Wall clock time and date at job start Mon Mar 30 2020 03:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46856 * 2 1 4 4 H 1.08993 * 109.46920 * 177.48994 * 3 2 1 5 5 C 1.50699 * 109.47118 * 297.49441 * 3 2 1 6 6 H 1.07996 * 120.00270 * 119.99452 * 5 3 2 7 7 C 1.37885 * 119.99879 * 300.00116 * 5 3 2 8 8 N 1.31509 * 119.99885 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00048 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46972 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47433 * 119.99499 * 9 7 5 12 12 H 1.48500 * 109.46760 * 239.99763 * 9 7 5 13 13 N 1.46901 * 109.46714 * 57.49298 * 3 2 1 14 14 C 1.46906 * 110.99412 * 182.36190 * 13 3 2 15 15 C 1.46896 * 111.00419 * 58.40877 * 13 3 2 16 16 H 1.09005 * 109.49905 * 308.21566 * 15 13 3 17 17 C 1.53115 * 109.50473 * 188.13578 * 15 13 3 18 18 C 1.53121 * 109.15983 * 182.40363 * 17 15 13 19 19 C 1.53032 * 109.28239 * 57.65315 * 18 17 15 20 20 N 1.46853 * 109.51105 * 300.82841 * 19 18 17 21 21 C 1.46908 * 110.99626 * 185.83098 * 20 19 18 22 22 C 1.46821 * 111.21338 * 61.74737 * 20 19 18 23 23 H 1.09005 * 109.46550 * 175.87887 * 1 2 3 24 24 H 1.09001 * 109.47198 * 295.87925 * 1 2 3 25 25 H 1.08996 * 109.47368 * 55.88617 * 1 2 3 26 26 H 1.08999 * 109.47416 * 240.00132 * 2 1 3 27 27 H 1.08998 * 109.47397 * 119.99929 * 2 1 3 28 28 H 0.97002 * 120.00059 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.46620 * 296.04366 * 14 13 3 30 30 H 1.08991 * 109.47332 * 56.04672 * 14 13 3 31 31 H 1.09000 * 109.46463 * 176.04610 * 14 13 3 32 32 H 1.09003 * 109.52127 * 62.50020 * 17 15 13 33 33 H 1.08997 * 109.52447 * 302.30901 * 17 15 13 34 34 H 1.09003 * 109.49891 * 297.70886 * 18 17 15 35 35 H 1.09002 * 109.53366 * 177.61912 * 18 17 15 36 36 H 1.09001 * 109.46369 * 60.83190 * 19 18 17 37 37 H 1.08989 * 109.46719 * 180.81656 * 19 18 17 38 38 H 1.08995 * 109.46813 * 56.04480 * 21 20 19 39 39 H 1.08999 * 109.46531 * 176.04570 * 21 20 19 40 40 H 1.08999 * 109.46869 * 296.04333 * 21 20 19 41 41 H 1.08992 * 109.46965 * 178.23429 * 22 20 19 42 42 H 1.09001 * 109.46635 * 58.26040 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1290 1.4429 0.0450 5 6 1.5890 2.1348 -1.2603 6 1 0.9647 3.0140 -1.1998 7 6 1.9733 1.6456 -2.4909 8 7 2.7338 0.5753 -2.5646 9 14 1.4149 2.5040 -4.0531 10 1 0.5741 3.6762 -3.7003 11 1 2.6026 2.9590 -4.8196 12 1 0.6235 1.5590 -4.8813 13 7 1.5014 2.1522 1.1680 14 6 1.9255 3.5587 1.1710 15 6 1.8901 1.4826 2.4163 16 1 1.6321 0.4251 2.3575 17 6 1.1500 2.1247 3.5929 18 6 1.6056 1.4614 4.8956 19 6 3.1224 1.6097 5.0346 20 7 3.7842 0.9790 3.8853 21 6 5.2437 0.9801 4.0525 22 6 3.3987 1.6302 2.6271 23 1 -0.3632 -1.0251 -0.0739 24 1 -0.3633 0.4486 0.9246 25 1 -0.3634 0.5763 -0.8508 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.0045 0.2313 -3.4303 29 1 3.0095 3.6111 1.2729 30 1 1.6253 4.0308 0.2356 31 1 1.4565 4.0778 2.0069 32 1 0.0763 1.9837 3.4685 33 1 1.3767 3.1903 3.6280 34 1 1.3436 0.4035 4.8762 35 1 1.1139 1.9426 5.7410 36 1 3.3824 2.6677 5.0676 37 1 3.4519 1.1258 5.9539 38 1 5.5023 0.4879 4.9900 39 1 5.7049 0.4456 3.2221 40 1 5.6067 2.0078 4.0695 41 1 3.9288 1.1614 1.7981 42 1 3.6573 2.6881 2.6715 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053245257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:10 Heat of formation + Delta-G solvation = -10.377644 kcal Electronic energy + Delta-G solvation = -18989.230230 eV Core-core repulsion = 16389.392058 eV Total energy + Delta-G solvation = -2599.838172 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.73158 -38.04956 -35.17823 -33.74018 -32.81528 -30.56763 -28.23438 -27.58121 -26.87962 -24.80257 -23.66949 -22.93921 -21.07561 -19.89844 -18.10174 -17.10992 -16.85433 -16.34868 -15.81832 -15.70749 -15.31713 -15.11738 -14.70191 -14.16580 -14.06451 -13.84564 -13.53184 -13.39064 -13.14159 -12.84721 -12.77247 -12.62971 -12.57724 -12.20904 -12.15276 -12.05461 -11.69078 -11.51008 -11.37358 -11.27558 -10.99362 -10.70965 -10.42460 -9.33237 -8.76293 -8.06012 -6.15762 1.40526 1.43366 1.53899 2.44050 2.95336 3.22571 3.46669 3.90244 3.99200 4.13413 4.21592 4.35869 4.47700 4.51640 4.60540 4.62128 4.67303 4.72993 4.77676 4.77949 4.88973 4.93792 4.96086 4.98883 5.05931 5.14967 5.21028 5.31611 5.38256 5.48543 5.51542 5.57717 5.75833 5.82006 5.88759 6.06886 6.18143 6.35216 6.47309 6.83346 6.98826 7.51864 8.99472 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032869 B = 0.006960 C = 0.006739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.658274 B = 4021.963613 C = 4153.870749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.106 4.106 3 C 0.226 3.774 4 H -0.041 1.041 5 C -0.504 4.504 6 H 0.058 0.942 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.528 5.528 14 C 0.036 3.964 15 C 0.086 3.914 16 H 0.072 0.928 17 C -0.106 4.106 18 C -0.109 4.109 19 C 0.055 3.945 20 N -0.553 5.553 21 C 0.026 3.974 22 C 0.040 3.960 23 H 0.034 0.966 24 H 0.052 0.948 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.023 0.977 28 H 0.259 0.741 29 H 0.005 0.995 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.030 0.970 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.023 0.977 41 H 0.040 0.960 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 2.385 14.204 14.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.145 4.145 3 C 0.119 3.881 4 H -0.023 1.023 5 C -0.543 4.543 6 H 0.076 0.924 7 C -0.186 4.186 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.251 5.251 14 C -0.112 4.112 15 C -0.023 4.023 16 H 0.090 0.910 17 C -0.144 4.144 18 C -0.148 4.148 19 C -0.073 4.073 20 N -0.278 5.278 21 C -0.122 4.122 22 C -0.090 4.090 23 H 0.053 0.947 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.048 0.952 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.058 0.942 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.766 1.788 14.005 14.140 hybrid contribution 1.395 1.051 -1.374 2.222 sum 0.628 2.839 12.631 12.961 Atomic orbital electron populations 1.21315 0.95674 0.98476 1.00995 1.21427 0.96421 0.97676 0.98934 1.18995 0.90106 0.91442 0.87566 1.02327 1.21373 1.30349 1.11683 0.90862 0.92430 1.25622 0.95437 0.95707 1.01793 1.70029 1.37287 1.23742 1.24949 0.85603 0.77910 0.78759 0.79952 1.19137 1.21084 1.20808 1.62341 1.58842 1.02096 1.01786 1.22254 0.96640 0.90515 1.01822 1.21769 0.91108 0.99125 0.90343 0.90993 1.21604 1.00175 0.99319 0.93259 1.21570 0.94399 1.01587 0.97202 1.22205 0.95135 0.96757 0.93170 1.61912 1.08373 1.55219 1.02263 1.22379 0.86892 0.99915 1.02999 1.22582 0.98907 0.95848 0.91689 0.94721 0.92882 0.94438 0.92199 0.95851 0.93218 0.97624 0.92411 0.90770 0.91174 0.92171 0.91528 0.88852 0.95171 0.88897 0.89196 0.92600 0.95809 0.94152 0.95472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.73 9.52 71.98 0.69 -4.05 16 2 C -0.11 -5.23 5.04 30.60 0.15 -5.07 16 3 C 0.23 11.42 1.49 44.17 0.07 11.49 16 4 H -0.04 -2.34 6.64 -2.39 -0.02 -2.36 16 5 C -0.50 -27.44 6.67 25.60 0.17 -27.27 16 6 H 0.06 3.13 6.52 -2.91 -0.02 3.12 16 7 C 0.01 0.70 5.30 84.66 0.45 1.15 16 8 N -0.92 -53.39 11.30 21.45 0.24 -53.15 16 9 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 13 N -0.53 -22.23 3.80 -875.89 -3.32 -25.55 16 14 C 0.04 1.40 8.54 127.69 1.09 2.49 16 15 C 0.09 3.10 2.10 44.97 0.09 3.20 16 16 H 0.07 2.87 5.91 -2.38 -0.01 2.85 16 17 C -0.11 -2.98 5.22 30.67 0.16 -2.82 16 18 C -0.11 -2.46 6.09 30.65 0.19 -2.27 16 19 C 0.05 1.26 5.47 86.32 0.47 1.73 16 20 N -0.55 -16.30 4.91 -922.66 -4.53 -20.83 16 21 C 0.03 0.66 9.59 127.69 1.22 1.88 16 22 C 0.04 1.42 4.03 86.33 0.35 1.76 16 23 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.05 2.18 7.65 -2.39 -0.02 2.16 16 25 H 0.04 1.78 7.16 -2.39 -0.02 1.77 16 26 H 0.06 3.34 6.01 -2.39 -0.01 3.32 16 27 H 0.02 1.08 6.34 -2.39 -0.02 1.07 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.01 0.21 6.21 -2.39 -0.01 0.20 16 30 H 0.06 2.43 6.20 -2.39 -0.01 2.42 16 31 H 0.07 2.41 6.37 -2.39 -0.02 2.40 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 1.65 6.40 -2.39 -0.02 1.63 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 1.73 8.09 -2.39 -0.02 1.71 16 38 H 0.09 1.78 8.10 -2.39 -0.02 1.76 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.04 1.73 6.68 -2.39 -0.02 1.71 16 42 H 0.03 0.98 6.29 -2.39 -0.02 0.97 16 Total: -1.00 -60.08 305.78 0.48 -59.59 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.97 Total: 11.67 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 5.10 Total: -17.77 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -7.61 Total: -99.53 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -60.08 0.48 -59.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053245257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.215 kcal (2) G-P(sol) polarization free energy of solvation -60.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds