Wall clock time and date at job start Mon Mar 30 2020 03:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47095 * 2 1 4 4 N 1.46896 * 109.46861 * 185.92145 * 3 2 1 5 5 C 1.46898 * 111.00376 * 287.22481 * 4 3 2 6 6 H 1.08994 * 109.47251 * 313.34076 * 5 4 3 7 7 C 1.53000 * 109.47418 * 193.33430 * 5 4 3 8 8 C 1.50699 * 109.46666 * 73.33453 * 5 4 3 9 9 H 1.08004 * 120.00167 * 29.99065 * 8 5 4 10 10 C 1.37880 * 120.00110 * 209.97989 * 8 5 4 11 11 N 1.31513 * 120.00182 * 178.99473 * 10 8 5 12 12 Si 1.86798 * 119.99791 * 359.00123 * 10 8 5 13 13 H 1.48499 * 109.47281 * 86.43254 * 12 10 8 14 14 H 1.48508 * 109.46870 * 206.43115 * 12 10 8 15 15 H 1.48494 * 109.47210 * 326.42933 * 12 10 8 16 16 C 1.46905 * 110.99733 * 163.27555 * 4 3 2 17 17 C 1.53119 * 109.52251 * 58.82735 * 16 4 3 18 18 C 1.53044 * 109.27317 * 182.50634 * 17 16 4 19 19 N 1.46842 * 109.57710 * 59.08421 * 18 17 16 20 20 C 1.46847 * 111.19874 * 298.29144 * 19 18 17 21 21 C 1.53028 * 109.52485 * 61.73878 * 20 19 18 22 22 H 1.09001 * 109.46864 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47490 * 300.00017 * 1 2 3 24 24 H 1.09000 * 109.47040 * 60.00039 * 1 2 3 25 25 H 1.09000 * 109.47040 * 119.99961 * 2 1 3 26 26 H 1.08999 * 109.47490 * 239.99983 * 2 1 3 27 27 H 1.08997 * 109.46910 * 305.92253 * 3 2 1 28 28 H 1.08996 * 109.46761 * 65.92271 * 3 2 1 29 29 H 1.09003 * 109.46859 * 65.92910 * 7 5 4 30 30 H 1.08997 * 109.46933 * 185.92291 * 7 5 4 31 31 H 1.08997 * 109.46942 * 305.92792 * 7 5 4 32 32 H 0.97003 * 120.00000 * 180.02562 * 11 10 8 33 33 H 1.08999 * 109.52366 * 178.95082 * 16 4 3 34 34 H 1.09002 * 109.50471 * 302.37821 * 17 16 4 35 35 H 1.09000 * 109.50683 * 62.49686 * 17 16 4 36 36 H 1.08994 * 109.40948 * 299.06451 * 18 17 16 37 37 H 1.09004 * 109.45063 * 179.12600 * 18 17 16 38 38 H 1.00902 * 111.00363 * 62.38420 * 19 18 17 39 39 H 1.09003 * 109.45844 * 301.72415 * 20 19 18 40 40 H 1.09003 * 109.45564 * 181.75865 * 20 19 18 41 41 H 1.09004 * 109.50368 * 180.88091 * 21 20 19 42 42 H 1.09003 * 109.53229 * 60.78658 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5020 1.4450 -0.1429 5 6 4.1527 0.9949 1.0948 6 1 3.7045 1.5052 1.9473 7 6 5.6464 1.3204 1.0332 8 6 3.9687 -0.4930 1.2466 9 1 3.8843 -1.1189 0.3705 10 6 3.9081 -1.0555 2.5040 11 7 3.7277 -2.3514 2.6367 12 14 4.0822 0.0232 4.0191 13 1 2.7539 0.5738 4.3900 14 1 4.6144 -0.7863 5.1446 15 1 5.0168 1.1397 3.7271 16 6 3.9898 2.7721 -0.5415 17 6 3.5741 3.8065 0.5082 18 6 4.0306 5.1958 0.0567 19 7 3.4227 5.5157 -1.2412 20 6 3.8464 4.5630 -2.2752 21 6 3.3832 3.1552 -1.8942 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.5927 1.9860 -0.8322 28 1 1.7658 1.9248 0.9382 29 1 5.7828 2.4019 1.0295 30 1 6.1473 0.8941 1.9024 31 1 6.0733 0.8972 0.1240 32 1 3.6847 -2.7471 3.5214 33 1 5.0766 2.7516 -0.6223 34 1 2.4896 3.7986 0.6175 35 1 4.0386 3.5624 1.4636 36 1 5.1163 5.2073 -0.0380 37 1 3.7225 5.9367 0.7945 38 1 2.4167 5.5494 -1.1709 39 1 4.9331 4.5775 -2.3591 40 1 3.4047 4.8445 -3.2312 41 1 3.7113 2.4460 -2.6541 42 1 2.2956 3.1359 -1.8239 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048247277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:14 Heat of formation + Delta-G solvation = -22.570636 kcal Electronic energy + Delta-G solvation = -19059.759477 eV Core-core repulsion = 16459.392577 eV Total energy + Delta-G solvation = -2600.366900 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83875 -37.87798 -34.82520 -34.33363 -32.31672 -31.63097 -29.98608 -27.40451 -25.95953 -24.09892 -23.60011 -22.41308 -21.73165 -19.92497 -18.89040 -17.13210 -16.77907 -16.24757 -16.00155 -15.64896 -15.46318 -15.22045 -14.74173 -14.43580 -14.14069 -13.86881 -13.59505 -13.46430 -13.09627 -12.93749 -12.71471 -12.58047 -12.47810 -12.25374 -12.13281 -12.02407 -11.77251 -11.72499 -11.43094 -11.31570 -11.10931 -10.98127 -10.53615 -9.37045 -8.82899 -8.23478 -6.18182 1.27512 1.31621 1.39852 2.33300 3.02263 3.27245 3.47102 3.79911 3.97591 4.16989 4.22434 4.33640 4.36877 4.45446 4.49934 4.52924 4.57081 4.65648 4.75424 4.76142 4.82952 4.88783 4.92663 4.97522 5.02473 5.08410 5.09410 5.14979 5.28509 5.30092 5.38310 5.46876 5.53107 5.71933 5.88590 6.08666 6.16996 6.49746 6.53027 6.78972 6.84449 7.40407 8.92864 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024014 B = 0.008961 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.701305 B = 3123.959844 C = 3710.111339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.078 3.922 4 N -0.534 5.534 5 C 0.187 3.813 6 H -0.008 1.008 7 C -0.136 4.136 8 C -0.471 4.471 9 H 0.040 0.960 10 C 0.015 3.985 11 N -0.946 5.946 12 Si 0.920 3.080 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.246 1.246 16 C 0.077 3.923 17 C -0.185 4.185 18 C 0.069 3.931 19 N -0.685 5.685 20 C 0.064 3.936 21 C -0.142 4.142 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.010 0.990 29 H 0.052 0.948 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.262 0.738 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.344 0.656 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.365 15.176 -6.429 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C -0.049 4.049 4 N -0.256 5.256 5 C 0.080 3.920 6 H 0.010 0.990 7 C -0.194 4.194 8 C -0.510 4.510 9 H 0.058 0.942 10 C -0.182 4.182 11 N -0.587 5.587 12 Si 0.746 3.254 13 H -0.203 1.203 14 H -0.216 1.216 15 H -0.169 1.169 16 C -0.031 4.031 17 C -0.226 4.226 18 C -0.062 4.062 19 N -0.313 5.313 20 C -0.066 4.066 21 C -0.181 4.181 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.162 0.838 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.754 15.180 -6.848 16.745 hybrid contribution -0.615 -0.808 2.046 2.284 sum -2.369 14.372 -4.802 15.337 Atomic orbital electron populations 1.21704 0.95302 1.01258 1.01504 1.21715 0.94930 0.97101 1.02528 1.21920 0.88105 0.96505 0.98403 1.62239 1.05231 1.24173 1.33992 1.19503 0.91722 0.93838 0.86976 0.99002 1.22066 0.97465 0.99085 1.00772 1.20994 1.46183 0.91612 0.92233 0.94170 1.25616 0.95457 0.95725 1.01360 1.70026 1.52711 1.12177 1.23811 0.86162 0.79169 0.80036 0.80021 1.20275 1.21579 1.16921 1.21910 0.99920 0.86721 0.94595 1.22928 1.01204 0.98638 0.99803 1.21904 0.99877 0.93356 0.91041 1.60739 1.14303 1.50136 1.06104 1.22016 1.01187 0.87961 0.95411 1.22332 1.00599 0.98999 0.96220 0.93315 0.93317 0.91555 0.91801 0.94060 0.90217 0.97179 0.92880 0.94366 0.93118 0.92899 0.90434 0.92382 0.93203 0.91012 0.90030 0.83799 0.91015 0.88982 0.91454 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.91 71.98 0.71 -3.88 16 2 C -0.12 -5.17 5.02 30.60 0.15 -5.02 16 3 C 0.08 2.91 3.86 86.31 0.33 3.24 16 4 N -0.53 -20.95 4.40 -849.81 -3.74 -24.69 16 5 C 0.19 8.49 1.01 44.17 0.04 8.53 16 6 H -0.01 -0.35 4.82 -2.39 -0.01 -0.37 16 7 C -0.14 -5.58 7.64 71.98 0.55 -5.03 16 8 C -0.47 -25.95 5.76 25.60 0.15 -25.81 16 9 H 0.04 2.52 7.70 -2.91 -0.02 2.50 16 10 C 0.02 0.87 5.33 84.66 0.45 1.32 16 11 N -0.95 -58.26 13.96 21.45 0.30 -57.96 16 12 Si 0.92 44.02 26.26 68.60 1.80 45.82 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 15 H -0.25 -10.87 6.19 99.48 0.62 -10.26 16 16 C 0.08 2.37 1.76 44.99 0.08 2.45 16 17 C -0.18 -5.16 4.51 30.65 0.14 -5.02 16 18 C 0.07 1.51 6.55 86.33 0.57 2.08 16 19 N -0.68 -13.75 6.87 -514.02 -3.53 -17.28 16 20 C 0.06 1.28 6.55 86.32 0.57 1.84 16 21 C -0.14 -3.53 5.27 30.64 0.16 -3.37 16 22 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.06 3.28 5.35 -2.39 -0.01 3.27 16 26 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.08 2.51 5.61 -2.39 -0.01 2.50 16 28 H 0.01 0.39 6.92 -2.39 -0.02 0.37 16 29 H 0.05 1.85 5.82 -2.39 -0.01 1.84 16 30 H 0.04 1.63 6.86 -2.39 -0.02 1.61 16 31 H 0.05 2.08 8.12 -2.39 -0.02 2.06 16 32 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.08 2.48 6.00 -2.39 -0.01 2.47 16 34 H 0.06 1.65 6.66 -2.39 -0.02 1.63 16 35 H 0.05 1.58 6.36 -2.39 -0.02 1.57 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.34 6.27 8.86 -89.69 -0.79 5.47 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.06 1.57 6.01 -2.39 -0.01 1.55 16 Total: -1.00 -61.81 301.75 -1.16 -62.97 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.10 Total: 19.79 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 3.90 Total: -28.65 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -6.97 Total: -99.93 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.80 Total: 45.82 kcal Total: -61.81 -1.16 -62.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.396 kcal (2) G-P(sol) polarization free energy of solvation -61.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds