Wall clock time and date at job start Mon Mar 30 2020 03:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47091 * 2 1 4 4 H 1.08999 * 109.47085 * 302.51475 * 3 2 1 5 5 C 1.50697 * 109.47264 * 182.50884 * 3 2 1 6 6 H 1.07998 * 120.00587 * 240.00469 * 5 3 2 7 7 C 1.37879 * 119.99624 * 60.00344 * 5 3 2 8 8 N 1.31516 * 120.00135 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99887 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47132 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47248 * 120.00082 * 9 7 5 12 12 H 1.48502 * 109.46834 * 239.99651 * 9 7 5 13 13 N 1.46906 * 109.47046 * 62.51041 * 3 2 1 14 14 C 1.46899 * 110.99774 * 63.45170 * 13 3 2 15 15 C 1.46901 * 111.00090 * 187.40196 * 13 3 2 16 16 H 1.09000 * 109.50295 * 303.16567 * 15 13 3 17 17 C 1.53114 * 109.50247 * 183.08413 * 15 13 3 18 18 C 1.53118 * 109.15950 * 182.36794 * 17 15 13 19 19 C 1.53037 * 109.28070 * 57.65473 * 18 17 15 20 20 N 1.46846 * 109.51462 * 300.82794 * 19 18 17 21 21 C 1.46896 * 110.99852 * 185.83082 * 20 19 18 22 22 C 1.46832 * 111.20917 * 61.74552 * 20 19 18 23 23 H 1.09002 * 109.47559 * 294.75042 * 1 2 3 24 24 H 1.09005 * 109.47410 * 54.74934 * 1 2 3 25 25 H 1.08998 * 109.47584 * 174.74664 * 1 2 3 26 26 H 1.08996 * 109.47369 * 240.00068 * 2 1 3 27 27 H 1.08996 * 109.46844 * 119.99886 * 2 1 3 28 28 H 0.96999 * 120.00270 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47444 * 183.95404 * 14 13 3 30 30 H 1.09001 * 109.47534 * 303.95100 * 14 13 3 31 31 H 1.09006 * 109.47305 * 63.94958 * 14 13 3 32 32 H 1.08995 * 109.52533 * 62.46323 * 17 15 13 33 33 H 1.08997 * 109.52524 * 302.27486 * 17 15 13 34 34 H 1.08998 * 109.50502 * 297.71256 * 18 17 15 35 35 H 1.09007 * 109.50479 * 177.59666 * 18 17 15 36 36 H 1.09006 * 109.45639 * 60.83675 * 19 18 17 37 37 H 1.09002 * 109.46465 * 180.81549 * 19 18 17 38 38 H 1.09004 * 109.47154 * 56.04867 * 21 20 19 39 39 H 1.08999 * 109.46915 * 176.04538 * 21 20 19 40 40 H 1.08993 * 109.47228 * 296.04305 * 21 20 19 41 41 H 1.08995 * 109.46174 * 178.23861 * 22 20 19 42 42 H 1.09000 * 109.46575 * 58.26520 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6403 1.9692 -0.8666 5 6 3.5457 1.4430 -0.0622 6 1 4.1189 1.8989 0.7315 7 6 4.1916 0.8614 -1.1325 8 7 3.4937 0.3058 -2.0989 9 14 6.0580 0.8613 -1.2093 10 1 6.6029 1.5427 -0.0077 11 1 6.5517 -0.5386 -1.2505 12 1 6.5031 1.5793 -2.4307 13 7 1.6005 2.1173 1.2287 14 6 2.1875 1.4829 2.4165 15 6 1.9199 3.5505 1.1853 16 1 2.9903 3.6801 1.0256 17 6 1.5178 4.2041 2.5103 18 6 1.7993 5.7073 2.4348 19 6 1.0316 6.3065 1.2543 20 7 1.4522 5.6484 0.0108 21 6 0.8386 6.2914 -1.1587 22 6 1.1486 4.2121 0.0410 23 1 -0.3634 0.4302 0.9333 24 1 -0.3634 0.5931 -0.8392 25 1 -0.3634 -1.0233 -0.0941 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9480 -0.1037 -2.8517 29 1 1.7913 1.9565 3.3147 30 1 1.9358 0.4224 2.4239 31 1 3.2711 1.5989 2.3923 32 1 2.0965 3.7656 3.3232 33 1 0.4551 4.0410 2.6892 34 1 2.8678 5.8710 2.2948 35 1 1.4755 6.1851 3.3596 36 1 -0.0377 6.1547 1.4019 37 1 1.2413 7.3742 1.1891 38 1 1.0829 7.3537 -1.1593 39 1 1.2210 5.8302 -2.0693 40 1 -0.2434 6.1674 -1.1155 41 1 1.4432 3.7587 -0.9054 42 1 0.0788 4.0702 0.1941 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053245258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:13 Heat of formation + Delta-G solvation = 3.235213 kcal Electronic energy + Delta-G solvation = -18969.283374 eV Core-core repulsion = 16370.035500 eV Total energy + Delta-G solvation = -2599.247874 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.00427 -36.57532 -33.43519 -32.09266 -31.11172 -29.05701 -27.13401 -26.08037 -24.60949 -23.05270 -22.22957 -21.08106 -19.24605 -18.74765 -16.26109 -15.85128 -14.93718 -14.73526 -14.24739 -14.07154 -13.96348 -13.35713 -12.94412 -12.76329 -12.55085 -12.29879 -12.06094 -11.81835 -11.52590 -11.20728 -11.10016 -10.89259 -10.81436 -10.73895 -10.58502 -10.45338 -10.10468 -9.98851 -9.62850 -9.54190 -9.34054 -8.95096 -8.29902 -7.95490 -7.04401 -5.94053 -4.06145 3.29038 3.37631 3.41448 4.23579 4.44239 5.03642 5.22011 5.30036 5.33130 5.38829 5.60456 5.68871 5.74310 5.85926 6.01883 6.05606 6.09787 6.17806 6.24565 6.29199 6.39522 6.41019 6.46805 6.48726 6.60836 6.69634 6.74046 6.84935 7.02302 7.13986 7.21886 7.38917 7.44308 7.45112 7.69075 7.80764 8.04799 8.22190 8.39382 8.52538 9.03537 9.60810 11.05125 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.008710 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.539994 B = 3214.023015 C = 3581.727740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.211 3.789 4 H 0.041 0.959 5 C -0.537 4.537 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.536 5.536 14 C 0.033 3.967 15 C 0.096 3.904 16 H 0.055 0.945 17 C -0.117 4.117 18 C -0.115 4.115 19 C 0.058 3.942 20 N -0.543 5.543 21 C 0.029 3.971 22 C 0.070 3.930 23 H 0.045 0.955 24 H 0.038 0.962 25 H 0.024 0.976 26 H 0.091 0.909 27 H 0.033 0.967 28 H 0.259 0.741 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.028 0.972 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.020 0.980 41 H 0.084 0.916 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.216 8.022 5.703 11.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.150 4.150 3 C 0.105 3.895 4 H 0.059 0.941 5 C -0.576 4.576 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.526 5.526 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.261 5.261 14 C -0.115 4.115 15 C -0.013 4.013 16 H 0.073 0.927 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.070 4.070 20 N -0.268 5.268 21 C -0.119 4.119 22 C -0.058 4.058 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.109 0.891 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.038 0.962 41 H 0.102 0.898 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.206 7.923 5.512 10.966 hybrid contribution 1.119 -0.094 -0.180 1.137 sum -4.087 7.829 5.332 10.316 Atomic orbital electron populations 1.21691 0.98952 0.98244 1.00454 1.21616 0.92088 0.99351 1.01985 1.19332 0.92675 0.90825 0.86690 0.94144 1.21749 0.92747 1.36867 1.06205 0.92570 1.24886 0.97798 0.95143 0.95579 1.69882 1.34775 1.37966 1.09939 0.86649 0.86502 0.77563 0.77944 1.19976 1.21142 1.21061 1.62484 1.58277 1.00838 1.04472 1.22204 0.97706 0.99192 0.92443 1.21325 0.98594 0.88864 0.92500 0.92688 1.21743 1.01188 0.94285 0.98266 1.21564 1.01053 0.96116 0.96586 1.22056 0.96813 0.97889 0.90288 1.61835 1.59203 1.03750 1.02004 1.22296 0.96419 0.99191 0.94018 1.22082 0.97354 0.85738 1.00601 0.93591 0.94314 0.95703 0.89072 0.94824 0.93062 0.93949 0.92161 0.95333 0.92070 0.92221 0.91348 0.92104 0.95426 0.91552 0.91982 0.91257 0.96163 0.89782 0.95166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.71 37.16 0.36 -2.41 16 2 C -0.11 -2.65 5.05 -26.73 -0.13 -2.78 16 3 C 0.21 5.12 1.58 -68.86 -0.11 5.01 16 4 H 0.04 1.09 6.07 -51.93 -0.32 0.77 16 5 C -0.54 -14.29 7.06 -34.44 -0.24 -14.53 16 6 H 0.06 1.53 5.84 -52.49 -0.31 1.22 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.87 11.30 55.43 0.63 -24.24 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.54 -11.24 4.04 -228.19 -0.92 -12.17 16 14 C 0.03 0.65 8.36 60.06 0.50 1.15 16 15 C 0.10 1.88 1.94 -67.63 -0.13 1.75 16 16 H 0.06 1.25 6.88 -51.93 -0.36 0.89 16 17 C -0.12 -1.87 4.72 -26.61 -0.13 -2.00 16 18 C -0.11 -1.60 6.09 -26.65 -0.16 -1.76 16 19 C 0.06 0.81 5.46 -3.83 -0.02 0.79 16 20 N -0.54 -8.96 4.91 -242.98 -1.19 -10.15 16 21 C 0.03 0.41 9.59 60.06 0.58 0.98 16 22 C 0.07 1.32 4.60 -3.84 -0.02 1.30 16 23 H 0.04 0.90 7.83 -51.93 -0.41 0.49 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 2.41 6.01 -51.93 -0.31 2.10 16 27 H 0.03 0.78 6.28 -51.93 -0.33 0.46 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.04 0.72 6.26 -51.93 -0.33 0.40 16 30 H 0.06 1.19 6.15 -51.93 -0.32 0.87 16 31 H 0.03 0.60 6.41 -51.93 -0.33 0.27 16 32 H 0.06 0.96 6.48 -51.93 -0.34 0.62 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 1.81 6.35 -51.93 -0.33 1.48 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 308.91 15.07 4.66 4.66 Total: -1.00 -27.33 308.91 -8.90 -36.23 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.45 Total: 0.09 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 0.40 Total: -10.75 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -1.49 Total: -46.56 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.33 -8.90 -36.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053245258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.464 kcal (2) G-P(sol) polarization free energy of solvation -27.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds