Wall clock time and date at job start Mon Mar 30 2020 03:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47541 * 2 1 4 4 N 1.46903 * 109.47331 * 184.53363 * 3 2 1 5 5 C 1.46894 * 111.00081 * 193.20509 * 4 3 2 6 6 H 1.08996 * 109.47261 * 186.34474 * 5 4 3 7 7 C 1.53007 * 109.47379 * 306.34400 * 5 4 3 8 8 C 1.50699 * 109.47071 * 66.34403 * 5 4 3 9 9 H 1.08006 * 120.00210 * 355.16014 * 8 5 4 10 10 C 1.37878 * 120.00138 * 175.16086 * 8 5 4 11 11 N 1.31518 * 120.00105 * 353.45320 * 10 8 5 12 12 Si 1.86796 * 120.00135 * 173.45040 * 10 8 5 13 13 H 1.48498 * 109.47316 * 179.97438 * 12 10 8 14 14 H 1.48496 * 109.47370 * 300.00272 * 12 10 8 15 15 H 1.48505 * 109.47021 * 60.00338 * 12 10 8 16 16 C 1.46900 * 110.99446 * 69.25436 * 4 3 2 17 17 C 1.53117 * 109.52063 * 163.66668 * 16 4 3 18 18 C 1.53046 * 109.27344 * 182.50031 * 17 16 4 19 19 N 1.46847 * 109.57353 * 59.08718 * 18 17 16 20 20 C 1.46838 * 111.19655 * 298.28748 * 19 18 17 21 21 C 1.53041 * 109.52607 * 61.74415 * 20 19 18 22 22 H 1.09002 * 109.47261 * 300.00500 * 1 2 3 23 23 H 1.09003 * 109.46795 * 59.99598 * 1 2 3 24 24 H 1.08994 * 109.47656 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47261 * 239.99500 * 2 1 3 26 26 H 1.09000 * 109.46932 * 119.99887 * 2 1 3 27 27 H 1.09002 * 109.46842 * 64.53583 * 3 2 1 28 28 H 1.08998 * 109.46893 * 304.54197 * 3 2 1 29 29 H 1.08997 * 109.47183 * 156.95399 * 7 5 4 30 30 H 1.08994 * 109.46765 * 276.95689 * 7 5 4 31 31 H 1.08999 * 109.46786 * 36.95393 * 7 5 4 32 32 H 0.97002 * 119.99596 * 4.10863 * 11 10 8 33 33 H 1.08999 * 109.52225 * 283.79063 * 16 4 3 34 34 H 1.08997 * 109.50268 * 302.38115 * 17 16 4 35 35 H 1.09008 * 109.50118 * 62.49912 * 17 16 4 36 36 H 1.08997 * 109.41236 * 299.06833 * 18 17 16 37 37 H 1.09007 * 109.44753 * 179.12616 * 18 17 16 38 38 H 1.00900 * 110.99988 * 62.38930 * 19 18 17 39 39 H 1.08999 * 109.46435 * 301.72328 * 20 19 18 40 40 H 1.09005 * 109.45378 * 181.75705 * 20 19 18 41 41 H 1.09000 * 109.50419 * 180.88318 * 21 20 19 42 42 H 1.09001 * 109.53206 * 60.77922 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4438 -0.1095 5 6 4.0547 2.7707 0.1988 6 1 5.1267 2.7747 0.0017 7 6 3.3712 3.8222 -0.6778 8 6 3.8097 3.0910 1.6508 9 1 3.2293 2.4159 2.2623 10 6 4.3265 4.2459 2.1988 11 7 5.1386 5.0024 1.4932 12 14 3.8731 4.7361 3.9433 13 1 4.5556 6.0076 4.2934 14 1 2.4028 4.9200 4.0396 15 1 4.3013 3.6698 4.8842 16 6 3.9338 0.9925 -1.4400 17 6 5.3970 1.3832 -1.6659 18 6 5.8192 0.9660 -3.0766 19 7 4.9576 1.6285 -4.0641 20 6 3.5542 1.2304 -3.8963 21 6 3.0638 1.6568 -2.5107 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.7446 1.9323 0.9279 28 1 1.6119 1.9792 -0.8465 29 1 3.4512 4.7996 -0.2020 30 1 3.8558 3.8523 -1.6536 31 1 2.3196 3.5636 -0.8021 32 1 5.3270 4.7802 0.5679 33 1 3.8314 -0.0905 -1.5078 34 1 5.5062 2.4623 -1.5585 35 1 6.0258 0.8783 -0.9325 36 1 5.7239 -0.1150 -3.1785 37 1 6.8560 1.2568 -3.2460 38 1 5.0573 2.6314 -4.0160 39 1 3.4695 0.1482 -3.9944 40 1 2.9460 1.7131 -4.6613 41 1 2.0268 1.3473 -2.3805 42 1 3.1348 2.7404 -2.4165 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048247275.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:12 Heat of formation + Delta-G solvation = -12.889960 kcal Electronic energy + Delta-G solvation = -19144.781594 eV Core-core repulsion = 16544.834480 eV Total energy + Delta-G solvation = -2599.947114 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23700 -37.84651 -35.61789 -33.96707 -31.91465 -31.35615 -29.80212 -27.17513 -26.46700 -24.20387 -23.72653 -22.25147 -21.94084 -20.47722 -18.56242 -17.46308 -16.61341 -16.16098 -16.05969 -15.67028 -15.41566 -15.18384 -14.84170 -14.30280 -14.06344 -13.83874 -13.49162 -13.40279 -13.11703 -13.05401 -12.73892 -12.70872 -12.54713 -12.37412 -12.10115 -11.97349 -11.88724 -11.67400 -11.56587 -11.37600 -10.98898 -10.47141 -10.30696 -9.43204 -8.80678 -8.55644 -6.25228 1.51370 1.58160 1.77458 2.56535 3.17449 3.25301 3.42725 3.74168 3.90463 4.08349 4.14916 4.22848 4.33053 4.38500 4.40923 4.51215 4.54025 4.57698 4.67371 4.70243 4.76830 4.83705 4.90890 4.94429 4.96651 4.97889 5.07006 5.15425 5.17960 5.23116 5.33629 5.43890 5.48648 5.55854 5.97266 6.04207 6.16131 6.36747 6.56647 6.59850 6.83913 7.51525 8.82119 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.008976 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.164986 B = 3118.838216 C = 4040.969921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C 0.060 3.940 4 N -0.535 5.535 5 C 0.200 3.800 6 H 0.018 0.982 7 C -0.160 4.160 8 C -0.588 4.588 9 H 0.041 0.959 10 C -0.030 4.030 11 N -0.938 5.938 12 Si 1.108 2.892 13 H -0.285 1.285 14 H -0.274 1.274 15 H -0.276 1.276 16 C 0.090 3.910 17 C -0.152 4.152 18 C 0.068 3.932 19 N -0.685 5.685 20 C 0.067 3.933 21 C -0.201 4.201 22 H 0.048 0.952 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.038 0.962 29 H 0.028 0.972 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.259 0.741 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.339 0.661 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.546 -8.637 -8.858 13.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.068 4.068 4 N -0.257 5.257 5 C 0.092 3.908 6 H 0.036 0.964 7 C -0.219 4.219 8 C -0.627 4.627 9 H 0.059 0.941 10 C -0.228 4.228 11 N -0.576 5.576 12 Si 0.932 3.068 13 H -0.211 1.211 14 H -0.200 1.200 15 H -0.202 1.202 16 C -0.018 4.018 17 C -0.191 4.191 18 C -0.062 4.062 19 N -0.312 5.312 20 C -0.063 4.063 21 C -0.241 4.241 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.156 0.844 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.939 -8.338 -7.823 12.455 hybrid contribution -0.603 0.276 -0.596 0.892 sum -5.541 -8.062 -8.419 12.907 Atomic orbital electron populations 1.21692 0.94348 1.02346 1.01706 1.21448 0.96293 0.95491 1.01634 1.22112 0.87760 0.97082 0.99851 1.62388 1.09674 1.27412 1.26263 1.19275 0.93677 0.84033 0.93827 0.96418 1.22639 1.00074 1.01193 0.98030 1.22237 1.36322 1.07719 0.96412 0.94050 1.26972 0.93248 0.93806 1.08773 1.70908 1.33768 1.42305 1.10603 0.83022 0.76520 0.76119 0.71174 1.21079 1.19950 1.20206 1.21686 0.93926 0.98881 0.87314 1.22458 0.96535 1.00684 0.99459 1.21978 0.97233 0.99874 0.87164 1.60783 1.07282 1.12960 1.50222 1.21975 0.88564 1.01465 0.94327 1.23344 1.00900 1.02149 0.97736 0.93312 0.92441 0.91062 0.91789 0.92998 0.93395 0.94455 0.95316 0.94202 0.93245 0.93071 0.90624 0.93480 0.92714 0.90066 0.90017 0.84445 0.90371 0.89848 0.90951 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.91 71.98 0.71 -2.73 16 2 C -0.11 -3.32 5.86 30.59 0.18 -3.14 16 3 C 0.06 2.24 3.42 86.30 0.30 2.54 16 4 N -0.54 -22.26 4.61 -849.81 -3.92 -26.18 16 5 C 0.20 9.80 1.42 44.17 0.06 9.87 16 6 H 0.02 0.98 5.01 -2.39 -0.01 0.96 16 7 C -0.16 -7.37 6.89 71.98 0.50 -6.87 16 8 C -0.59 -32.96 7.81 25.60 0.20 -32.76 16 9 H 0.04 2.37 7.06 -2.91 -0.02 2.35 16 10 C -0.03 -1.70 5.01 84.65 0.42 -1.28 16 11 N -0.94 -56.51 13.01 21.45 0.28 -56.23 16 12 Si 1.11 51.00 29.91 68.60 2.05 53.05 16 13 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 16 C 0.09 3.05 2.03 44.99 0.09 3.14 16 17 C -0.15 -5.13 4.45 30.65 0.14 -4.99 16 18 C 0.07 1.77 6.55 86.33 0.57 2.33 16 19 N -0.68 -17.16 6.87 -513.99 -3.53 -20.69 16 20 C 0.07 1.59 6.55 86.33 0.57 2.16 16 21 C -0.20 -5.87 4.04 30.65 0.12 -5.75 16 22 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.77 6.81 -2.39 -0.02 1.76 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.05 2.10 6.54 -2.39 -0.02 2.08 16 28 H 0.04 1.35 4.19 -2.39 -0.01 1.34 16 29 H 0.03 1.48 6.30 -2.39 -0.02 1.46 16 30 H 0.04 1.66 5.59 -2.39 -0.01 1.65 16 31 H 0.05 2.13 5.23 -2.39 -0.01 2.12 16 32 H 0.26 15.64 6.12 -92.71 -0.57 15.07 16 33 H 0.08 2.42 7.28 -2.39 -0.02 2.40 16 34 H 0.05 1.85 5.30 -2.39 -0.01 1.83 16 35 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.34 8.67 8.86 -89.69 -0.79 7.88 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.07 2.04 6.16 -2.39 -0.01 2.03 16 42 H 0.07 2.25 3.90 -2.39 -0.01 2.24 16 Total: -1.00 -61.60 297.30 -0.85 -62.44 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.41 Total: 25.08 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 3.85 Total: -37.48 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -7.17 Total: -103.10 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Total: -61.60 -0.85 -62.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247275.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.552 kcal (2) G-P(sol) polarization free energy of solvation -61.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds