Wall clock time and date at job start Mon Mar 30 2020 03:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.46881 * 2 1 4 4 H 1.09001 * 109.47297 * 55.00176 * 3 2 1 5 5 C 1.53004 * 109.47045 * 174.99946 * 3 2 1 6 6 N 1.46893 * 109.47614 * 295.00105 * 3 2 1 7 7 C 1.46959 * 111.00642 * 180.02562 * 6 3 2 8 8 C 1.53046 * 109.36621 * 183.18783 * 7 6 3 9 9 N 1.46952 * 109.36663 * 301.59372 * 8 7 6 10 10 C 1.46901 * 111.00070 * 183.18745 * 9 8 7 11 11 H 1.09002 * 109.47401 * 300.00311 * 10 9 8 12 12 C 1.53000 * 109.46769 * 60.00604 * 10 9 8 13 13 C 1.50699 * 109.47121 * 180.02562 * 10 9 8 14 14 H 1.07999 * 120.00019 * 0.02562 * 13 10 9 15 15 C 1.37877 * 120.00129 * 180.02562 * 13 10 9 16 16 N 1.31513 * 119.99969 * 180.02562 * 15 13 10 17 17 Si 1.86797 * 119.99840 * 359.97438 * 15 13 10 18 18 H 1.48497 * 109.47167 * 89.99961 * 17 15 13 19 19 H 1.48500 * 109.47028 * 210.00109 * 17 15 13 20 20 H 1.48497 * 109.47377 * 330.00144 * 17 15 13 21 21 C 1.46956 * 110.87886 * 59.32394 * 9 8 7 22 22 C 1.46962 * 110.99988 * 303.79991 * 6 3 2 23 23 H 1.08999 * 109.47104 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47192 * 299.99408 * 1 2 3 25 25 H 1.08998 * 109.47129 * 60.00135 * 1 2 3 26 26 H 1.08999 * 109.47168 * 240.00037 * 2 1 3 27 27 H 1.08993 * 109.47208 * 120.00363 * 2 1 3 28 28 H 1.09001 * 109.46885 * 59.99978 * 5 3 2 29 29 H 1.08999 * 109.47279 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47049 * 300.00195 * 5 3 2 31 31 H 1.08998 * 109.48484 * 63.21681 * 7 6 3 32 32 H 1.09002 * 109.49914 * 303.16595 * 7 6 3 33 33 H 1.09002 * 109.48731 * 181.62763 * 8 7 6 34 34 H 1.09005 * 109.50832 * 61.57864 * 8 7 6 35 35 H 1.08992 * 109.47399 * 59.99697 * 12 10 9 36 36 H 1.09004 * 109.46724 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.47194 * 299.99524 * 12 10 9 38 38 H 0.96999 * 119.99716 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.48957 * 60.64449 * 21 9 8 40 40 H 1.09000 * 109.49362 * 180.70971 * 21 9 8 41 41 H 1.08998 * 109.49163 * 296.77934 * 22 6 3 42 42 H 1.09005 * 109.48787 * 56.82043 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6514 2.0993 -1.2551 7 6 2.1259 3.4897 -1.2909 8 6 1.6339 4.1609 -2.5754 9 7 2.1271 3.4092 -3.7378 10 6 1.7384 4.0660 -4.9930 11 1 0.6515 4.1253 -5.0506 12 6 2.3292 5.4767 -5.0345 13 6 2.2600 3.2679 -6.1600 14 1 2.8235 2.3630 -5.9866 15 6 2.0179 3.6929 -7.4491 16 7 2.4727 2.9961 -8.4675 17 14 1.0426 5.2576 -7.7490 18 1 1.9702 6.4157 -7.8061 19 1 0.3107 5.1456 -9.0362 20 1 0.0715 5.4553 -6.6430 21 6 1.6526 2.0188 -3.7021 22 6 2.1450 1.3478 -2.4176 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9994 0.9053 -0.7161 29 1 3.9281 2.4720 0.1262 30 1 3.8532 0.9570 1.0571 31 1 3.2155 3.5027 -1.2682 32 1 1.7376 4.0290 -0.4270 33 1 2.0088 5.1835 -2.6179 34 1 0.5439 4.1726 -2.5855 35 1 3.4159 5.4174 -4.9769 36 1 2.0403 5.9642 -5.9657 37 1 1.9515 6.0538 -4.1904 38 1 2.3020 3.2949 -9.3744 39 1 0.5629 2.0058 -3.7248 40 1 2.0411 1.4796 -4.5660 41 1 3.2349 1.3369 -2.4075 42 1 1.7707 0.3249 -2.3751 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055066561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:38 Heat of formation + Delta-G solvation = -6.208809 kcal Electronic energy + Delta-G solvation = -18619.836689 eV Core-core repulsion = 16020.179291 eV Total energy + Delta-G solvation = -2599.657398 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68851 -38.18565 -35.19167 -33.71340 -32.25309 -31.38675 -30.11993 -27.33885 -26.57426 -24.63498 -23.90715 -22.32048 -21.24408 -19.91533 -18.85135 -17.56795 -16.88766 -15.98835 -15.81606 -15.65837 -15.51766 -15.04177 -14.80432 -14.56325 -14.27251 -14.13124 -13.97409 -13.48153 -13.15732 -12.82314 -12.69932 -12.58002 -12.45602 -12.26487 -12.05947 -12.04719 -11.92472 -11.60225 -11.45579 -11.38082 -11.15503 -10.91721 -10.71635 -9.18308 -8.97127 -8.28977 -6.31942 1.28715 1.34174 1.44025 2.30872 3.00723 3.04061 3.20899 3.86866 4.00178 4.20320 4.23145 4.32456 4.35450 4.42277 4.50583 4.56671 4.58661 4.63339 4.65481 4.74293 4.78774 4.84643 4.89294 4.91930 4.99677 5.06865 5.11963 5.14355 5.20583 5.23678 5.33132 5.42806 5.46060 5.57304 5.64672 6.00282 6.15186 6.26948 6.41106 6.70981 6.74957 7.32916 8.87259 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038225 B = 0.006086 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.328397 B = 4599.620446 C = 4820.610335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.080 3.920 4 H 0.091 0.909 5 C -0.183 4.183 6 N -0.535 5.535 7 C 0.065 3.935 8 C 0.050 3.950 9 N -0.534 5.534 10 C 0.184 3.816 11 H -0.016 1.016 12 C -0.140 4.140 13 C -0.507 4.507 14 H 0.042 0.958 15 C 0.013 3.987 16 N -0.947 5.947 17 Si 0.949 3.051 18 H -0.263 1.263 19 H -0.298 1.298 20 H -0.255 1.255 21 C 0.071 3.929 22 C 0.068 3.932 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.024 0.976 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.064 0.936 38 H 0.266 0.734 39 H 0.016 0.984 40 H 0.058 0.942 41 H 0.033 0.967 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.289 -0.827 19.235 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C -0.028 4.028 4 H 0.109 0.891 5 C -0.241 4.241 6 N -0.259 5.259 7 C -0.063 4.063 8 C -0.079 4.079 9 N -0.259 5.259 10 C 0.076 3.924 11 H 0.001 0.999 12 C -0.197 4.197 13 C -0.545 4.545 14 H 0.060 0.940 15 C -0.184 4.184 16 N -0.588 5.588 17 Si 0.776 3.224 18 H -0.189 1.189 19 H -0.226 1.226 20 H -0.180 1.180 21 C -0.058 4.058 22 C -0.061 4.061 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.284 -0.837 19.061 19.216 hybrid contribution -0.214 0.447 -1.076 1.185 sum -2.498 -0.390 17.985 18.162 Atomic orbital electron populations 1.21616 0.95320 1.01038 1.01792 1.21653 0.96679 0.94899 1.02256 1.21832 0.93543 0.95741 0.91638 0.89058 1.22425 0.97312 1.01998 1.02389 1.62411 1.59241 1.02152 1.02128 1.22126 0.98165 0.89078 0.96963 1.22295 0.97103 0.98131 0.90335 1.62066 1.59613 1.02165 1.02073 1.19503 0.92379 0.92464 0.88027 0.99858 1.22077 1.01660 0.96486 0.99463 1.21218 1.33755 1.09378 0.90140 0.93956 1.25753 0.96556 1.00332 0.95764 1.70028 1.48114 1.41395 0.99227 0.85854 0.79415 0.80196 0.76907 1.18908 1.22580 1.17980 1.21934 0.96360 0.90027 0.97442 1.22099 0.97439 0.97480 0.89039 0.92783 0.92443 0.93670 0.92563 0.90119 0.93641 0.92682 0.90574 0.94185 0.88616 0.89630 0.95799 0.92585 0.94777 0.91701 0.92534 0.96549 0.92380 0.94869 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.80 71.98 0.71 -2.01 16 2 C -0.12 -2.21 5.10 30.59 0.16 -2.06 16 3 C 0.08 1.66 2.43 44.92 0.11 1.77 16 4 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 5 C -0.18 -3.60 8.50 71.98 0.61 -2.99 16 6 N -0.53 -14.40 4.19 -870.47 -3.65 -18.05 16 7 C 0.06 1.74 5.13 86.31 0.44 2.19 16 8 C 0.05 1.65 5.32 86.31 0.46 2.11 16 9 N -0.53 -22.37 4.57 -874.87 -4.00 -26.37 16 10 C 0.18 8.86 1.65 44.17 0.07 8.94 16 11 H -0.02 -0.81 7.20 -2.39 -0.02 -0.82 16 12 C -0.14 -5.94 8.45 71.98 0.61 -5.33 16 13 C -0.51 -29.31 8.47 25.60 0.22 -29.09 16 14 H 0.04 2.72 6.66 -2.91 -0.02 2.70 16 15 C 0.01 0.78 5.45 84.65 0.46 1.24 16 16 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 17 Si 0.95 45.65 24.37 68.60 1.67 47.33 16 18 H -0.26 -11.95 6.87 99.48 0.68 -11.26 16 19 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 20 H -0.26 -11.62 6.53 99.48 0.65 -10.97 16 21 C 0.07 2.89 5.33 86.31 0.46 3.35 16 22 C 0.07 2.14 4.84 86.31 0.42 2.56 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.04 1.08 7.75 -2.39 -0.02 1.06 16 26 H 0.06 1.18 6.00 -2.39 -0.01 1.17 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.03 6.56 -2.39 -0.02 1.02 16 29 H 0.05 1.13 6.48 -2.39 -0.02 1.11 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.04 1.12 6.48 -2.39 -0.02 1.10 16 32 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.09 2.63 6.14 -2.39 -0.01 2.62 16 34 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.03 1.49 3.27 -2.39 -0.01 1.48 16 37 H 0.06 2.28 6.34 -2.39 -0.02 2.27 16 38 H 0.27 15.69 8.31 -92.71 -0.77 14.91 16 39 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.06 2.74 6.14 -2.39 -0.01 2.73 16 41 H 0.03 1.10 6.57 -2.39 -0.02 1.09 16 42 H 0.09 2.52 5.95 -2.38 -0.01 2.51 16 Total: -1.00 -64.71 301.16 -0.06 -64.77 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.90 Total: 11.04 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 4.72 Total: -19.34 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -7.35 Total: -103.79 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.67 Total: 47.33 kcal Total: -64.71 -0.06 -64.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055066561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.565 kcal (2) G-P(sol) polarization free energy of solvation -64.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds