Wall clock time and date at job start Mon Mar 30 2020 03:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47091 * 2 1 4 4 H 1.08999 * 109.47085 * 302.51475 * 3 2 1 5 5 C 1.50697 * 109.47264 * 182.50884 * 3 2 1 6 6 H 1.07998 * 120.00587 * 240.00469 * 5 3 2 7 7 C 1.37879 * 119.99624 * 60.00344 * 5 3 2 8 8 N 1.31516 * 120.00135 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99887 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47132 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47248 * 120.00082 * 9 7 5 12 12 H 1.48502 * 109.46834 * 239.99651 * 9 7 5 13 13 N 1.46906 * 109.47046 * 62.51041 * 3 2 1 14 14 C 1.46899 * 110.99774 * 63.45170 * 13 3 2 15 15 C 1.46901 * 111.00090 * 187.40196 * 13 3 2 16 16 H 1.09000 * 109.50295 * 303.16567 * 15 13 3 17 17 C 1.53114 * 109.50247 * 183.08413 * 15 13 3 18 18 C 1.53118 * 109.15950 * 182.36794 * 17 15 13 19 19 C 1.53037 * 109.28070 * 57.65473 * 18 17 15 20 20 N 1.46846 * 109.51462 * 300.82794 * 19 18 17 21 21 C 1.46896 * 110.99852 * 185.83082 * 20 19 18 22 22 C 1.46832 * 111.20917 * 61.74552 * 20 19 18 23 23 H 1.09002 * 109.47559 * 294.75042 * 1 2 3 24 24 H 1.09005 * 109.47410 * 54.74934 * 1 2 3 25 25 H 1.08998 * 109.47584 * 174.74664 * 1 2 3 26 26 H 1.08996 * 109.47369 * 240.00068 * 2 1 3 27 27 H 1.08996 * 109.46844 * 119.99886 * 2 1 3 28 28 H 0.96999 * 120.00270 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47444 * 183.95404 * 14 13 3 30 30 H 1.09001 * 109.47534 * 303.95100 * 14 13 3 31 31 H 1.09006 * 109.47305 * 63.94958 * 14 13 3 32 32 H 1.08995 * 109.52533 * 62.46323 * 17 15 13 33 33 H 1.08997 * 109.52524 * 302.27486 * 17 15 13 34 34 H 1.08998 * 109.50502 * 297.71256 * 18 17 15 35 35 H 1.09007 * 109.50479 * 177.59666 * 18 17 15 36 36 H 1.09006 * 109.45639 * 60.83675 * 19 18 17 37 37 H 1.09002 * 109.46465 * 180.81549 * 19 18 17 38 38 H 1.09004 * 109.47154 * 56.04867 * 21 20 19 39 39 H 1.08999 * 109.46915 * 176.04538 * 21 20 19 40 40 H 1.08993 * 109.47228 * 296.04305 * 21 20 19 41 41 H 1.08995 * 109.46174 * 178.23861 * 22 20 19 42 42 H 1.09000 * 109.46575 * 58.26520 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6403 1.9692 -0.8666 5 6 3.5457 1.4430 -0.0622 6 1 4.1189 1.8989 0.7315 7 6 4.1916 0.8614 -1.1325 8 7 3.4937 0.3058 -2.0989 9 14 6.0580 0.8613 -1.2093 10 1 6.6029 1.5427 -0.0077 11 1 6.5517 -0.5386 -1.2505 12 1 6.5031 1.5793 -2.4307 13 7 1.6005 2.1173 1.2287 14 6 2.1875 1.4829 2.4165 15 6 1.9199 3.5505 1.1853 16 1 2.9903 3.6801 1.0256 17 6 1.5178 4.2041 2.5103 18 6 1.7993 5.7073 2.4348 19 6 1.0316 6.3065 1.2543 20 7 1.4522 5.6484 0.0108 21 6 0.8386 6.2914 -1.1587 22 6 1.1486 4.2121 0.0410 23 1 -0.3634 0.4302 0.9333 24 1 -0.3634 0.5931 -0.8392 25 1 -0.3634 -1.0233 -0.0941 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9480 -0.1037 -2.8517 29 1 1.7913 1.9565 3.3147 30 1 1.9358 0.4224 2.4239 31 1 3.2711 1.5989 2.3923 32 1 2.0965 3.7656 3.3232 33 1 0.4551 4.0410 2.6892 34 1 2.8678 5.8710 2.2948 35 1 1.4755 6.1851 3.3596 36 1 -0.0377 6.1547 1.4019 37 1 1.2413 7.3742 1.1891 38 1 1.0829 7.3537 -1.1593 39 1 1.2210 5.8302 -2.0693 40 1 -0.2434 6.1674 -1.1155 41 1 1.4432 3.7587 -0.9054 42 1 0.0788 4.0702 0.1941 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053245258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:12 Heat of formation + Delta-G solvation = -14.270536 kcal Electronic energy + Delta-G solvation = -18970.042480 eV Core-core repulsion = 16370.035500 eV Total energy + Delta-G solvation = -2600.006980 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.46534 -38.17669 -35.09438 -33.78691 -32.76869 -30.55493 -28.90944 -27.46152 -26.29640 -24.78591 -23.61270 -22.52433 -20.82416 -20.47298 -18.25222 -17.36018 -16.73717 -16.14564 -15.82689 -15.45878 -15.38693 -14.88253 -14.79018 -14.29393 -14.03622 -13.75946 -13.46206 -13.26562 -13.15873 -13.02714 -12.73255 -12.58077 -12.38015 -12.31241 -12.24601 -11.97134 -11.66747 -11.56633 -11.51527 -11.15372 -11.09909 -10.76653 -10.37196 -9.21919 -8.87933 -8.00718 -6.21626 1.34216 1.37494 1.46765 2.40733 2.94859 3.17583 3.59047 3.92251 4.04955 4.16193 4.34314 4.45729 4.53104 4.56165 4.62559 4.69567 4.70983 4.78041 4.84338 4.88904 4.92502 4.96850 4.99349 5.05144 5.09753 5.16164 5.21548 5.27244 5.37267 5.43602 5.52945 5.54113 5.66935 5.82177 6.03887 6.16710 6.24859 6.26876 6.45613 6.73165 6.99580 7.48070 8.93975 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.008710 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.539994 B = 3214.023015 C = 3581.727740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.108 4.108 3 C 0.219 3.781 4 H 0.010 0.990 5 C -0.543 4.543 6 H 0.045 0.955 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.941 3.059 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.283 1.283 13 N -0.532 5.532 14 C 0.037 3.963 15 C 0.097 3.903 16 H 0.017 0.983 17 C -0.109 4.109 18 C -0.111 4.111 19 C 0.056 3.944 20 N -0.561 5.561 21 C 0.029 3.971 22 C 0.083 3.917 23 H 0.056 0.944 24 H 0.031 0.969 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.260 0.740 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.008 0.992 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.029 0.971 41 H 0.044 0.956 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.899 9.306 7.318 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.146 4.146 3 C 0.112 3.888 4 H 0.028 0.972 5 C -0.582 4.582 6 H 0.063 0.937 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.768 3.232 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.209 1.209 13 N -0.256 5.256 14 C -0.111 4.111 15 C -0.012 4.012 16 H 0.035 0.965 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.071 4.071 20 N -0.287 5.287 21 C -0.119 4.119 22 C -0.045 4.045 23 H 0.075 0.925 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.026 0.974 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.054 0.946 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.893 9.218 7.138 13.064 hybrid contribution 1.324 -0.449 -0.679 1.554 sum -4.569 8.770 6.459 11.811 Atomic orbital electron populations 1.21541 0.96262 0.99519 1.00710 1.21468 0.94452 0.98371 1.00344 1.19073 0.91235 0.91201 0.87277 0.97239 1.21959 0.94194 1.36260 1.05776 0.93719 1.25546 1.01542 0.95180 0.95503 1.70000 1.36069 1.38632 1.10330 0.85770 0.82091 0.77637 0.77707 1.19951 1.20525 1.20887 1.62463 1.57844 1.01695 1.03601 1.22221 0.96471 0.99368 0.93032 1.21356 0.96425 0.88252 0.95159 0.96542 1.21684 1.01559 0.95686 0.95774 1.21578 1.00532 0.94552 0.98235 1.22176 0.97208 0.98901 0.88814 1.61825 1.60254 1.02481 1.04101 1.22338 0.96753 1.00217 0.92551 1.21794 0.96920 0.87511 0.98310 0.92464 0.94996 0.93710 0.92126 0.94923 0.93076 0.90668 0.92411 0.97389 0.91567 0.91386 0.92460 0.88703 0.94603 0.89117 0.89430 0.92719 0.95260 0.93732 0.95108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 9.71 71.98 0.70 -4.24 16 2 C -0.11 -5.18 5.05 30.59 0.15 -5.03 16 3 C 0.22 10.97 1.58 44.17 0.07 11.04 16 4 H 0.01 0.55 6.07 -2.39 -0.01 0.54 16 5 C -0.54 -29.83 7.06 25.60 0.18 -29.65 16 6 H 0.04 2.52 5.84 -2.91 -0.02 2.50 16 7 C 0.02 1.22 5.30 84.65 0.45 1.67 16 8 N -0.91 -52.58 11.30 21.45 0.24 -52.33 16 9 Si 0.94 44.71 29.54 68.60 2.03 46.74 16 10 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 N -0.53 -22.40 4.04 -875.87 -3.54 -25.94 16 14 C 0.04 1.45 8.36 127.69 1.07 2.51 16 15 C 0.10 3.81 1.94 44.97 0.09 3.90 16 16 H 0.02 0.77 6.88 -2.39 -0.02 0.76 16 17 C -0.11 -3.27 4.72 30.67 0.14 -3.12 16 18 C -0.11 -2.76 6.09 30.65 0.19 -2.57 16 19 C 0.06 1.41 5.46 86.33 0.47 1.88 16 20 N -0.56 -18.02 4.91 -922.64 -4.53 -22.55 16 21 C 0.03 0.79 9.59 127.69 1.22 2.01 16 22 C 0.08 3.17 4.60 86.33 0.40 3.57 16 23 H 0.06 2.15 7.83 -2.39 -0.02 2.13 16 24 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 3.30 6.01 -2.39 -0.01 3.28 16 27 H 0.03 1.53 6.28 -2.39 -0.01 1.52 16 28 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.07 2.40 6.26 -2.39 -0.01 2.38 16 30 H 0.06 2.24 6.15 -2.39 -0.01 2.23 16 31 H 0.01 0.32 6.41 -2.38 -0.02 0.31 16 32 H 0.07 1.91 6.48 -2.39 -0.02 1.89 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.09 1.87 8.09 -2.39 -0.02 1.85 16 38 H 0.09 1.89 8.10 -2.38 -0.02 1.87 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.04 2.03 6.35 -2.39 -0.02 2.01 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -60.29 308.91 0.29 -60.00 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.97 Total: 12.12 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 5.13 Total: -18.03 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -7.83 Total: -100.83 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -60.29 0.29 -60.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053245258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.727 kcal (2) G-P(sol) polarization free energy of solvation -60.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds