Wall clock time and date at job start Mon Mar 30 2020 03:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.46881 * 2 1 4 4 H 1.09001 * 109.47297 * 55.00176 * 3 2 1 5 5 C 1.53004 * 109.47045 * 174.99946 * 3 2 1 6 6 N 1.46893 * 109.47614 * 295.00105 * 3 2 1 7 7 C 1.46959 * 111.00642 * 180.02562 * 6 3 2 8 8 C 1.53046 * 109.36621 * 183.18783 * 7 6 3 9 9 N 1.46952 * 109.36663 * 301.59372 * 8 7 6 10 10 C 1.46901 * 111.00070 * 183.18745 * 9 8 7 11 11 H 1.09002 * 109.47401 * 300.00311 * 10 9 8 12 12 C 1.53000 * 109.46769 * 60.00604 * 10 9 8 13 13 C 1.50699 * 109.47121 * 180.02562 * 10 9 8 14 14 H 1.07999 * 120.00019 * 0.02562 * 13 10 9 15 15 C 1.37877 * 120.00129 * 180.02562 * 13 10 9 16 16 N 1.31513 * 119.99969 * 180.02562 * 15 13 10 17 17 Si 1.86797 * 119.99840 * 359.97438 * 15 13 10 18 18 H 1.48497 * 109.47167 * 89.99961 * 17 15 13 19 19 H 1.48500 * 109.47028 * 210.00109 * 17 15 13 20 20 H 1.48497 * 109.47377 * 330.00144 * 17 15 13 21 21 C 1.46956 * 110.87886 * 59.32394 * 9 8 7 22 22 C 1.46962 * 110.99988 * 303.79991 * 6 3 2 23 23 H 1.08999 * 109.47104 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47192 * 299.99408 * 1 2 3 25 25 H 1.08998 * 109.47129 * 60.00135 * 1 2 3 26 26 H 1.08999 * 109.47168 * 240.00037 * 2 1 3 27 27 H 1.08993 * 109.47208 * 120.00363 * 2 1 3 28 28 H 1.09001 * 109.46885 * 59.99978 * 5 3 2 29 29 H 1.08999 * 109.47279 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47049 * 300.00195 * 5 3 2 31 31 H 1.08998 * 109.48484 * 63.21681 * 7 6 3 32 32 H 1.09002 * 109.49914 * 303.16595 * 7 6 3 33 33 H 1.09002 * 109.48731 * 181.62763 * 8 7 6 34 34 H 1.09005 * 109.50832 * 61.57864 * 8 7 6 35 35 H 1.08992 * 109.47399 * 59.99697 * 12 10 9 36 36 H 1.09004 * 109.46724 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.47194 * 299.99524 * 12 10 9 38 38 H 0.96999 * 119.99716 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.48957 * 60.64449 * 21 9 8 40 40 H 1.09000 * 109.49362 * 180.70971 * 21 9 8 41 41 H 1.08998 * 109.49163 * 296.77934 * 22 6 3 42 42 H 1.09005 * 109.48787 * 56.82043 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6514 2.0993 -1.2551 7 6 2.1259 3.4897 -1.2909 8 6 1.6339 4.1609 -2.5754 9 7 2.1271 3.4092 -3.7378 10 6 1.7384 4.0660 -4.9930 11 1 0.6515 4.1253 -5.0506 12 6 2.3292 5.4767 -5.0345 13 6 2.2600 3.2679 -6.1600 14 1 2.8235 2.3630 -5.9866 15 6 2.0179 3.6929 -7.4491 16 7 2.4727 2.9961 -8.4675 17 14 1.0426 5.2576 -7.7490 18 1 1.9702 6.4157 -7.8061 19 1 0.3107 5.1456 -9.0362 20 1 0.0715 5.4553 -6.6430 21 6 1.6526 2.0188 -3.7021 22 6 2.1450 1.3478 -2.4176 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9994 0.9053 -0.7161 29 1 3.9281 2.4720 0.1262 30 1 3.8532 0.9570 1.0571 31 1 3.2155 3.5027 -1.2682 32 1 1.7376 4.0290 -0.4270 33 1 2.0088 5.1835 -2.6179 34 1 0.5439 4.1726 -2.5855 35 1 3.4159 5.4174 -4.9769 36 1 2.0403 5.9642 -5.9657 37 1 1.9515 6.0538 -4.1904 38 1 2.3020 3.2949 -9.3744 39 1 0.5629 2.0058 -3.7248 40 1 2.0411 1.4796 -4.5660 41 1 3.2349 1.3369 -2.4075 42 1 1.7707 0.3249 -2.3751 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055066561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:39 Heat of formation + Delta-G solvation = 14.521985 kcal Electronic energy + Delta-G solvation = -18618.937734 eV Core-core repulsion = 16020.179291 eV Total energy + Delta-G solvation = -2598.758443 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.40069 -36.71972 -33.56220 -32.01582 -30.80557 -29.99038 -28.91477 -25.54306 -25.05899 -23.50594 -22.56295 -20.85288 -19.72591 -18.61704 -16.77874 -16.19640 -15.27264 -14.63973 -14.48102 -14.16998 -14.09271 -13.71837 -13.43371 -13.08396 -12.93909 -12.73957 -12.34836 -11.92194 -11.81823 -11.65437 -11.46055 -11.22690 -10.92799 -10.81994 -10.69915 -10.58614 -10.45052 -10.23304 -10.06414 -9.85027 -9.45123 -8.96135 -8.55019 -7.99484 -7.29626 -6.06093 -4.04483 3.27483 3.37768 3.39736 4.13971 4.40855 4.76112 4.81599 5.06694 5.19309 5.26399 5.33945 5.42560 5.52479 5.62402 5.68858 5.70111 5.77549 5.83790 5.90594 5.97649 6.04814 6.06483 6.15859 6.17925 6.33137 6.35713 6.39412 6.44690 6.50816 6.57043 6.69450 6.79321 6.90651 7.28517 7.36694 7.39534 7.62659 7.99320 8.13362 8.67555 8.99702 9.56269 11.06623 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038225 B = 0.006086 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.328397 B = 4599.620446 C = 4820.610335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C 0.080 3.920 4 H 0.076 0.924 5 C -0.187 4.187 6 N -0.530 5.530 7 C 0.059 3.941 8 C 0.051 3.949 9 N -0.524 5.524 10 C 0.182 3.818 11 H -0.003 1.003 12 C -0.145 4.145 13 C -0.505 4.505 14 H 0.082 0.918 15 C 0.070 3.930 16 N -0.900 5.900 17 Si 0.887 3.113 18 H -0.279 1.279 19 H -0.298 1.298 20 H -0.269 1.269 21 C 0.067 3.933 22 C 0.052 3.948 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.029 0.971 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.029 0.971 38 H 0.264 0.736 39 H 0.028 0.972 40 H 0.094 0.906 41 H 0.041 0.959 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 -2.118 16.545 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C -0.029 4.029 4 H 0.095 0.905 5 C -0.246 4.246 6 N -0.254 5.254 7 C -0.069 4.069 8 C -0.078 4.078 9 N -0.249 5.249 10 C 0.075 3.925 11 H 0.015 0.985 12 C -0.202 4.202 13 C -0.543 4.543 14 H 0.100 0.900 15 C -0.132 4.132 16 N -0.538 5.538 17 Si 0.717 3.283 18 H -0.206 1.206 19 H -0.225 1.225 20 H -0.195 1.195 21 C -0.061 4.061 22 C -0.076 4.076 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.702 -2.129 16.333 16.559 hybrid contribution -0.419 0.958 -0.302 1.089 sum -2.121 -1.170 16.031 16.213 Atomic orbital electron populations 1.21658 0.95286 1.00628 1.02529 1.21649 0.96789 0.95496 1.01732 1.21723 0.93000 0.95238 0.92937 0.90535 1.22475 0.98005 1.02183 1.01943 1.62424 1.59158 1.02195 1.01662 1.22145 0.98272 0.88854 0.97620 1.22168 0.97379 0.97637 0.90620 1.62101 1.59177 1.01624 1.02027 1.19659 0.93431 0.91556 0.87888 0.98527 1.22187 1.01998 0.97722 0.98300 1.20984 1.34798 1.10249 0.88285 0.89978 1.24921 0.95350 0.96815 0.96083 1.69881 1.46075 1.39204 0.98665 0.86871 0.80482 0.84047 0.76851 1.20588 1.22530 1.19458 1.22045 0.97309 0.90283 0.96482 1.22341 0.98121 0.97101 0.90048 0.93661 0.93375 0.91373 0.91520 0.92224 0.92158 0.92350 0.92631 0.93957 0.91497 0.90783 0.95273 0.92141 0.94117 0.95242 0.92655 0.95398 0.88811 0.94112 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.80 37.16 0.36 -1.18 16 2 C -0.12 -1.28 5.10 -26.73 -0.14 -1.41 16 3 C 0.08 0.94 2.43 -67.72 -0.16 0.77 16 4 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 5 C -0.19 -2.10 8.50 37.16 0.32 -1.79 16 6 N -0.53 -7.64 4.19 -226.49 -0.95 -8.59 16 7 C 0.06 0.88 5.13 -3.77 -0.02 0.86 16 8 C 0.05 0.90 5.32 -3.77 -0.02 0.88 16 9 N -0.52 -10.98 4.57 -227.88 -1.04 -12.02 16 10 C 0.18 4.38 1.65 -68.86 -0.11 4.26 16 11 H 0.00 -0.07 7.20 -51.93 -0.37 -0.44 16 12 C -0.14 -3.22 8.45 37.16 0.31 -2.90 16 13 C -0.51 -14.11 8.47 -34.44 -0.29 -14.40 16 14 H 0.08 2.48 6.66 -52.49 -0.35 2.13 16 15 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 16 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 17 Si 0.89 22.14 24.37 -169.99 -4.14 18.00 16 18 H -0.28 -6.78 6.87 56.52 0.39 -6.39 16 19 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 20 H -0.27 -6.53 6.53 56.52 0.37 -6.16 16 21 C 0.07 1.33 5.33 -3.76 -0.02 1.31 16 22 C 0.05 0.82 4.84 -3.76 -0.02 0.80 16 23 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.86 7.75 -51.93 -0.40 0.46 16 26 H 0.07 0.76 6.00 -51.93 -0.31 0.45 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16 29 H 0.06 0.68 6.48 -51.93 -0.34 0.34 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.65 6.48 -51.93 -0.34 0.31 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.25 6.14 -51.93 -0.32 0.93 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.04 0.94 3.27 -51.93 -0.17 0.77 16 37 H 0.03 0.56 6.34 -51.93 -0.33 0.23 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 2.06 6.14 -51.93 -0.32 1.74 16 41 H 0.04 0.68 6.57 -51.93 -0.34 0.34 16 42 H 0.07 1.08 5.95 -51.93 -0.31 0.78 16 LS Contribution 301.16 15.07 4.54 4.54 Total: -1.00 -29.22 301.16 -7.93 -37.15 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.22 Total: -1.55 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 0.11 Total: -10.89 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -1.22 Total: -47.25 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.22 -7.93 -37.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055066561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.677 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds