Wall clock time and date at job start Mon Mar 30 2020 03:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46856 * 2 1 4 4 H 1.08993 * 109.46920 * 177.48994 * 3 2 1 5 5 C 1.50699 * 109.47118 * 297.49441 * 3 2 1 6 6 H 1.07996 * 120.00270 * 119.99452 * 5 3 2 7 7 C 1.37885 * 119.99879 * 300.00116 * 5 3 2 8 8 N 1.31509 * 119.99885 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00048 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46972 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47433 * 119.99499 * 9 7 5 12 12 H 1.48500 * 109.46760 * 239.99763 * 9 7 5 13 13 N 1.46901 * 109.46714 * 57.49298 * 3 2 1 14 14 C 1.46906 * 110.99412 * 182.36190 * 13 3 2 15 15 C 1.46896 * 111.00419 * 58.40877 * 13 3 2 16 16 H 1.09005 * 109.49905 * 308.21566 * 15 13 3 17 17 C 1.53115 * 109.50473 * 188.13578 * 15 13 3 18 18 C 1.53121 * 109.15983 * 182.40363 * 17 15 13 19 19 C 1.53032 * 109.28239 * 57.65315 * 18 17 15 20 20 N 1.46853 * 109.51105 * 300.82841 * 19 18 17 21 21 C 1.46908 * 110.99626 * 185.83098 * 20 19 18 22 22 C 1.46821 * 111.21338 * 61.74737 * 20 19 18 23 23 H 1.09005 * 109.46550 * 175.87887 * 1 2 3 24 24 H 1.09001 * 109.47198 * 295.87925 * 1 2 3 25 25 H 1.08996 * 109.47368 * 55.88617 * 1 2 3 26 26 H 1.08999 * 109.47416 * 240.00132 * 2 1 3 27 27 H 1.08998 * 109.47397 * 119.99929 * 2 1 3 28 28 H 0.97002 * 120.00059 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.46620 * 296.04366 * 14 13 3 30 30 H 1.08991 * 109.47332 * 56.04672 * 14 13 3 31 31 H 1.09000 * 109.46463 * 176.04610 * 14 13 3 32 32 H 1.09003 * 109.52127 * 62.50020 * 17 15 13 33 33 H 1.08997 * 109.52447 * 302.30901 * 17 15 13 34 34 H 1.09003 * 109.49891 * 297.70886 * 18 17 15 35 35 H 1.09002 * 109.53366 * 177.61912 * 18 17 15 36 36 H 1.09001 * 109.46369 * 60.83190 * 19 18 17 37 37 H 1.08989 * 109.46719 * 180.81656 * 19 18 17 38 38 H 1.08995 * 109.46813 * 56.04480 * 21 20 19 39 39 H 1.08999 * 109.46531 * 176.04570 * 21 20 19 40 40 H 1.08999 * 109.46869 * 296.04333 * 21 20 19 41 41 H 1.08992 * 109.46965 * 178.23429 * 22 20 19 42 42 H 1.09001 * 109.46635 * 58.26040 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1290 1.4429 0.0450 5 6 1.5890 2.1348 -1.2603 6 1 0.9647 3.0140 -1.1998 7 6 1.9733 1.6456 -2.4909 8 7 2.7338 0.5753 -2.5646 9 14 1.4149 2.5040 -4.0531 10 1 0.5741 3.6762 -3.7003 11 1 2.6026 2.9590 -4.8196 12 1 0.6235 1.5590 -4.8813 13 7 1.5014 2.1522 1.1680 14 6 1.9255 3.5587 1.1710 15 6 1.8901 1.4826 2.4163 16 1 1.6321 0.4251 2.3575 17 6 1.1500 2.1247 3.5929 18 6 1.6056 1.4614 4.8956 19 6 3.1224 1.6097 5.0346 20 7 3.7842 0.9790 3.8853 21 6 5.2437 0.9801 4.0525 22 6 3.3987 1.6302 2.6271 23 1 -0.3632 -1.0251 -0.0739 24 1 -0.3633 0.4486 0.9246 25 1 -0.3634 0.5763 -0.8508 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.0045 0.2313 -3.4303 29 1 3.0095 3.6111 1.2729 30 1 1.6253 4.0308 0.2356 31 1 1.4565 4.0778 2.0069 32 1 0.0763 1.9837 3.4685 33 1 1.3767 3.1903 3.6280 34 1 1.3436 0.4035 4.8762 35 1 1.1139 1.9426 5.7410 36 1 3.3824 2.6677 5.0676 37 1 3.4519 1.1258 5.9539 38 1 5.5023 0.4879 4.9900 39 1 5.7049 0.4456 3.2221 40 1 5.6067 2.0078 4.0695 41 1 3.9288 1.1614 1.7981 42 1 3.6573 2.6881 2.6715 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053245257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:10 Heat of formation + Delta-G solvation = 7.091122 kcal Electronic energy + Delta-G solvation = -18988.472727 eV Core-core repulsion = 16389.392058 eV Total energy + Delta-G solvation = -2599.080669 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.31598 -36.49382 -33.48260 -32.32572 -30.91658 -29.10581 -26.64403 -26.11806 -25.15237 -23.14185 -22.31456 -21.46531 -19.53166 -18.30381 -16.13647 -15.51517 -15.37354 -14.82989 -14.46335 -14.16981 -13.79675 -13.54048 -13.14154 -12.84693 -12.40571 -12.25449 -12.09425 -11.93316 -11.62791 -11.43814 -11.16199 -10.94303 -10.87811 -10.74879 -10.44616 -10.37213 -10.10870 -10.03556 -9.73158 -9.48518 -9.32336 -8.73200 -8.36421 -8.10754 -7.03395 -5.97185 -4.00498 3.30747 3.39137 3.42960 4.13859 4.43688 4.92940 5.15412 5.20415 5.32571 5.37837 5.41030 5.57035 5.58421 5.75007 5.83165 5.94491 5.96822 6.03051 6.13104 6.22012 6.28473 6.31750 6.42132 6.56203 6.65125 6.66012 6.77924 6.86186 6.88476 7.21588 7.24763 7.29136 7.41644 7.49842 7.72325 7.83742 7.87776 8.25208 8.40061 8.66970 9.05453 9.63264 11.09023 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032869 B = 0.006960 C = 0.006739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.658274 B = 4021.963613 C = 4153.870749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.496 4.496 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.524 5.524 14 C 0.031 3.969 15 C 0.085 3.915 16 H 0.090 0.910 17 C -0.112 4.112 18 C -0.115 4.115 19 C 0.057 3.943 20 N -0.540 5.540 21 C 0.027 3.973 22 C 0.025 3.975 23 H 0.015 0.985 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.016 0.984 28 H 0.259 0.741 29 H 0.011 0.989 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.019 0.981 41 H 0.078 0.922 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.715 1.696 12.318 12.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.110 3.890 4 H 0.016 0.984 5 C -0.535 4.535 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.247 5.247 14 C -0.118 4.118 15 C -0.024 4.024 16 H 0.108 0.892 17 C -0.150 4.150 18 C -0.153 4.153 19 C -0.071 4.071 20 N -0.265 5.265 21 C -0.122 4.122 22 C -0.104 4.104 23 H 0.034 0.966 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.038 0.962 41 H 0.096 0.904 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.122 1.091 12.095 12.145 hybrid contribution 1.076 1.280 -0.854 1.877 sum 1.198 2.371 11.241 11.551 Atomic orbital electron populations 1.21464 0.97397 0.97522 1.01406 1.21575 0.95053 0.98235 1.00199 1.19275 0.92437 0.90811 0.86472 0.98383 1.21145 1.30739 1.11830 0.89770 0.91967 1.24900 0.95274 0.95090 0.98901 1.69890 1.36274 1.22536 1.24414 0.86545 0.78346 0.79640 0.83511 1.19811 1.21282 1.21076 1.62390 1.59066 1.01539 1.01735 1.22290 0.96767 0.91221 1.01510 1.21745 0.90238 1.00077 0.90375 0.89173 1.21648 1.00595 0.99201 0.93575 1.21570 0.94352 1.01741 0.97688 1.22074 0.95203 0.96418 0.93438 1.61915 1.06886 1.55106 1.02550 1.22332 0.88219 0.99504 1.02144 1.22891 0.99774 0.96455 0.91265 0.96624 0.94082 0.92381 0.89084 0.96516 0.93135 0.97035 0.90648 0.93816 0.91332 0.92624 0.91188 0.91939 0.95522 0.91388 0.91830 0.91371 0.96198 0.90391 0.95051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.52 37.16 0.35 -2.32 16 2 C -0.11 -2.70 5.04 -26.73 -0.13 -2.83 16 3 C 0.22 5.29 1.49 -68.86 -0.10 5.19 16 4 H 0.00 -0.04 6.64 -51.93 -0.34 -0.38 16 5 C -0.50 -13.22 6.67 -34.44 -0.23 -13.45 16 6 H 0.06 1.67 6.52 -52.49 -0.34 1.33 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.14 11.30 55.43 0.63 -24.51 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.52 -11.00 3.80 -228.20 -0.87 -11.86 16 14 C 0.03 0.60 8.54 60.07 0.51 1.11 16 15 C 0.09 1.56 2.10 -67.64 -0.14 1.42 16 16 H 0.09 1.80 5.91 -51.93 -0.31 1.50 16 17 C -0.11 -1.72 5.22 -26.61 -0.14 -1.86 16 18 C -0.12 -1.49 6.09 -26.65 -0.16 -1.65 16 19 C 0.06 0.75 5.47 -3.83 -0.02 0.73 16 20 N -0.54 -8.32 4.91 -242.98 -1.19 -9.51 16 21 C 0.03 0.35 9.59 60.07 0.58 0.93 16 22 C 0.03 0.45 4.03 -3.85 -0.02 0.44 16 23 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.04 0.86 7.65 -51.93 -0.40 0.46 16 25 H 0.06 1.39 7.16 -51.93 -0.37 1.02 16 26 H 0.09 2.45 6.01 -51.93 -0.31 2.14 16 27 H 0.02 0.37 6.34 -51.93 -0.33 0.04 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.01 0.22 6.21 -51.93 -0.32 -0.10 16 30 H 0.07 1.58 6.20 -51.93 -0.32 1.26 16 31 H 0.04 0.75 6.37 -51.93 -0.33 0.42 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.85 6.40 -51.93 -0.33 0.51 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.78 8.09 -51.94 -0.42 0.36 16 38 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 1.58 6.68 -51.93 -0.35 1.24 16 42 H 0.03 0.57 6.29 -51.93 -0.33 0.24 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -27.42 305.78 -8.76 -36.19 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.32 Total: -0.30 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 0.40 Total: -10.79 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -1.43 Total: -45.89 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.42 -8.76 -36.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053245257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.280 kcal (2) G-P(sol) polarization free energy of solvation -27.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds