Wall clock time and date at job start Mon Mar 30 2020 03:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47095 * 2 1 4 4 N 1.46896 * 109.46861 * 185.92145 * 3 2 1 5 5 C 1.46898 * 111.00376 * 287.22481 * 4 3 2 6 6 H 1.08994 * 109.47251 * 313.34076 * 5 4 3 7 7 C 1.53000 * 109.47418 * 193.33430 * 5 4 3 8 8 C 1.50699 * 109.46666 * 73.33453 * 5 4 3 9 9 H 1.08004 * 120.00167 * 29.99065 * 8 5 4 10 10 C 1.37880 * 120.00110 * 209.97989 * 8 5 4 11 11 N 1.31513 * 120.00182 * 178.99473 * 10 8 5 12 12 Si 1.86798 * 119.99791 * 359.00123 * 10 8 5 13 13 H 1.48499 * 109.47281 * 86.43254 * 12 10 8 14 14 H 1.48508 * 109.46870 * 206.43115 * 12 10 8 15 15 H 1.48494 * 109.47210 * 326.42933 * 12 10 8 16 16 C 1.46905 * 110.99733 * 163.27555 * 4 3 2 17 17 C 1.53119 * 109.52251 * 58.82735 * 16 4 3 18 18 C 1.53044 * 109.27317 * 182.50634 * 17 16 4 19 19 N 1.46842 * 109.57710 * 59.08421 * 18 17 16 20 20 C 1.46847 * 111.19874 * 298.29144 * 19 18 17 21 21 C 1.53028 * 109.52485 * 61.73878 * 20 19 18 22 22 H 1.09001 * 109.46864 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47490 * 300.00017 * 1 2 3 24 24 H 1.09000 * 109.47040 * 60.00039 * 1 2 3 25 25 H 1.09000 * 109.47040 * 119.99961 * 2 1 3 26 26 H 1.08999 * 109.47490 * 239.99983 * 2 1 3 27 27 H 1.08997 * 109.46910 * 305.92253 * 3 2 1 28 28 H 1.08996 * 109.46761 * 65.92271 * 3 2 1 29 29 H 1.09003 * 109.46859 * 65.92910 * 7 5 4 30 30 H 1.08997 * 109.46933 * 185.92291 * 7 5 4 31 31 H 1.08997 * 109.46942 * 305.92792 * 7 5 4 32 32 H 0.97003 * 120.00000 * 180.02562 * 11 10 8 33 33 H 1.08999 * 109.52366 * 178.95082 * 16 4 3 34 34 H 1.09002 * 109.50471 * 302.37821 * 17 16 4 35 35 H 1.09000 * 109.50683 * 62.49686 * 17 16 4 36 36 H 1.08994 * 109.40948 * 299.06451 * 18 17 16 37 37 H 1.09004 * 109.45063 * 179.12600 * 18 17 16 38 38 H 1.00902 * 111.00363 * 62.38420 * 19 18 17 39 39 H 1.09003 * 109.45844 * 301.72415 * 20 19 18 40 40 H 1.09003 * 109.45564 * 181.75865 * 20 19 18 41 41 H 1.09004 * 109.50368 * 180.88091 * 21 20 19 42 42 H 1.09003 * 109.53229 * 60.78658 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5020 1.4450 -0.1429 5 6 4.1527 0.9949 1.0948 6 1 3.7045 1.5052 1.9473 7 6 5.6464 1.3204 1.0332 8 6 3.9687 -0.4930 1.2466 9 1 3.8843 -1.1189 0.3705 10 6 3.9081 -1.0555 2.5040 11 7 3.7277 -2.3514 2.6367 12 14 4.0822 0.0232 4.0191 13 1 2.7539 0.5738 4.3900 14 1 4.6144 -0.7863 5.1446 15 1 5.0168 1.1397 3.7271 16 6 3.9898 2.7721 -0.5415 17 6 3.5741 3.8065 0.5082 18 6 4.0306 5.1958 0.0567 19 7 3.4227 5.5157 -1.2412 20 6 3.8464 4.5630 -2.2752 21 6 3.3832 3.1552 -1.8942 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.5927 1.9860 -0.8322 28 1 1.7658 1.9248 0.9382 29 1 5.7828 2.4019 1.0295 30 1 6.1473 0.8941 1.9024 31 1 6.0733 0.8972 0.1240 32 1 3.6847 -2.7471 3.5214 33 1 5.0766 2.7516 -0.6223 34 1 2.4896 3.7986 0.6175 35 1 4.0386 3.5624 1.4636 36 1 5.1163 5.2073 -0.0380 37 1 3.7225 5.9367 0.7945 38 1 2.4167 5.5494 -1.1709 39 1 4.9331 4.5775 -2.3591 40 1 3.4047 4.8445 -3.2312 41 1 3.7113 2.4460 -2.6541 42 1 2.2956 3.1359 -1.8239 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:15 Heat of formation + Delta-G solvation = -2.679305 kcal Electronic energy + Delta-G solvation = -19058.896924 eV Core-core repulsion = 16459.392577 eV Total energy + Delta-G solvation = -2599.504347 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.50533 -36.51188 -33.00464 -32.64733 -30.89039 -30.34161 -28.54653 -25.56061 -24.38561 -22.91293 -22.40584 -20.89138 -20.21046 -18.45047 -16.85294 -15.86314 -15.21031 -14.68676 -14.64399 -14.27531 -14.02403 -13.84187 -13.26050 -12.68539 -12.53838 -12.44576 -12.28270 -12.01873 -11.87444 -11.52120 -11.12768 -11.04293 -10.83815 -10.70409 -10.60017 -10.45354 -10.41013 -9.93448 -9.93006 -9.75414 -9.49270 -9.07041 -8.47292 -8.34137 -7.25232 -6.08325 -4.01213 3.23283 3.33165 3.34632 4.35703 4.38610 4.68568 4.94690 5.14378 5.25222 5.29024 5.49544 5.52475 5.58769 5.69308 5.79160 5.89079 5.97441 6.00341 6.08149 6.17094 6.19367 6.22887 6.25995 6.33003 6.40439 6.49834 6.59703 6.61666 6.66578 6.77452 6.87169 7.06585 7.12999 7.25947 7.38468 7.63280 7.69112 8.02738 8.16606 8.68454 9.03590 9.54660 11.04113 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024014 B = 0.008961 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.701305 B = 3123.959844 C = 3710.111339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.072 3.928 4 N -0.519 5.519 5 C 0.182 3.818 6 H 0.000 1.000 7 C -0.142 4.142 8 C -0.487 4.487 9 H 0.084 0.916 10 C 0.069 3.931 11 N -0.897 5.897 12 Si 0.865 3.135 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.265 1.265 16 C 0.080 3.920 17 C -0.192 4.192 18 C 0.061 3.939 19 N -0.688 5.688 20 C 0.058 3.942 21 C -0.150 4.150 22 H 0.048 0.952 23 H 0.042 0.958 24 H 0.037 0.963 25 H 0.112 0.888 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.016 0.984 29 H 0.023 0.977 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.263 0.737 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.337 0.663 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 12.053 -5.757 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.056 4.056 4 N -0.241 5.241 5 C 0.076 3.924 6 H 0.017 0.983 7 C -0.201 4.201 8 C -0.525 4.525 9 H 0.102 0.898 10 C -0.133 4.133 11 N -0.536 5.536 12 Si 0.693 3.307 13 H -0.206 1.206 14 H -0.215 1.215 15 H -0.189 1.189 16 C -0.029 4.029 17 C -0.232 4.232 18 C -0.069 4.069 19 N -0.316 5.316 20 C -0.073 4.073 21 C -0.190 4.190 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.130 0.870 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.154 0.846 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.417 12.023 -6.155 13.581 hybrid contribution -0.697 0.191 1.964 2.093 sum -2.115 12.214 -4.192 13.086 Atomic orbital electron populations 1.21794 0.98243 1.00671 0.99871 1.21897 0.92261 0.96620 1.05814 1.21952 0.88467 0.97519 0.97651 1.62378 1.04755 1.21295 1.35697 1.19692 0.90328 0.96641 0.85785 0.98252 1.22191 0.99193 0.97236 1.01439 1.20903 1.47993 0.89714 0.93898 0.89777 1.24936 0.95171 0.94758 0.98400 1.69881 1.50162 1.10228 1.23314 0.87075 0.78823 0.81216 0.83627 1.20562 1.21482 1.18945 1.21812 1.00104 0.88279 0.92739 1.23002 1.01552 0.97437 1.01257 1.21950 0.99764 0.94835 0.90361 1.60731 1.13679 1.50553 1.06608 1.22019 1.00969 0.89633 0.94632 1.22385 1.00789 0.97635 0.98176 0.93251 0.93903 0.94377 0.87039 0.92359 0.93027 0.96543 0.95805 0.93240 0.92837 0.92705 0.89877 0.92135 0.91341 0.91138 0.91392 0.84642 0.91096 0.91051 0.90874 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.91 37.16 0.37 -2.14 16 2 C -0.13 -2.62 5.02 -26.73 -0.13 -2.75 16 3 C 0.07 1.37 3.86 -3.82 -0.01 1.36 16 4 N -0.52 -10.35 4.40 -219.96 -0.97 -11.31 16 5 C 0.18 4.14 1.01 -68.87 -0.07 4.07 16 6 H 0.00 0.00 4.82 -51.93 -0.25 -0.25 16 7 C -0.14 -3.00 7.64 37.16 0.28 -2.71 16 8 C -0.49 -12.93 5.76 -34.44 -0.20 -13.13 16 9 H 0.08 2.49 7.70 -52.48 -0.40 2.08 16 10 C 0.07 1.90 5.33 -17.82 -0.10 1.81 16 11 N -0.90 -26.47 13.96 55.43 0.77 -25.70 16 12 Si 0.86 21.11 26.26 -169.99 -4.46 16.64 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.26 -6.20 6.19 56.52 0.35 -5.85 16 16 C 0.08 1.31 1.76 -67.59 -0.12 1.19 16 17 C -0.19 -2.92 4.51 -26.65 -0.12 -3.05 16 18 C 0.06 0.78 6.55 -3.83 -0.03 0.76 16 19 N -0.69 -8.25 6.87 -113.82 -0.78 -9.03 16 20 C 0.06 0.68 6.55 -3.84 -0.03 0.65 16 21 C -0.15 -2.08 5.27 -26.65 -0.14 -2.23 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.11 2.74 5.35 -51.93 -0.28 2.46 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 0.88 5.61 -51.93 -0.29 0.59 16 28 H 0.02 0.33 6.92 -51.93 -0.36 -0.03 16 29 H 0.02 0.43 5.82 -51.93 -0.30 0.13 16 30 H 0.05 1.08 6.86 -51.93 -0.36 0.73 16 31 H 0.05 1.11 8.12 -51.93 -0.42 0.69 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.08 1.42 6.00 -51.93 -0.31 1.11 16 34 H 0.06 0.94 6.66 -51.93 -0.35 0.60 16 35 H 0.07 1.17 6.36 -51.93 -0.33 0.84 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.34 3.76 8.86 -39.29 -0.35 3.41 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.87 6.01 -51.93 -0.31 0.56 16 LS Contribution 301.75 15.07 4.55 4.55 Total: -1.00 -27.67 301.75 -8.48 -36.16 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.30 Total: 4.86 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -0.29 Total: -16.16 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.97 Total: -46.04 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.46 Total: 16.64 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.67 -8.48 -36.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.477 kcal (2) G-P(sol) polarization free energy of solvation -27.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds