H 1.09001 * 109.53206 * 60.77922 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4438 -0.1095 5 6 4.0547 2.7707 0.1988 6 1 5.1267 2.7747 0.0017 7 6 3.3712 3.8222 -0.6778 8 6 3.8097 3.0910 1.6508 9 1 3.2293 2.4159 2.2623 10 6 4.3265 4.2459 2.1988 11 7 5.1386 5.0024 1.4932 12 14 3.8731 4.7361 3.9433 13 1 4.5556 6.0076 4.2934 14 1 2.4028 4.9200 4.0396 15 1 4.3013 3.6698 4.8842 16 6 3.9338 0.9925 -1.4400 17 6 5.3970 1.3832 -1.6659 18 6 5.8192 0.9660 -3.0766 19 7 4.9576 1.6285 -4.0641 20 6 3.5542 1.2304 -3.8963 21 6 3.0638 1.6568 -2.5107 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.7446 1.9323 0.9279 28 1 1.6119 1.9792 -0.8465 29 1 3.4512 4.7996 -0.2020 30 1 3.8558 3.8523 -1.6536 31 1 2.3196 3.5636 -0.8021 32 1 5.3270 4.7802 0.5679 33 1 3.8314 -0.0905 -1.5078 34 1 5.5062 2.4623 -1.5585 35 1 6.0258 0.8783 -0.9325 36 1 5.7239 -0.1150 -3.1785 37 1 6.8560 1.2568 -3.2460 38 1 5.0573 2.6314 -4.0160 39 1 3.4695 0.1482 -3.9944 40 1 2.9460 1.7131 -4.6613 41 1 2.0268 1.3473 -2.3805 42 1 3.1348 2.7404 -2.4165 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247275.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:12 Heat of formation + Delta-G solvation = 6.512681 kcal Electronic energy + Delta-G solvation = -19143.940233 eV Core-core repulsion = 16544.834480 eV Total energy + Delta-G solvation = -2599.105753 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.77114 -36.44669 -33.86728 -32.42002 -30.67791 -29.75387 -28.19517 -25.46675 -24.73908 -22.80496 -22.45229 -20.82191 -20.45722 -18.85480 -16.67936 -16.04184 -15.10822 -14.78866 -14.60164 -14.10086 -13.84798 -13.70547 -13.55509 -12.83845 -12.55192 -12.25556 -12.08709 -11.97460 -11.65104 -11.39917 -11.32854 -11.11425 -11.06633 -10.81899 -10.65083 -10.42537 -10.21479 -10.10129 -10.05077 -9.93455 -9.40822 -8.48600 -8.25369 -8.20018 -7.19040 -6.33412 -4.02953 3.43926 3.44996 3.63731 4.46042 4.52674 4.79395 5.04614 5.19435 5.36310 5.38469 5.40789 5.44301 5.61976 5.63835 5.67091 5.74611 5.91011 6.01067 6.03781 6.04993 6.15684 6.18419 6.24311 6.29030 6.32177 6.40622 6.51214 6.55085 6.66997 6.71320 6.80694 6.89188 7.14797 7.17916 7.39402 7.49278 7.90440 8.13410 8.40795 8.61836 8.90544 9.66316 11.03708 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.008976 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.164986 B = 3118.838216 C = 4040.969921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.056 3.944 4 N -0.519 5.519 5 C 0.193 3.807 6 H 0.042 0.958 7 C -0.180 4.180 8 C -0.579 4.579 9 H 0.054 0.946 10 C 0.017 3.983 11 N -0.915 5.915 12 Si 1.067 2.933 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.288 1.288 16 C 0.091 3.909 17 C -0.157 4.157 18 C 0.058 3.942 19 N -0.688 5.688 20 C 0.062 3.938 21 C -0.211 4.211 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.032 0.968 29 H 0.061 0.939 30 H 0.022 0.978 31 H 0.040 0.960 32 H 0.269 0.731 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.339 0.661 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.434 -7.287 -7.697 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.072 4.072 4 N -0.241 5.241 5 C 0.086 3.914 6 H 0.060 0.940 7 C -0.239 4.239 8 C -0.618 4.618 9 H 0.072 0.928 10 C -0.186 4.186 11 N -0.551 5.551 12 Si 0.895 3.105 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.215 1.215 16 C -0.018 4.018 17 C -0.197 4.197 18 C -0.072 4.072 19 N -0.316 5.316 20 C -0.069 4.069 21 C -0.251 4.251 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.156 0.844 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.815 -6.965 -6.641 10.352 hybrid contribution -0.959 -0.086 -0.932 1.340 sum -4.774 -7.051 -7.573 11.395 Atomic orbital electron populations 1.21729 0.96599 1.00795 1.01497 1.21529 0.94418 0.98120 1.01698 1.22142 0.88750 0.94947 1.01404 1.62469 1.08566 1.29498 1.23536 1.19551 0.94722 0.81873 0.95236 0.94017 1.22872 0.99588 1.03680 0.97802 1.21916 1.37142 1.08087 0.94618 0.92786 1.25712 0.93689 0.93581 1.05661 1.70807 1.32141 1.41435 1.10757 0.83567 0.75895 0.76261 0.74740 1.20920 1.21621 1.21498 1.21615 0.93490 0.98335 0.88402 1.22527 0.96789 1.02718 0.97627 1.22018 0.96639 0.99155 0.89381 1.60743 1.07059 1.12887 1.50909 1.21943 0.88779 1.00577 0.95581 1.23489 1.00992 1.03748 0.96916 0.92762 0.93357 0.93290 0.92938 0.91809 0.90105 0.95049 0.91988 0.95910 0.94083 0.92027 0.91712 0.90714 0.91047 0.91410 0.91019 0.84442 0.91589 0.91560 0.91507 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.89 5.86 -26.73 -0.16 -2.05 16 3 C 0.06 1.05 3.42 -3.82 -0.01 1.04 16 4 N -0.52 -10.75 4.61 -219.96 -1.01 -11.76 16 5 C 0.19 4.61 1.42 -68.86 -0.10 4.52 16 6 H 0.04 1.09 5.01 -51.93 -0.26 0.83 16 7 C -0.18 -4.06 6.89 37.16 0.26 -3.81 16 8 C -0.58 -15.79 7.81 -34.44 -0.27 -16.06 16 9 H 0.05 1.51 7.06 -52.48 -0.37 1.14 16 10 C 0.02 0.48 5.01 -17.82 -0.09 0.39 16 11 N -0.91 -26.80 13.01 55.43 0.72 -26.08 16 12 Si 1.07 25.06 29.91 -169.99 -5.08 19.97 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 16 C 0.09 1.58 2.03 -67.59 -0.14 1.44 16 17 C -0.16 -2.68 4.45 -26.65 -0.12 -2.79 16 18 C 0.06 0.82 6.55 -3.83 -0.03 0.79 16 19 N -0.69 -9.49 6.87 -113.81 -0.78 -10.27 16 20 C 0.06 0.83 6.55 -3.84 -0.03 0.81 16 21 C -0.21 -3.30 4.04 -26.65 -0.11 -3.41 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.80 6.81 -51.93 -0.35 0.45 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.08 1.74 6.54 -51.93 -0.34 1.41 16 28 H 0.03 0.58 4.19 -51.93 -0.22 0.37 16 29 H 0.06 1.57 6.30 -51.93 -0.33 1.24 16 30 H 0.02 0.46 5.59 -51.93 -0.29 0.17 16 31 H 0.04 0.88 5.23 -51.93 -0.27 0.61 16 32 H 0.27 7.79 6.12 -40.82 -0.25 7.54 16 33 H 0.06 1.11 7.28 -51.93 -0.38 0.73 16 34 H 0.07 1.43 5.30 -51.93 -0.28 1.16 16 35 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.34 4.65 8.86 -39.29 -0.35 4.30 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 1.04 6.16 -51.93 -0.32 0.72 16 42 H 0.09 1.51 3.90 -51.93 -0.20 1.31 16 LS Contribution 297.30 15.07 4.48 4.48 Total: -1.00 -28.16 297.30 -8.90 -37.06 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.80 Total: 7.33 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -0.42 Total: -20.73 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -1.07 Total: -48.11 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.08 Total: 19.97 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.16 -8.90 -37.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247275.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.570 kcal (2) G-P(sol) polarization free energy of solvation -28.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds