Wall clock time and date at job start Mon Mar 30 2020 03:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47556 * 2 1 4 4 H 1.09004 * 109.47035 * 303.94747 * 3 2 1 5 5 C 1.52996 * 109.47300 * 183.94528 * 3 2 1 6 6 N 1.46899 * 109.47087 * 63.94769 * 3 2 1 7 7 C 1.46953 * 111.00363 * 68.56803 * 6 3 2 8 8 C 1.53046 * 109.36936 * 183.18744 * 7 6 3 9 9 N 1.46955 * 109.36538 * 301.60432 * 8 7 6 10 10 C 1.46899 * 111.00049 * 183.18688 * 9 8 7 11 11 H 1.08998 * 109.47387 * 176.19923 * 10 9 8 12 12 C 1.53005 * 109.47019 * 296.19830 * 10 9 8 13 13 C 1.50698 * 109.47547 * 56.19574 * 10 9 8 14 14 H 1.08001 * 119.99629 * 0.02562 * 13 10 9 15 15 C 1.37872 * 120.00349 * 179.97438 * 13 10 9 16 16 N 1.31516 * 120.00137 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 120.00005 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.46875 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46917 * 120.00542 * 17 15 13 20 20 H 1.48494 * 109.47244 * 240.00401 * 17 15 13 21 21 C 1.46951 * 110.88375 * 59.31653 * 9 8 7 22 22 C 1.46955 * 111.00049 * 192.37252 * 6 3 2 23 23 H 1.08992 * 109.47872 * 174.77753 * 1 2 3 24 24 H 1.09002 * 109.46840 * 294.78335 * 1 2 3 25 25 H 1.09009 * 109.46885 * 54.77561 * 1 2 3 26 26 H 1.09007 * 109.46682 * 240.00120 * 2 1 3 27 27 H 1.09002 * 109.47038 * 120.00507 * 2 1 3 28 28 H 1.09001 * 109.47339 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.47255 * 300.00084 * 5 3 2 30 30 H 1.09005 * 109.47232 * 60.00355 * 5 3 2 31 31 H 1.08997 * 109.48833 * 303.16245 * 7 6 3 32 32 H 1.09007 * 109.48717 * 63.22167 * 7 6 3 33 33 H 1.09006 * 109.48858 * 61.56850 * 8 7 6 34 34 H 1.08995 * 109.49103 * 181.63067 * 8 7 6 35 35 H 1.09006 * 109.46958 * 180.02562 * 12 10 9 36 36 H 1.08999 * 109.46897 * 300.00103 * 12 10 9 37 37 H 1.08998 * 109.46965 * 59.99835 * 12 10 9 38 38 H 0.97000 * 120.00344 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.49637 * 180.71376 * 21 9 8 40 40 H 1.09000 * 109.50551 * 60.65765 * 21 9 8 41 41 H 1.09002 * 109.48899 * 296.77470 * 22 6 3 42 42 H 1.09000 * 109.49009 * 56.82329 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6201 1.9763 -0.8525 5 6 3.5668 1.4435 -0.0992 6 7 1.6299 2.1068 1.2443 7 6 2.3376 1.5415 2.4014 8 6 1.8257 2.2036 3.6827 9 7 2.0358 3.6556 3.5984 10 6 1.6256 4.3200 4.8426 11 1 1.8541 5.3839 4.7788 12 6 0.1211 4.1330 5.0486 13 6 2.3706 3.7150 6.0045 14 1 3.0784 2.9170 5.8354 15 6 2.1495 4.1809 7.2831 16 7 1.2879 5.1531 7.4890 17 14 3.0736 3.4314 8.7232 18 1 3.9781 2.3626 8.2285 19 1 3.8744 4.4837 9.3990 20 1 2.1032 2.8526 9.6867 21 6 1.3280 4.2210 2.4413 22 6 1.8400 3.5588 1.1599 23 1 -0.3634 -1.0233 -0.0935 24 1 -0.3633 0.4308 0.9330 25 1 -0.3633 0.5928 -0.8396 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 3.9303 2.4711 -0.0988 29 1 3.9867 0.9096 0.7533 30 1 3.8713 0.9505 -1.0225 31 1 2.1564 0.4677 2.4494 32 1 3.4071 1.7258 2.2991 33 1 0.7619 1.9963 3.7991 34 1 2.3697 1.8065 4.5396 35 1 -0.1834 4.6264 5.9717 36 1 -0.4178 4.5705 4.2082 37 1 -0.1074 3.0691 5.1124 38 1 1.1320 5.4806 8.3886 39 1 1.5092 5.2947 2.3932 40 1 0.2585 4.0369 2.5434 41 1 2.9038 3.7662 1.0436 42 1 1.2962 3.9558 0.3028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055066563.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:41 Heat of formation + Delta-G solvation = 4.974133 kcal Electronic energy + Delta-G solvation = -18636.906764 eV Core-core repulsion = 16037.734295 eV Total energy + Delta-G solvation = -2599.172469 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.30897 -36.64868 -33.52377 -31.97322 -30.34274 -29.81844 -28.19800 -25.36093 -24.95525 -23.39704 -22.98881 -20.92605 -19.74745 -18.26631 -16.23596 -16.09726 -14.95392 -14.60897 -14.35065 -14.13618 -13.84772 -13.74432 -13.29323 -13.18016 -12.83964 -12.47852 -11.93727 -11.75647 -11.62462 -11.44330 -11.12898 -11.02471 -10.84135 -10.74740 -10.67542 -10.58163 -10.39969 -10.31015 -10.09491 -9.84037 -9.53130 -8.77860 -8.36988 -7.93490 -7.05214 -5.98930 -4.02755 3.30901 3.38789 3.42889 4.19199 4.43121 4.81914 5.04709 5.12305 5.25085 5.33305 5.41970 5.47222 5.57668 5.69107 5.74099 5.76900 5.85476 5.90202 5.99821 6.02232 6.10554 6.12773 6.25109 6.29104 6.40608 6.46750 6.55781 6.72759 6.75418 6.90339 6.94232 7.19654 7.40402 7.43273 7.61443 7.78304 7.86545 8.16250 8.44327 8.65584 9.03578 9.62403 11.08195 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.005960 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.527208 B = 4697.219001 C = 4881.277533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.079 3.921 4 H 0.075 0.925 5 C -0.186 4.186 6 N -0.529 5.529 7 C 0.053 3.947 8 C 0.065 3.935 9 N -0.533 5.533 10 C 0.211 3.789 11 H 0.038 0.962 12 C -0.170 4.170 13 C -0.500 4.500 14 H 0.063 0.937 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.286 1.286 21 C 0.055 3.945 22 C 0.060 3.940 23 H 0.042 0.958 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.032 0.968 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.009 0.991 37 H 0.028 0.972 38 H 0.259 0.741 39 H 0.066 0.934 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 -7.167 -13.641 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.030 4.030 4 H 0.093 0.907 5 C -0.245 4.245 6 N -0.253 5.253 7 C -0.075 4.075 8 C -0.063 4.063 9 N -0.257 5.257 10 C 0.104 3.896 11 H 0.056 0.944 12 C -0.229 4.229 13 C -0.539 4.539 14 H 0.081 0.919 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.074 4.074 22 C -0.068 4.068 23 H 0.062 0.938 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.028 0.972 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.208 -7.048 -13.483 15.215 hybrid contribution 0.437 -0.274 0.837 0.983 sum 0.645 -7.322 -12.645 14.626 Atomic orbital electron populations 1.21627 0.95334 1.00237 1.02659 1.21554 0.96724 0.95476 1.01353 1.21730 0.92882 0.95353 0.93020 0.90680 1.22466 0.97961 1.02097 1.01926 1.62363 1.56987 1.03704 1.02252 1.22323 0.96361 0.98195 0.90623 1.22013 0.99126 0.89502 0.95707 1.62493 1.56126 1.02958 1.04162 1.19276 0.90550 0.94709 0.85030 0.94381 1.22370 0.99958 0.99317 1.01251 1.21179 1.22843 1.19178 0.90687 0.91936 1.24928 0.95384 0.95124 0.98830 1.69901 1.34792 1.27301 1.21305 0.86491 0.79666 0.79107 0.82441 1.19790 1.21096 1.21180 1.22054 0.96645 0.98112 0.90622 1.22156 0.99160 0.87513 0.97984 0.93849 0.91466 0.93400 0.92387 0.91910 0.92539 0.92018 0.92698 0.91365 0.94160 0.94995 0.89662 0.89562 0.97182 0.95286 0.93104 0.91521 0.94603 0.94442 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.73 37.16 0.36 -1.22 16 2 C -0.11 -1.25 5.36 -26.74 -0.14 -1.39 16 3 C 0.08 0.96 2.31 -67.72 -0.16 0.81 16 4 H 0.07 0.88 7.98 -51.93 -0.41 0.47 16 5 C -0.19 -2.15 8.39 37.16 0.31 -1.84 16 6 N -0.53 -7.91 4.15 -226.50 -0.94 -8.84 16 7 C 0.05 0.86 4.70 -3.77 -0.02 0.84 16 8 C 0.07 1.30 4.93 -3.77 -0.02 1.28 16 9 N -0.53 -11.58 4.73 -227.88 -1.08 -12.65 16 10 C 0.21 5.34 2.42 -68.86 -0.17 5.17 16 11 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 12 C -0.17 -4.18 8.27 37.16 0.31 -3.87 16 13 C -0.50 -13.66 7.89 -34.44 -0.27 -13.93 16 14 H 0.06 1.71 6.41 -52.49 -0.34 1.37 16 15 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 16 N -0.89 -25.56 11.32 55.43 0.63 -24.93 16 17 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.05 1.02 5.13 -3.77 -0.02 1.01 16 22 C 0.06 0.94 5.36 -3.77 -0.02 0.92 16 23 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.88 7.87 -51.93 -0.41 0.48 16 25 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.73 6.42 -51.93 -0.33 0.40 16 28 H 0.06 0.69 6.85 -51.93 -0.36 0.34 16 29 H 0.06 0.76 6.39 -51.93 -0.33 0.42 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.01 6.36 -51.93 -0.33 0.68 16 32 H 0.04 0.68 6.41 -51.93 -0.33 0.34 16 33 H 0.03 0.67 6.57 -51.93 -0.34 0.33 16 34 H 0.09 1.84 6.14 -51.93 -0.32 1.52 16 35 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 36 H 0.01 0.21 6.48 -51.93 -0.34 -0.12 16 37 H 0.03 0.70 6.56 -51.93 -0.34 0.36 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.04 0.71 6.48 -51.93 -0.34 0.37 16 41 H 0.04 0.60 6.85 -51.93 -0.36 0.25 16 42 H 0.07 0.90 8.05 -51.93 -0.42 0.49 16 LS Contribution 305.89 15.07 4.61 4.61 Total: -1.00 -27.75 305.89 -9.01 -36.75 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.28 Total: -0.56 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -1.39 Total: -46.43 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.75 -9.01 -36.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055066563.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.727 kcal (2) G-P(sol) polarization free energy of solvation -27.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds